diff --git a/SequenceComparison/distancet.h b/SequenceComparison/distancet.h index 8331c30844a0852190f2562dde1278278061836c..e1d023ea00bf632354749760d8e018a68ef0af24 100644 --- a/SequenceComparison/distancet.h +++ b/SequenceComparison/distancet.h @@ -3,6 +3,13 @@ #include "calcul.h" +enum distance_type { + euklid = 1, + manhattan = 2, + csiChroma = 3, + csiChord = 4 +}; + ///Contains pointer to currently used distance function which is internally used for struct distancet { @@ -23,16 +30,16 @@ struct distancet { { switch (type_) { - case 1: dist.classic = calcul::distance_dtw_euklid; + case distance_type::euklid: dist.classic = calcul::distance_dtw_euklid; type = 1; break; - case 2: dist.classic = calcul::distance_dtw_manhattan; + case distance_type::manhattan: dist.classic = calcul::distance_dtw_manhattan; type = 1; break; - case 3: dist.csiChroma = calcul::distance_dtw_csiChroma; + case distance_type::csiChroma: dist.csiChroma = calcul::distance_dtw_csiChroma; type = 2; break; - case 4: dist.csiChord = calcul::distance_dtw_csiChord; + case distance_type::csiChord: dist.csiChord = calcul::distance_dtw_csiChord; type = 3; break; } diff --git a/SequenceComparison/operation.cpp b/SequenceComparison/operation.cpp index 7e87cbfdccc73230279ffb6a137f388c3e27f570..3e6c8af97f9582128f64b312a9e08f6d28a54348 100644 --- a/SequenceComparison/operation.cpp +++ b/SequenceComparison/operation.cpp @@ -30,16 +30,16 @@ result_operation operation::operation_single(input_data_single const &data, para switch (params.operation) { - case 0: //op 0 + case operation_type::op_method: //op 1 result = params.shift ? dtw_shift(data, params, f1) : dtw(data, params, f1); break; - case 1: //op 1 + case operation_type::op_similarity_matrix: //op 2 result = params.shift ? similarityMatrix_shift_omp(data, params, f1) : similarityMatrix_omp(data, params, f1); break; - case 2: //op 2 + case operation_type::op_similarity_evaluation: //op 3 result = clustering(data, params, f1); break; - case 3: //op 3 + case operation_type::op_local_alignment_clustering: //op 4 result = pdtw_localClustering(data, params, f1); //(Kocyan) break; default: @@ -68,14 +68,14 @@ result_operation operation::operation_dual(input_data const &data, parameter con result_operation result; switch (params.operation) - { - case 1: //op 1 + { + case operation_type::op_similarity_matrix: //op 2 result = params.shift ? similarityMatrix_shift_omp(data, params, f1) : similarityMatrix_omp(data, params, f1); break; - case 2: //op 2 + case operation_type::op_similarity_evaluation: //op 3 result = clustering(data, params, f1); break; - case 3: + case operation_type::op_local_alignment_clustering: //op 4 cout << ("error: Operation 3 is not defined for query data. Please use -single flag or remove query data."); exit(0); break; diff --git a/SequenceComparison/operation.h b/SequenceComparison/operation.h index d98e4cefb752a4de78ba8056cf4d4194ab570a27..9f7ae9729e88c1f4a4b49c58fb79a01742abd5a8 100644 --- a/SequenceComparison/operation.h +++ b/SequenceComparison/operation.h @@ -7,6 +7,13 @@ typedef result_dtw(*METHOD)(input_method const &input, input_info const &info, parameter const ¶ms); typedef result_pdtw(*PDTW)(vtr3<double> const &input, input_info const &info, parameter const ¶ms); +enum operation_type { + op_method = 1, + op_similarity_matrix = 2, + op_similarity_evaluation = 3, + op_local_alignment_clustering = 4 +}; + ///Contains operation methods which wraps use of dtw, lcss and pdtw methods. ///@details operation 0: Calculates classic dtw or lcss method.<br> ///Flags required: -in, -op 0 diff --git a/SequenceComparison/parameter.h b/SequenceComparison/parameter.h index 22ce333f6f040b773fe44b9ead3c238535c406f3..4aa4a63db39333ec67dcad3dd5d8a3c966832aca 100644 --- a/SequenceComparison/parameter.h +++ b/SequenceComparison/parameter.h @@ -92,7 +92,7 @@ public: precision(3), time(false), printOutput(false), debugInfo(false), shift(false), scoreReversed(false), localAlignment(false), block(0), tmp_exp(false), experiment(false), simd(false), memoization(false), lowerBound(false), - method("dtw"), operation(0), distance (1), scoreType(0), ram(5000), clusters(1), ve_window(0), ve_smooth(0), + method("dtw"), operation(1), distance (1), scoreType(0), ram(5000), clusters(1), ve_window(0), ve_smooth(0), w(1), fw(0), fd(1), delta(100000), epsilon(1), subsequence(0), treshold_csi(0.07), treshold_t(10), treshold_a(10), treshold_e(10), treshold_l(3), /*recall(10),*/ relax(0), pre_paa(1), pre_reduce(0), pre_sax(0), pre_prolong(0), pre_smooth(0), pre_interpolate(), pre_normalizeZ(), pre_normalizeBy(-1),