diff --git a/README.md b/README.md index 64d4007249b07bdf1891aab805d94c4ab7e253ec..6b7d47ef295c4806eac75aee63deaac27d59265b 100644 --- a/README.md +++ b/README.md @@ -108,7 +108,7 @@ reticulate::virtualenv_install("hmch", c("-r", "requirements.txt")) Now You can execute the script by calling ```bash -R -e "rmarkdown::render(get_features.Rmd)" +R -e "rmarkdown::render(get_features.Rmd, output_file = '/output/features.html')" ``` ## Step 2 Classification @@ -127,7 +127,7 @@ renv::restore() ### Model execution ```bash -R -e "rmarkdown::render(get_results.Rmd)" +R -e "rmarkdown::render(get_results.Rmd, output_file = '/output/classification.html')" ``` At the same time this file reproduce figures from an article which is now under review and later we will link it when it is published. diff --git a/docker-compose.yml b/docker-compose.yml index 6ce9c85e1df8341720255eae09be87e395086918..1a3d328ad044b477815648ad96008b7881c0b8cd 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -12,4 +12,4 @@ services: - ./data_zenodo:/zenodo_dir - ./output:/output command: ["R", "--quiet", "-e", "rmarkdown::render('get_results.Rmd', output_file = '/output/classification.html')"] - #command: ["R", "--quiet", "-e", "rmarkdown::render('get_features.Rmd', output_file = '/output/classification.html')"] \ No newline at end of file + #command: ["R", "--quiet", "-e", "rmarkdown::render('get_features.Rmd', output_file = '/output/features.html')"] \ No newline at end of file