From 2f48a9ad26fa2c6904712c05d4ddb87fa0ffa85f Mon Sep 17 00:00:00 2001
From: Tomas Martinovic <tomas.martinovic@vsb.cz>
Date: Thu, 19 Sep 2024 16:58:34 +0200
Subject: [PATCH] update readme and features output name
---
README.md | 4 ++--
docker-compose.yml | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/README.md b/README.md
index 64d4007..6b7d47e 100644
--- a/README.md
+++ b/README.md
@@ -108,7 +108,7 @@ reticulate::virtualenv_install("hmch", c("-r", "requirements.txt"))
Now You can execute the script by calling
```bash
-R -e "rmarkdown::render(get_features.Rmd)"
+R -e "rmarkdown::render(get_features.Rmd, output_file = '/output/features.html')"
```
## Step 2 Classification
@@ -127,7 +127,7 @@ renv::restore()
### Model execution
```bash
-R -e "rmarkdown::render(get_results.Rmd)"
+R -e "rmarkdown::render(get_results.Rmd, output_file = '/output/classification.html')"
```
At the same time this file reproduce figures from an article which is now under review and later we will link it when it is published.
diff --git a/docker-compose.yml b/docker-compose.yml
index 6ce9c85..1a3d328 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -12,4 +12,4 @@ services:
- ./data_zenodo:/zenodo_dir
- ./output:/output
command: ["R", "--quiet", "-e", "rmarkdown::render('get_results.Rmd', output_file = '/output/classification.html')"]
- #command: ["R", "--quiet", "-e", "rmarkdown::render('get_features.Rmd', output_file = '/output/classification.html')"]
\ No newline at end of file
+ #command: ["R", "--quiet", "-e", "rmarkdown::render('get_features.Rmd', output_file = '/output/features.html')"]
\ No newline at end of file
--
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