From 1c1477dde433ffbab4f435c2bccdb4161850c6fa Mon Sep 17 00:00:00 2001
From: Tobias Pietzsch <tobias.pietzsch@gmail.com>
Date: Tue, 19 Aug 2014 15:19:48 +0200
Subject: [PATCH] catch (and ignore) NumberFormatException
---
core/src/main/java/tgmm/ShowEllipsoids.java | 2 +-
core/src/main/java/tgmm/TgmmXmlReader.java | 66 +++++++--------------
2 files changed, 23 insertions(+), 45 deletions(-)
diff --git a/core/src/main/java/tgmm/ShowEllipsoids.java b/core/src/main/java/tgmm/ShowEllipsoids.java
index 8a2e88a0..6ec22315 100644
--- a/core/src/main/java/tgmm/ShowEllipsoids.java
+++ b/core/src/main/java/tgmm/ShowEllipsoids.java
@@ -118,7 +118,7 @@ public class ShowEllipsoids
final Interval imgSourceInterval = imgSource.getSource( timepointIndex, 0 );
final HashMap< Integer, EllipsoidRealRandomAccessible > timepointIndexToEllipsoidAccessible = new HashMap< Integer, EllipsoidRealRandomAccessible >();
- for ( int tp = 240; tp < 248; ++tp )
+ for ( int tp = 240; tp < 250; ++tp )
{
final int timepointId = tp + 1;
final String tgmmFilename = "/Users/pietzsch/Desktop/data/Fernando/extract/GMEMfinalResult_frame0" + timepointId + ".xml";
diff --git a/core/src/main/java/tgmm/TgmmXmlReader.java b/core/src/main/java/tgmm/TgmmXmlReader.java
index 759b0b8d..b95720dc 100644
--- a/core/src/main/java/tgmm/TgmmXmlReader.java
+++ b/core/src/main/java/tgmm/TgmmXmlReader.java
@@ -11,24 +11,6 @@ import org.jdom2.input.SAXBuilder;
public class TgmmXmlReader
{
- public static void main( final String[] args )
- {
- try
- {
- final ArrayList< Gaussian > gaussians = read( "/Users/pietzsch/Desktop/data/Fernando/extract/GMEMfinalResult_frame0249.xml" );
-// for ( final Gaussian g : gaussians )
-// System.out.println( g );
- }
- catch ( final IOException e )
- {
- e.printStackTrace();
- }
- catch ( final JDOMException e )
- {
- e.printStackTrace();
- }
- }
-
public static class Gaussian
{
private final double nu;
@@ -110,24 +92,12 @@ public class TgmmXmlReader
public static double[] getDoubleArrayAttribute( final Element parent, final String name )
{
- try
- {
- final String text = parent.getAttributeValue( name );
- final String[] entries = text.split( "\\s+" );
- final double[] array = new double[ entries.length ];
- for ( int i = 0; i < entries.length; ++i )
- array[ i ] = Double.parseDouble( entries[ i ] );
- return array;
- }
- catch ( final Exception e )
- {
- final String text = parent.getAttributeValue( name );
- System.out.println( text );
- final String[] entries = text.split( "\\s+" );
- for ( int i = 0; i < entries.length; ++i )
- System.out.println( entries[ i ] );
- return null;
- }
+ final String text = parent.getAttributeValue( name );
+ final String[] entries = text.split( "\\s+" );
+ final double[] array = new double[ entries.length ];
+ for ( int i = 0; i < entries.length; ++i )
+ array[ i ] = Double.parseDouble( entries[ i ] );
+ return array;
}
public static int getIntAttribute( final Element parent, final String name )
@@ -145,14 +115,22 @@ public class TgmmXmlReader
final ArrayList< Gaussian > gaussians = new ArrayList< Gaussian >();
for ( final Element elem : gaussianMixtureModels )
{
- final double nu = getDoubleAttribute( elem, "nu" );
- final double[] m = getDoubleArrayAttribute( elem, "m" );
- final double[] W = getDoubleArrayAttribute( elem, "W" );
- final int id = getIntAttribute( elem, "id" );
- final int lineage = getIntAttribute( elem, "lineage" );
- final int parent = getIntAttribute( elem, "parent" );
-
- gaussians.add( new Gaussian( nu, m, W, id, lineage, parent ) );
+ try
+ {
+ final double nu = getDoubleAttribute( elem, "nu" );
+ final double[] m = getDoubleArrayAttribute( elem, "m" );
+ final double[] W = getDoubleArrayAttribute( elem, "W" );
+ final int id = getIntAttribute( elem, "id" );
+ final int lineage = getIntAttribute( elem, "lineage" );
+ final int parent = getIntAttribute( elem, "parent" );
+
+ gaussians.add( new Gaussian( nu, m, W, id, lineage, parent ) );
+ }
+ catch ( final NumberFormatException e )
+ {
+ e.printStackTrace();
+ System.out.println( "ignoring " + elem );
+ }
}
return gaussians;
}
--
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