Commit 58d86bcb authored by tpietzsch's avatar tpietzsch
Browse files

Deprecate classes related to legacy SPIM_Registration import.

(should be removed in major release 8.0.0)
parent 1fcd0c0b
......@@ -68,6 +68,7 @@ import mpicbg.spim.io.SPIMConfiguration;
import mpicbg.spim.io.TextFileAccess;
import spimopener.SPIMExperiment;
@Deprecated
@Plugin(type = Command.class,
menuPath = "Plugins>BigDataViewer>Deprecated>Export Fused Sequence as XML/HDF5")
public class ExportSpimFusionPlugIn implements Command
......
......@@ -45,6 +45,7 @@ import mpicbg.spim.io.SPIMConfiguration;
import mpicbg.spim.io.TextFileAccess;
import spimopener.SPIMExperiment;
@Deprecated
@Plugin(type = Command.class,
menuPath = "Plugins>BigDataViewer>Deprecated>Export Spim Sequence as XML/HDF5")
public class ExportSpimSequencePlugIn implements Command
......
......@@ -20,6 +20,7 @@ import mpicbg.spim.data.sequence.VoxelDimensions;
import net.imglib2.Dimensions;
import net.imglib2.realtransform.AffineTransform3D;
@Deprecated
public class FusionResult
{
private final SequenceDescriptionMinimal desc;
......
......@@ -42,6 +42,7 @@ public class Scripting
* @return an initialized {@link SpimRegistrationSequence} sequence.
* @throws ConfigurationParserException
*/
@Deprecated
public static SpimRegistrationSequence createSpimRegistrationSequence(
final String huiskenExperimentXmlFile,
final String channels,
......@@ -85,6 +86,7 @@ public class Scripting
* @return an initialized {@link SpimRegistrationSequence} sequence.
* @throws ConfigurationParserException
*/
@Deprecated
public static SpimRegistrationSequence createSpimRegistrationSequence(
final String inputDirectory,
final String inputFilePattern,
......@@ -108,6 +110,7 @@ public class Scripting
* @param cropOffsetZ
* @return
*/
@Deprecated
public static Map< Integer, AffineTransform3D > getFusionTransforms(
final SpimRegistrationSequence spimseq,
final int scale,
......@@ -130,6 +133,7 @@ public class Scripting
* @param fusionTransforms
* @return
*/
@Deprecated
public static FusionResult createFusionResult(
final SpimRegistrationSequence spimseq,
final String filepath,
......
......@@ -35,6 +35,7 @@ import net.imglib2.realtransform.AffineTransform3D;
import spim.vecmath.Point3f;
import spimopener.SPIMExperiment;
@Deprecated
public class SpimRegistrationSequence
{
private final SequenceDescriptionMinimal sequenceDescription;
......
......@@ -45,6 +45,7 @@ import net.imglib2.view.Views;
*
* @author Tobias Pietzsch &lt;tobias.pietzsch@gmail.com&gt;
*/
@Deprecated
public class FusionImageLoader< T extends RealType< T > > implements ImgLoader
{
private final String pattern;
......
......@@ -25,6 +25,7 @@ import spimopener.SPIMExperiment;
*
* @author Tobias Pietzsch &lt;tobias.pietzsch@gmail.com&gt;
*/
@Deprecated
public class HuiskenImageLoader implements BasicImgLoader
{
private final File expFile;
......
......@@ -34,6 +34,7 @@ import net.imglib2.type.numeric.integer.UnsignedShortType;
*
* @author Tobias Pietzsch &lt;tobias.pietzsch@gmail.com&gt;
*/
@Deprecated
public class LegacyStackImageLoader implements LegacyBasicImgLoader< UnsignedShortType >
{
private final ImgOpener opener;
......
......@@ -18,6 +18,7 @@ import net.imglib2.type.numeric.integer.UnsignedShortType;
*
* @author Tobias Pietzsch &lt;tobias.pietzsch@gmail.com&gt;
*/
@Deprecated
public class StackImageLoader extends LegacyBasicImgLoaderWrapper< UnsignedShortType, LegacyStackImageLoader >
{
public StackImageLoader( final HashMap< ViewId, String > filenames, final boolean useImageJOpener )
......
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