Commit 630e5057 authored by tpietzsch's avatar tpietzsch
Browse files

Deprecate classes related to legacy SPIM_Registration import.

parent d3414a55
......@@ -29,6 +29,7 @@ import mpicbg.spim.data.generic.sequence.BasicViewSetup;
*
* @author Tobias Pietzsch <tobias.pietzsch@gmail.com>
*/
@Deprecated
public class FixAbsolutePathsInHdf5Partitions
{
public static void fix( final String xmlFilename ) throws SpimDataException, IOException
......
......@@ -17,6 +17,7 @@ import mpicbg.spim.data.SpimDataException;
import mpicbg.spim.io.ConfigurationParserException;
import net.imglib2.realtransform.AffineTransform3D;
@Deprecated
public class Scripting
{
/**
......@@ -163,6 +164,7 @@ public class Scripting
* is used to generate paths for the partitions.
* @return list of partitions.
*/
@Deprecated
public static ArrayList< Partition > split(
final SetupAggregator aggregator,
final int timepointsPerPartition,
......
......@@ -34,6 +34,7 @@ import net.imglib2.img.cell.CellImg;
*
* @author Tobias Pietzsch &lt;tobias.pietzsch@gmail.com&gt;
*/
@Deprecated
public class SetupAggregator
{
/**
......@@ -80,7 +81,7 @@ public class SetupAggregator
/**
* Add a new {@link BasicViewSetup} to the aggregator.
*
* Adds a setup of the given source {@link SpimRegistrationSequence} to the
* Adds a setup of the given source {@link AbstractSequenceDescription} to the
* aggregator. A reference to the source sequence is kept and the source
* {@link ViewRegistrations} are copied. In the viewer format, every image
* is stored in multiple resolutions. The resolutions are described as int[]
......@@ -181,6 +182,7 @@ public class SetupAggregator
* "{32,32,32}, {16,16,8}, {8,8,8}" where each "{...}"
* defines one subdivision.
*/
@Deprecated
public void addSetup( final SpimRegistrationSequence sequence, final int setupIndex, final String resolutionsString, final String subdivisionsString )
{
final AbstractSequenceDescription< ?, ?, ? > desc = sequence.getSequenceDescription();
......@@ -222,6 +224,7 @@ public class SetupAggregator
* the set of subdivisions to store. each nested int[] array
* defines one subdivision.
*/
@Deprecated
public void addSetup( final SpimRegistrationSequence sequence, final int setupIndex, final int[][] resolutions, final int[][] subdivisions )
{
final AbstractSequenceDescription< ?, ?, ? > desc = sequence.getSequenceDescription();
......@@ -257,6 +260,7 @@ public class SetupAggregator
* "{32,32,32}, {16,16,8}, {8,8,8}" where each "{...}"
* defines one subdivision.
*/
@Deprecated
public void addSetups( final SpimRegistrationSequence sequence, final String resolutionsString, final String subdivisionsString )
{
for ( int s = 0; s < sequence.getSequenceDescription().getViewSetups().size(); ++s )
......@@ -286,6 +290,7 @@ public class SetupAggregator
* the set of subdivisions to store. each nested int[] array
* defines one subdivision.
*/
@Deprecated
public void addSetups( final SpimRegistrationSequence sequence, final int[][] resolutions, final int[][] subdivisions )
{
for ( int s = 0; s < sequence.getSequenceDescription().getViewSetups().size(); ++s )
......@@ -317,6 +322,7 @@ public class SetupAggregator
* "{32,32,32}, {16,16,8}, {8,8,8}" where each "{...}"
* defines one subdivision.
*/
@Deprecated
public void addSetups( final FusionResult fusionResult, final String resolutionsString, final String subdivisionsString )
{
final int[][] resolutions = PluginHelper.parseResolutionsString( resolutionsString );
......@@ -354,6 +360,7 @@ public class SetupAggregator
* the set of subdivisions to store. each nested int[] array
* defines one subdivision.
*/
@Deprecated
public void addSetups( final FusionResult fusionResult, final int[][] resolutions, final int[][] subdivisions )
{
if ( resolutions.length != subdivisions.length )
......
......@@ -13,6 +13,7 @@ import mpicbg.spim.data.sequence.ViewSetup;
*
* @author Tobias Pietzsch &lt;tobias.pietzsch@gmail.com&gt;
*/
@Deprecated
public class ViewSetupWrapper extends BasicViewSetup
{
private final AbstractSequenceDescription< ?, ?, ? > sourceSequence;
......
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