GitLab

Signed-off-by: Tobias Pietzsch <tpietzsch@dev.loci.wisc.edu>

Among other benefits, this allows the plugins to be discovered
efficiently simply by being on the classpath, rather than needing a
plugins.dir system property pointing to a single location with all
the JAR files, which must then be scanned for plugins.config files.

This is a breaking API change, so bumps to major version 4.

Signed-off-by: Curtis Rueden <ctrueden@wisc.edu>

Dependencies should be defined in properties,
so the melting-pot can do its job.

Also, SPIM_Registration 5.0.13 is no longer
afflicted by the OME dependency clashes.

update to ImgLib2 v4

Without this, failed builds of master trigger another "mvn install".

See: https://gist.github.com/ctrueden/ae0f024a0cdf2cb53c915d75b0759553

See:
http://forum.imagej.net/t/split-boms-from-parent-configuration/2563

Signed-off-by: Jenkins <jenkins@imagej.net>

And remove the superfluous (and prone to obsolescence) other info.

Signed-off-by: Jenkins <jenkins@imagej.net>

fix incorrect scale when importing from BDV files (https://github.com/bigdataviewer/bigdataviewer_fiji/issues/3)

All the necessary rules migrated to pom-scijava quite awhile ago.

See: http://imagej.net/Team

Accomplished using:
    mvn tidy:pom

This upgrades many dependencies. In particular:

* Mines JTK is now at a version licensed under the APLv2, and thus
  compatible with the GPLv3. It now requires Java 7.

* We are now using the SciJava fork of Java 3D 1.6, which lets us ship
  Java 3D as a normal dependency, avoiding deployment issues. It also
  now requires Java 7.

Hence, this plugin now requires Java 7 by extension.

A complete list of dependency upgrades follows.

== Updated dependency versions ==

* 3D_Viewer: 3.1.0 -> 4.0.1
* SPIM_Registration: 3.0.0 -> 4.0.0
* bigdataviewer-core: 2.0.0 -> 2.1.0
* guava: 17.0 -> 18.0
* ij1-patcher: 0.12.2 -> 0.12.3
* ij: 1.50a -> 1.50e
* imagej-common: 0.17.0 -> 0.19.0
* imglib2-algorithm: 0.3.1 -> 0.3.3
* imglib2-roi: 0.3.2 -> 0.4.2
* imglib2: 2.4.0 -> 2.5.0
* jdom2: 2.0.5 -> 2.0.6
* legacy-imglib1: 1.1.4-DEPRECATED -> 1.1.5
* mines-jtk: 20100113 -> 20151125
* mpicbg: 1.0.2 -> 1.1.1
* native-lib-loader: 2.1.1 -> 2.1.3
* scifio: 0.25.0 -> 0.27.1
* scijava-common: 2.46.0 -> 2.50.1
* spim_data: 2.0.0 -> 2.0.1
* vecmath: 1.5.2 -> 1.6.0-scijava-2
* Bio-Formats libraries: 5.1.3 -> 5.1.5

== New dependencies added ==

* imagej-deprecated: 0.1.1 (for net.imglib2.meta.ImgPlus)
* gluegen-rt: 2.3.2 (from 3D Viewer)
* j3dcore: 1.6.0-scijava-2 (from 3D Viewer)
* j3dutils: 1.6.0-scijava-2 (from 3D Viewer)
* jogl-all: 2.3.2 (from 3D Viewer)

Signed-off-by: Jenkins <jenkins@imagej.net>

Signed-off-by: Jenkins <jenkins@imagej.net>

Make safer way to handle json reader