diff --git a/src/main/java/cz/it4i/qcmp/compression/ImageDecompressor.java b/src/main/java/cz/it4i/qcmp/compression/ImageDecompressor.java
index 1c2308f7eba25db69452317776d28c9eaa6bab4c..b972a5213e0979d3a33098233617ef31cffcd2d3 100644
--- a/src/main/java/cz/it4i/qcmp/compression/ImageDecompressor.java
+++ b/src/main/java/cz/it4i/qcmp/compression/ImageDecompressor.java
@@ -109,7 +109,7 @@ public class ImageDecompressor extends CompressorDecompressorBase {
if (validFile && options.isVerbose()) {
final String prefix = header.getQuantizationType() != QuantizationType.Vector3D ? "Plane" : "Voxel layer";
- final long[] planeDataSizes = header.getPlaneDataSizes();
+ final long[] planeDataSizes = header.getChunkDataSizes();
long planeIndex = 0;
for (final long planeDataSize : planeDataSizes) {
logBuilder.append(String.format("%s %d: %d Bytes\n", prefix, planeIndex++, planeDataSize));
@@ -244,7 +244,7 @@ public class ImageDecompressor extends CompressorDecompressorBase {
dis.reset();
- header.setPlaneDataSizes(chunkSizes);
+ header.setChunkDataSizes(chunkSizes);
return cachedDecompressor.decompressStreamMode(dis, header);
diff --git a/src/main/java/cz/it4i/qcmp/compression/SQImageDecompressor.java b/src/main/java/cz/it4i/qcmp/compression/SQImageDecompressor.java
index f568653160b0058217391e3dbd3c922629de7b57..b61f409e2d3517e01f193ad28fc1f74d5fa5c2a8 100644
--- a/src/main/java/cz/it4i/qcmp/compression/SQImageDecompressor.java
+++ b/src/main/java/cz/it4i/qcmp/compression/SQImageDecompressor.java
@@ -73,7 +73,7 @@ public class SQImageDecompressor extends CompressorDecompressorBase implements I
reportStatusToListeners(String.format("Decompressing plane %d...", planeIndex));
byte[] decompressedPlaneData = null;
- final int planeDataSize = (int) header.getPlaneDataSizes()[planeIndex];
+ final int planeDataSize = (int) header.getChunkDataSizes()[planeIndex];
try (final InBitStream inBitStream = new InBitStream(compressedStream,
header.getBitsPerCodebookIndex(),
planeDataSize)) {
@@ -140,7 +140,7 @@ public class SQImageDecompressor extends CompressorDecompressorBase implements I
}
assert (codebook != null && huffmanDecoder != null);
- final int planeDataSize = (int) header.getPlaneDataSizes()[planeIndex];
+ final int planeDataSize = (int) header.getChunkDataSizes()[planeIndex];
try (final InBitStream inBitStream = new InBitStream(compressedStream, header.getBitsPerCodebookIndex(), planeDataSize)) {
inBitStream.fillEntireBuffer();
inBitStream.setAllowReadFromUnderlyingStream(false);
diff --git a/src/main/java/cz/it4i/qcmp/compression/VQImageDecompressor.java b/src/main/java/cz/it4i/qcmp/compression/VQImageDecompressor.java
index 97f2ad8a63274c81e98c56a7a31849c52f684c37..6d42448ee4912b2f2cb6881a042886e07f3d6dea 100644
--- a/src/main/java/cz/it4i/qcmp/compression/VQImageDecompressor.java
+++ b/src/main/java/cz/it4i/qcmp/compression/VQImageDecompressor.java
@@ -139,7 +139,7 @@ public class VQImageDecompressor extends CompressorDecompressorBase implements I
assert (codebook != null && huffmanDecoder != null);
- final int planeDataSize = (int) header.getPlaneDataSizes()[planeIndex];
+ final int planeDataSize = (int) header.getChunkDataSizes()[planeIndex];
try (final InBitStream inBitStream = new InBitStream(compressedStream,
header.getBitsPerCodebookIndex(),
planeDataSize)) {
@@ -183,7 +183,7 @@ public class VQImageDecompressor extends CompressorDecompressorBase implements I
for (int planeIndex = 0; planeIndex < planeCountForDecompression; planeIndex++) {
- final int planeDataSize = (int) header.getPlaneDataSizes()[planeIndex];
+ final int planeDataSize = (int) header.getChunkDataSizes()[planeIndex];
try (final InBitStream inBitStream = new InBitStream(compressedStream,
header.getBitsPerCodebookIndex(),
planeDataSize)) {
@@ -253,7 +253,7 @@ public class VQImageDecompressor extends CompressorDecompressorBase implements I
? header.getImageSizeZ()
: (voxelLayerDepth + (voxelLayerIndex * voxelLayerDepth));
final V3i currentVoxelLayerDims = new V3i(header.getImageSizeX(), header.getImageSizeY(), toZ - fromZ);
- final int voxelLayerDataSize = (int) header.getPlaneDataSizes()[voxelLayerIndex];
+ final int voxelLayerDataSize = (int) header.getChunkDataSizes()[voxelLayerIndex];
final int voxelLayerVoxelCount = Voxel.calculateRequiredVoxelCount(currentVoxelLayerDims, voxelDims);
final int[][] decompressedVoxels = new int[voxelLayerVoxelCount][vectorSize];
@@ -311,7 +311,7 @@ public class VQImageDecompressor extends CompressorDecompressorBase implements I
? header.getImageSizeZ()
: (voxelLayerDepth + (voxelLayerIndex * voxelLayerDepth));
final V3i currentVoxelLayerDims = new V3i(header.getImageSizeX(), header.getImageSizeY(), toZ - fromZ);
- final int voxelLayerDataSize = (int) header.getPlaneDataSizes()[voxelLayerIndex];
+ final int voxelLayerDataSize = (int) header.getChunkDataSizes()[voxelLayerIndex];
final int voxelLayerVoxelCount = Voxel.calculateRequiredVoxelCount(currentVoxelLayerDims, voxelDims);
final int[][] decompressedVoxels = new int[voxelLayerVoxelCount][vectorSize];
diff --git a/src/main/java/cz/it4i/qcmp/fileformat/QCMPFileHeaderV1.java b/src/main/java/cz/it4i/qcmp/fileformat/QCMPFileHeaderV1.java
index 677a3f1204681fd9e223167c284191826886f216..f97fbf4581fbbc6af44ce6e67df3cdcd33cedf66 100644
--- a/src/main/java/cz/it4i/qcmp/fileformat/QCMPFileHeaderV1.java
+++ b/src/main/java/cz/it4i/qcmp/fileformat/QCMPFileHeaderV1.java
@@ -19,20 +19,20 @@ public class QCMPFileHeaderV1 implements IFileHeader, Cloneable {
//endregion
//region Header fields
- private String magicValue = MAGIC_VALUE;
- private QuantizationType quantizationType;
- private byte bitsPerCodebookIndex;
- private boolean codebookPerPlane;
+ protected String magicValue = MAGIC_VALUE;
+ protected QuantizationType quantizationType;
+ protected byte bitsPerCodebookIndex;
+ protected boolean codebookPerPlane;
- private int imageSizeX;
- private int imageSizeY;
- private int imageSizeZ;
+ protected int imageSizeX;
+ protected int imageSizeY;
+ protected int imageSizeZ;
- private int vectorSizeX;
- private int vectorSizeY;
- private int vectorSizeZ;
+ protected int vectorSizeX;
+ protected int vectorSizeY;
+ protected int vectorSizeZ;
- private long[] planeDataSizes;
+ protected long[] chunkDataSizes;
//endregion
//region IFileHeader implementation
@@ -121,10 +121,10 @@ public class QCMPFileHeaderV1 implements IFileHeader, Cloneable {
? imageSizeZ
: VQImageCompressor.calculateVoxelLayerCount(imageSizeZ, vectorSizeZ);
- planeDataSizes = new long[chunkCount];
+ chunkDataSizes = new long[chunkCount];
for (int i = 0; i < chunkCount; i++) {
final long readValue = inputStream.readInt();
- planeDataSizes[i] = (readValue & 0x00000000FFFFFFFFL);
+ chunkDataSizes[i] = (readValue & 0x00000000FFFFFFFFL);
}
}
@@ -211,7 +211,7 @@ public class QCMPFileHeaderV1 implements IFileHeader, Cloneable {
// Indices are encoded using huffman. Plane data size is written in the header.
long totalPlaneDataSize = 0;
- for (final long planeDataSize : planeDataSizes) {
+ for (final long planeDataSize : chunkDataSizes) {
totalPlaneDataSize += planeDataSize;
}
@@ -231,7 +231,7 @@ public class QCMPFileHeaderV1 implements IFileHeader, Cloneable {
// Indices are encoded using huffman. Plane data size is written in the header.
long totalPlaneDataSize = 0;
- for (final long planeDataSize : planeDataSizes) {
+ for (final long planeDataSize : chunkDataSizes) {
totalPlaneDataSize += planeDataSize;
}
return (codebookDataSize + totalPlaneDataSize);
@@ -361,12 +361,12 @@ public class QCMPFileHeaderV1 implements IFileHeader, Cloneable {
vectorSizeZ = vectorDims.getZ();
}
- public long[] getPlaneDataSizes() {
- return planeDataSizes;
+ public long[] getChunkDataSizes() {
+ return chunkDataSizes;
}
- public void setPlaneDataSizes(final long[] sizes) {
- planeDataSizes = sizes;
+ public void setChunkDataSizes(final long[] sizes) {
+ chunkDataSizes = sizes;
}
public long getHeaderSize() {