From 90514ea6daf17343c8f48305c5ae8b9ca2687cf1 Mon Sep 17 00:00:00 2001
From: Vojtech Moravec <vojtech.moravec.st@vsb.cz>
Date: Fri, 23 Oct 2020 14:22:32 +0200
Subject: [PATCH] Fix InputDataInfo configuration in parseSCIFIOFileArguments.
---
.../java/cz/it4i/qcmp/cli/CompressionOptionsCLIParser.java | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/src/main/java/cz/it4i/qcmp/cli/CompressionOptionsCLIParser.java b/src/main/java/cz/it4i/qcmp/cli/CompressionOptionsCLIParser.java
index 960de94..794b16c 100644
--- a/src/main/java/cz/it4i/qcmp/cli/CompressionOptionsCLIParser.java
+++ b/src/main/java/cz/it4i/qcmp/cli/CompressionOptionsCLIParser.java
@@ -204,10 +204,9 @@ public class CompressionOptionsCLIParser extends CompressionOptions implements C
private void parseSCIFIOFileArguments(final StringBuilder errorBuilder, final String[] inputFileArguments) {
- getInputDataInfo().setDataLoaderType(InputData.DataLoaderType.SCIFIOLoader);
final Reader reader;
try {
- reader = ScifioWrapper.getReader(getInputDataInfo().getFilePath());
+ reader = ScifioWrapper.getReader(inputFileArguments[0]);
} catch (final IOException | FormatException e) {
parseErrorOccurred = true;
errorBuilder.append("Failed to get SCIFIO reader for file.\n");
@@ -215,7 +214,6 @@ public class CompressionOptionsCLIParser extends CompressionOptions implements C
return;
}
-
final int imageCount = reader.getImageCount();
if (imageCount != 1) {
parseErrorOccurred = true;
@@ -255,6 +253,7 @@ public class CompressionOptionsCLIParser extends CompressionOptions implements C
setInputDataInfo(new FileInputData(inputFileArguments[0], new HyperStackDimensions((int) planeWidth,
(int) planeHeight,
(int) planeCount)));
+ getInputDataInfo().setDataLoaderType(InputData.DataLoaderType.SCIFIOLoader);
if (inputFileArguments.length > 1) {
parseInputFilePlaneOptions(errorBuilder, inputFileArguments, 1);
--
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