Commit a388cb5b authored by Jan Zapletal's avatar Jan Zapletal

removed Eigen

parent 80f0992f
include(RegexUtils)
test_escape_string_as_regex()
file(GLOB Eigen_directory_files "*")
escape_string_as_regex(ESCAPED_CMAKE_CURRENT_SOURCE_DIR "${CMAKE_CURRENT_SOURCE_DIR}")
foreach(f ${Eigen_directory_files})
if(NOT f MATCHES "\\.txt" AND NOT f MATCHES "${ESCAPED_CMAKE_CURRENT_SOURCE_DIR}/[.].+" AND NOT f MATCHES "${ESCAPED_CMAKE_CURRENT_SOURCE_DIR}/src")
list(APPEND Eigen_directory_files_to_install ${f})
endif()
endforeach(f ${Eigen_directory_files})
install(FILES
${Eigen_directory_files_to_install}
DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen COMPONENT Devel
)
install(DIRECTORY src DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen COMPONENT Devel FILES_MATCHING PATTERN "*.h")
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_CHOLESKY_MODULE_H
#define EIGEN_CHOLESKY_MODULE_H
#include "Core"
#include "src/Core/util/DisableStupidWarnings.h"
/** \defgroup Cholesky_Module Cholesky module
*
*
*
* This module provides two variants of the Cholesky decomposition for selfadjoint (hermitian) matrices.
* Those decompositions are also accessible via the following methods:
* - MatrixBase::llt()
* - MatrixBase::ldlt()
* - SelfAdjointView::llt()
* - SelfAdjointView::ldlt()
*
* \code
* #include <Eigen/Cholesky>
* \endcode
*/
#include "src/Cholesky/LLT.h"
#include "src/Cholesky/LDLT.h"
#ifdef EIGEN_USE_LAPACKE
#include "src/misc/lapacke.h"
#include "src/Cholesky/LLT_LAPACKE.h"
#endif
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_CHOLESKY_MODULE_H
/* vim: set filetype=cpp et sw=2 ts=2 ai: */
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_CHOLMODSUPPORT_MODULE_H
#define EIGEN_CHOLMODSUPPORT_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
extern "C" {
#include <cholmod.h>
}
/** \ingroup Support_modules
* \defgroup CholmodSupport_Module CholmodSupport module
*
* This module provides an interface to the Cholmod library which is part of the <a href="http://www.suitesparse.com">suitesparse</a> package.
* It provides the two following main factorization classes:
* - class CholmodSupernodalLLT: a supernodal LLT Cholesky factorization.
* - class CholmodDecomposiiton: a general L(D)LT Cholesky factorization with automatic or explicit runtime selection of the underlying factorization method (supernodal or simplicial).
*
* For the sake of completeness, this module also propose the two following classes:
* - class CholmodSimplicialLLT
* - class CholmodSimplicialLDLT
* Note that these classes does not bring any particular advantage compared to the built-in
* SimplicialLLT and SimplicialLDLT factorization classes.
*
* \code
* #include <Eigen/CholmodSupport>
* \endcode
*
* In order to use this module, the cholmod headers must be accessible from the include paths, and your binary must be linked to the cholmod library and its dependencies.
* The dependencies depend on how cholmod has been compiled.
* For a cmake based project, you can use our FindCholmod.cmake module to help you in this task.
*
*/
#include "src/CholmodSupport/CholmodSupport.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_CHOLMODSUPPORT_MODULE_H
This diff is collapsed.
#include "Core"
#include "LU"
#include "Cholesky"
#include "QR"
#include "SVD"
#include "Geometry"
#include "Eigenvalues"
#include "Dense"
#include "Sparse"
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_EIGENVALUES_MODULE_H
#define EIGEN_EIGENVALUES_MODULE_H
#include "Core"
#include "src/Core/util/DisableStupidWarnings.h"
#include "Cholesky"
#include "Jacobi"
#include "Householder"
#include "LU"
#include "Geometry"
/** \defgroup Eigenvalues_Module Eigenvalues module
*
*
*
* This module mainly provides various eigenvalue solvers.
* This module also provides some MatrixBase methods, including:
* - MatrixBase::eigenvalues(),
* - MatrixBase::operatorNorm()
*
* \code
* #include <Eigen/Eigenvalues>
* \endcode
*/
#include "src/misc/RealSvd2x2.h"
#include "src/Eigenvalues/Tridiagonalization.h"
#include "src/Eigenvalues/RealSchur.h"
#include "src/Eigenvalues/EigenSolver.h"
#include "src/Eigenvalues/SelfAdjointEigenSolver.h"
#include "src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h"
#include "src/Eigenvalues/HessenbergDecomposition.h"
#include "src/Eigenvalues/ComplexSchur.h"
#include "src/Eigenvalues/ComplexEigenSolver.h"
#include "src/Eigenvalues/RealQZ.h"
#include "src/Eigenvalues/GeneralizedEigenSolver.h"
#include "src/Eigenvalues/MatrixBaseEigenvalues.h"
#ifdef EIGEN_USE_LAPACKE
#include "src/misc/lapacke.h"
#include "src/Eigenvalues/RealSchur_LAPACKE.h"
#include "src/Eigenvalues/ComplexSchur_LAPACKE.h"
#include "src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h"
#endif
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_EIGENVALUES_MODULE_H
/* vim: set filetype=cpp et sw=2 ts=2 ai: */
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_GEOMETRY_MODULE_H
#define EIGEN_GEOMETRY_MODULE_H
#include "Core"
#include "src/Core/util/DisableStupidWarnings.h"
#include "SVD"
#include "LU"
#include <limits>
/** \defgroup Geometry_Module Geometry module
*
* This module provides support for:
* - fixed-size homogeneous transformations
* - translation, scaling, 2D and 3D rotations
* - \link Quaternion quaternions \endlink
* - cross products (\ref MatrixBase::cross, \ref MatrixBase::cross3)
* - orthognal vector generation (\ref MatrixBase::unitOrthogonal)
* - some linear components: \link ParametrizedLine parametrized-lines \endlink and \link Hyperplane hyperplanes \endlink
* - \link AlignedBox axis aligned bounding boxes \endlink
* - \link umeyama least-square transformation fitting \endlink
*
* \code
* #include <Eigen/Geometry>
* \endcode
*/
#include "src/Geometry/OrthoMethods.h"
#include "src/Geometry/EulerAngles.h"
#include "src/Geometry/Homogeneous.h"
#include "src/Geometry/RotationBase.h"
#include "src/Geometry/Rotation2D.h"
#include "src/Geometry/Quaternion.h"
#include "src/Geometry/AngleAxis.h"
#include "src/Geometry/Transform.h"
#include "src/Geometry/Translation.h"
#include "src/Geometry/Scaling.h"
#include "src/Geometry/Hyperplane.h"
#include "src/Geometry/ParametrizedLine.h"
#include "src/Geometry/AlignedBox.h"
#include "src/Geometry/Umeyama.h"
// Use the SSE optimized version whenever possible. At the moment the
// SSE version doesn't compile when AVX is enabled
#if defined EIGEN_VECTORIZE_SSE && !defined EIGEN_VECTORIZE_AVX
#include "src/Geometry/arch/Geometry_SSE.h"
#endif
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_GEOMETRY_MODULE_H
/* vim: set filetype=cpp et sw=2 ts=2 ai: */
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_HOUSEHOLDER_MODULE_H
#define EIGEN_HOUSEHOLDER_MODULE_H
#include "Core"
#include "src/Core/util/DisableStupidWarnings.h"
/** \defgroup Householder_Module Householder module
* This module provides Householder transformations.
*
* \code
* #include <Eigen/Householder>
* \endcode
*/
#include "src/Householder/Householder.h"
#include "src/Householder/HouseholderSequence.h"
#include "src/Householder/BlockHouseholder.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_HOUSEHOLDER_MODULE_H
/* vim: set filetype=cpp et sw=2 ts=2 ai: */
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_ITERATIVELINEARSOLVERS_MODULE_H
#define EIGEN_ITERATIVELINEARSOLVERS_MODULE_H
#include "SparseCore"
#include "OrderingMethods"
#include "src/Core/util/DisableStupidWarnings.h"
/**
* \defgroup IterativeLinearSolvers_Module IterativeLinearSolvers module
*
* This module currently provides iterative methods to solve problems of the form \c A \c x = \c b, where \c A is a squared matrix, usually very large and sparse.
* Those solvers are accessible via the following classes:
* - ConjugateGradient for selfadjoint (hermitian) matrices,
* - LeastSquaresConjugateGradient for rectangular least-square problems,
* - BiCGSTAB for general square matrices.
*
* These iterative solvers are associated with some preconditioners:
* - IdentityPreconditioner - not really useful
* - DiagonalPreconditioner - also called Jacobi preconditioner, work very well on diagonal dominant matrices.
* - IncompleteLUT - incomplete LU factorization with dual thresholding
*
* Such problems can also be solved using the direct sparse decomposition modules: SparseCholesky, CholmodSupport, UmfPackSupport, SuperLUSupport.
*
\code
#include <Eigen/IterativeLinearSolvers>
\endcode
*/
#include "src/IterativeLinearSolvers/SolveWithGuess.h"
#include "src/IterativeLinearSolvers/IterativeSolverBase.h"
#include "src/IterativeLinearSolvers/BasicPreconditioners.h"
#include "src/IterativeLinearSolvers/ConjugateGradient.h"
#include "src/IterativeLinearSolvers/LeastSquareConjugateGradient.h"
#include "src/IterativeLinearSolvers/BiCGSTAB.h"
#include "src/IterativeLinearSolvers/IncompleteLUT.h"
#include "src/IterativeLinearSolvers/IncompleteCholesky.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_ITERATIVELINEARSOLVERS_MODULE_H
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_JACOBI_MODULE_H
#define EIGEN_JACOBI_MODULE_H
#include "Core"
#include "src/Core/util/DisableStupidWarnings.h"
/** \defgroup Jacobi_Module Jacobi module
* This module provides Jacobi and Givens rotations.
*
* \code
* #include <Eigen/Jacobi>
* \endcode
*
* In addition to listed classes, it defines the two following MatrixBase methods to apply a Jacobi or Givens rotation:
* - MatrixBase::applyOnTheLeft()
* - MatrixBase::applyOnTheRight().
*/
#include "src/Jacobi/Jacobi.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_JACOBI_MODULE_H
/* vim: set filetype=cpp et sw=2 ts=2 ai: */
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_LU_MODULE_H
#define EIGEN_LU_MODULE_H
#include "Core"
#include "src/Core/util/DisableStupidWarnings.h"
/** \defgroup LU_Module LU module
* This module includes %LU decomposition and related notions such as matrix inversion and determinant.
* This module defines the following MatrixBase methods:
* - MatrixBase::inverse()
* - MatrixBase::determinant()
*
* \code
* #include <Eigen/LU>
* \endcode
*/
#include "src/misc/Kernel.h"
#include "src/misc/Image.h"
#include "src/LU/FullPivLU.h"
#include "src/LU/PartialPivLU.h"
#ifdef EIGEN_USE_LAPACKE
#include "src/misc/lapacke.h"
#include "src/LU/PartialPivLU_LAPACKE.h"
#endif
#include "src/LU/Determinant.h"
#include "src/LU/InverseImpl.h"
// Use the SSE optimized version whenever possible. At the moment the
// SSE version doesn't compile when AVX is enabled
#if defined EIGEN_VECTORIZE_SSE && !defined EIGEN_VECTORIZE_AVX
#include "src/LU/arch/Inverse_SSE.h"
#endif
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_LU_MODULE_H
/* vim: set filetype=cpp et sw=2 ts=2 ai: */
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_METISSUPPORT_MODULE_H
#define EIGEN_METISSUPPORT_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
extern "C" {
#include <metis.h>
}
/** \ingroup Support_modules
* \defgroup MetisSupport_Module MetisSupport module
*
* \code
* #include <Eigen/MetisSupport>
* \endcode
* This module defines an interface to the METIS reordering package (http://glaros.dtc.umn.edu/gkhome/views/metis).
* It can be used just as any other built-in method as explained in \link OrderingMethods_Module here. \endlink
*/
#include "src/MetisSupport/MetisSupport.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_METISSUPPORT_MODULE_H
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_ORDERINGMETHODS_MODULE_H
#define EIGEN_ORDERINGMETHODS_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
/**
* \defgroup OrderingMethods_Module OrderingMethods module
*
* This module is currently for internal use only
*
* It defines various built-in and external ordering methods for sparse matrices.
* They are typically used to reduce the number of elements during
* the sparse matrix decomposition (LLT, LU, QR).
* Precisely, in a preprocessing step, a permutation matrix P is computed using
* those ordering methods and applied to the columns of the matrix.
* Using for instance the sparse Cholesky decomposition, it is expected that
* the nonzeros elements in LLT(A*P) will be much smaller than that in LLT(A).
*
*
* Usage :
* \code
* #include <Eigen/OrderingMethods>
* \endcode
*
* A simple usage is as a template parameter in the sparse decomposition classes :
*
* \code
* SparseLU<MatrixType, COLAMDOrdering<int> > solver;
* \endcode
*
* \code
* SparseQR<MatrixType, COLAMDOrdering<int> > solver;
* \endcode
*
* It is possible as well to call directly a particular ordering method for your own purpose,
* \code
* AMDOrdering<int> ordering;
* PermutationMatrix<Dynamic, Dynamic, int> perm;
* SparseMatrix<double> A;
* //Fill the matrix ...
*
* ordering(A, perm); // Call AMD
* \endcode
*
* \note Some of these methods (like AMD or METIS), need the sparsity pattern
* of the input matrix to be symmetric. When the matrix is structurally unsymmetric,
* Eigen computes internally the pattern of \f$A^T*A\f$ before calling the method.
* If your matrix is already symmetric (at leat in structure), you can avoid that
* by calling the method with a SelfAdjointView type.
*
* \code
* // Call the ordering on the pattern of the lower triangular matrix A
* ordering(A.selfadjointView<Lower>(), perm);
* \endcode
*/
#ifndef EIGEN_MPL2_ONLY
#include "src/OrderingMethods/Amd.h"
#endif
#include "src/OrderingMethods/Ordering.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_ORDERINGMETHODS_MODULE_H
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_PASTIXSUPPORT_MODULE_H
#define EIGEN_PASTIXSUPPORT_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
extern "C" {
#include <pastix_nompi.h>
#include <pastix.h>
}
#ifdef complex
#undef complex
#endif
/** \ingroup Support_modules
* \defgroup PaStiXSupport_Module PaStiXSupport module
*
* This module provides an interface to the <a href="http://pastix.gforge.inria.fr/">PaSTiX</a> library.
* PaSTiX is a general \b supernodal, \b parallel and \b opensource sparse solver.
* It provides the two following main factorization classes:
* - class PastixLLT : a supernodal, parallel LLt Cholesky factorization.
* - class PastixLDLT: a supernodal, parallel LDLt Cholesky factorization.
* - class PastixLU : a supernodal, parallel LU factorization (optimized for a symmetric pattern).
*
* \code
* #include <Eigen/PaStiXSupport>
* \endcode
*
* In order to use this module, the PaSTiX headers must be accessible from the include paths, and your binary must be linked to the PaSTiX library and its dependencies.
* The dependencies depend on how PaSTiX has been compiled.
* For a cmake based project, you can use our FindPaSTiX.cmake module to help you in this task.
*
*/
#include "src/PaStiXSupport/PaStiXSupport.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_PASTIXSUPPORT_MODULE_H
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_PARDISOSUPPORT_MODULE_H
#define EIGEN_PARDISOSUPPORT_MODULE_H
#include "SparseCore"
#include "src/Core/util/DisableStupidWarnings.h"
#include <mkl_pardiso.h>
/** \ingroup Support_modules
* \defgroup PardisoSupport_Module PardisoSupport module
*
* This module brings support for the Intel(R) MKL PARDISO direct sparse solvers.
*
* \code
* #include <Eigen/PardisoSupport>
* \endcode
*
* In order to use this module, the MKL headers must be accessible from the include paths, and your binary must be linked to the MKL library and its dependencies.
* See this \ref TopicUsingIntelMKL "page" for more information on MKL-Eigen integration.
*
*/
#include "src/PardisoSupport/PardisoSupport.h"
#include "src/Core/util/ReenableStupidWarnings.h"
#endif // EIGEN_PARDISOSUPPORT_MODULE_H
// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
#ifndef EIGEN_QR_MODULE_H
#define EIGEN_QR_MODULE_H
#include "Core"
#include "src/Core/util/DisableStupidWarnings.h"
#include "Cholesky"
#include "Jacobi"
#include "Householder"
/** \defgroup QR_Module QR module
*
*
*
* This module provides various QR decompositions
* This module also provides some MatrixBase methods, including:
* - MatrixBase::householderQr()
* - MatrixBase::colPivHouseholderQr()
* - MatrixBase::fullPivHouseholderQr()
*
* \code
* #include <Eigen/QR>
* \endcode
*/
#include "src/QR/HouseholderQR.h"
#include "src/QR/FullPivHouseholderQR.h"