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List of Available Modules

List of Available Modules on Salomon Cluster

Categories

base

Module Description Available versions
EasyBuild
http://hpcugent.github.com/easybuild/
EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.
  • 2.1.1
  • 2.2.0
  • 2.3.0
Python
http://python.org/
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
  • 3.4.3-intel-2015b

bio

Module Description Available versions
Amber
http://ambermd.org
A set of molecular mechanical force fields for the simulation of biomolecules
  • 14
BCFtools
http://www.htslib.org/
Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
  • 1.3-foss-2015g
BWA
http://bio-bwa.sourceforge.net/
Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.
  • 0.7.5a-foss-2015g
FastQC
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.
  • 0.11.3
GATK
http://www.broadinstitute.org/gatk/
The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
  • 2.6-5-Java-1.7.0_79
  • 3.5-Java-1.7.0_79
GROMACS
http://www.gromacs.org
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
  • 4.6.7-foss-2015g-hybrid-single-PLUMED
  • 5.0.4-foss-2015e-hybrid-single-PLUMED
  • 5.0.4-foss-2015g-hybrid-single
  • 5.0.4-foss-2015g-hybrid-single-PLUMED
  • 5.0.4-ictce-7.3.5-hybrid-single
HTSlib
http://www.htslib.org/
A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
  • 1.3-foss-2015g
PLUMED
http://www.plumed-code.org
PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
  • 2.1.3-foss-2015g
RELION
http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM).
  • 1.3-intel-2015b
SAMtools
http://www.htslib.org/
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
  • 1.3-foss-2015g
SnpEff
http://snpeff.sourceforge.net/
Genetic variant annotation and effect prediction toolbox.
  • 4.1_G
Trimmomatic
http://www.usadellab.org/cms/?page=trimmomatic
Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.
  • 0.35-Java-1.7.0_79
almost
http://www-almost.ch.cam.ac.uk/site
all atom molecular simulation toolkit - is a fast and flexible molecular modeling environment that provides powerful and efficient algorithms for molecular simulation, homology modeling, de novo design and ab-initio calculations.
  • 2.1.0-foss-2015b
  • 2.1.0-foss-2015g
  • 2.1.0-intel-2015b
picard
http://sourceforge.net/projects/picard
A set of tools (in Java) for working with next generation sequencing data in the BAM format.
  • 1.119
  • 2.1.0

cae

Module Description Available versions
ANSYS
  • 16.1
  • 17.0
Adams
  • 2013.2
COMSOL
  • 51-COM
  • 51-EDU
Digimat
  • 5.0.1-COM
  • 5.0.1-EDU
FreeFem++
http://www.freefem.org
FreeFem++ is a partial differential equation solver. It has its own language. freefem scripts can solve multiphysics non linear systems in 2D and 3D. Problems involving PDE (2d, 3d) from several branches of physics such as fluid-structure interactions require interpolations of data on several meshes and their manipulation within one program. FreeFem++ includes a fast 2^d-tree-based interpolation algorithm and a language for the manipulation of data on multiple meshes (as a follow up of bamg (now a part of FreeFem++ ). FreeFem++ is written in C++ and the FreeFem++ language is a C++ idiom. It runs on Macs, Windows, Unix machines. FreeFem++ replaces the older freefem and freefem+.
  • 3.45-intel-2015b
HyperWorks
  • 13.0
Marc
  • 2013.1.0
OpenFOAM
http://www.openfoam.com/
OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
  • 2.2.2-intel-2015b
  • 2.3.0-intel-2015b
  • 3.0.0-intel-2016.01

chem

Module Description Available versions
ABINIT
http://www.abinit.org/
Abinit is a plane wave pseudopotential code for doing condensed phase electronic structure calculations using DFT.
  • 7.10.1-foss-2015b
  • 7.10.1-intel-2015b
CP2K
http://www.cp2k.org/
CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.
  • 2.6.0-intel-2015b
LAMMPS
http://lammps.sandia.gov
LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale.
  • 28Jun14-intel-2015b
Libint
https://sourceforge.net/p/libint/
Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.
  • 1.1.4-foss-2015b
  • 1.1.4-gompi-2015b
  • 1.1.4-intel-2015b
Molpro
  • 2010.1-patch-57-intel2015b
NAMD
http://www.ks.uiuc.edu/Research/namd/
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.
  • 2.9-mpi
NWChem
http://www.nwchem-sw.org
NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties and relativity.
  • 6.3.revision2-2013-10-17-Python-2.7.8
  • 6.5.revision26243-intel-2015b-2014-09-10-Python-2.7.8
S4MPLE
http://infochim.u-strasbg.fr/spip.php?rubrique152
S4MPLE (Sampler For Multiple Protein-Ligand Entities) is a flexible molecular modeling tool, supporting empirical force field-driven conformational sampling and geometry optimization heuristics using a hybrid genetic algorithm (GA).
  • 1.0.0
libctl
http://ab-initio.mit.edu/libctl
libctl is a free Guile-based library implementing flexible control files for scientific simulations.
  • 3.2.2-intel-2015b
libxc
http://www.tddft.org/programs/octopus/wiki/index.php/Libxc
Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
  • 2.2.0-foss-2015b
  • 2.2.0-gompi-2015b
  • 2.2.1-intel-2015b

compiler

Module Description Available versions
BerkeleyUPC
http://upc.lbl.gov
The goal of the Berkeley UPC compiler group is to develop a portable, high performance implementation of UPC for large-scale multiprocessors, PC clusters, and clusters of shared memory multiprocessors.
  • 2.16.2-gompi-2015b
Clang
http://clang.llvm.org/
C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.
  • 3.7.0-GNU-5.1.0-2.25
GCC
http://gcc.gnu.org/
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
  • 4.4.7-system
  • 4.7.4
  • 4.8.3
  • 4.9.2-binutils-2.25
  • 4.9.3
  • 4.9.3-2.25
  • 4.9.3-binutils-2.25
  • 5.1.0-binutils-2.25
  • 5.2.0
  • 5.3.0-2.25
  • 5.3.0-2.26
  • 5.3.0-binutils-2.25
  • 5.3.1-snapshot-20160419-2.25
GCCcore
http://gcc.gnu.org/
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
  • 4.9.3
  • 5.3.0
  • 5.3.1-snapshot-20160419
LLVM
http://llvm.org/
The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
  • 3.7.1-foss-2015g
OpenCoarrays
http://www.opencoarrays.org/
A transport layer for coarray Fortran compilers.
  • 1.4.0-GCC-5.3.0-2.25
  • 1.4.0-GCC-5.3.1-snapshot-20160419-2.25
PGI
  • 15.7
icc
http://software.intel.com/en-us/intel-compilers/
C and C++ compiler from Intel
  • 2013.5.192
  • 2013.5.192-GCC-4.8.3
  • 2015.3.187
  • 2015.3.187-GNU-4.9.3-2.25
  • 2015.3.187-GNU-5.1.0-2.25
  • 2016.0.109-GCC-4.9.3
  • 2016.1.150
  • 2016.1.150-GCC-4.9.3
  • 2016.1.150-GCC-4.9.3-2.25
  • 2016.3.210-GCC-5.3.0-2.26
ifort
http://software.intel.com/en-us/intel-compilers/
Fortran compiler from Intel
  • 2013.5.192
  • 2013.5.192-GCC-4.8.3
  • 2015.3.187
  • 2015.3.187-GNU-4.9.3-2.25
  • 2015.3.187-GNU-5.1.0-2.25
  • 2016.0.109-GCC-4.9.3
  • 2016.1.150
  • 2016.1.150-GCC-4.9.3
  • 2016.1.150-GCC-4.9.3-2.25
  • 2016.3.210-GCC-5.3.0-2.26

data

Module Description Available versions
GDAL
http://www.gdal.org/
GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
  • 1.9.2-foss-2015g
  • 2.0.1-foss-2015b
  • 2.1.0-GNU-5.1.0-2.25
  • 2.1.0-GNU-5.1.0-2.25-intel-2015b
  • 2.1.0-foss-2015g
  • 2.1.0-intel-2015b
HDF5
http://www.hdfgroup.org/HDF5/
HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
  • 1.10.0-patch1-intel-2016.01-mic
  • 1.8.13-foss-2015g
  • 1.8.13-intel-2015b
  • 1.8.13-intel-2015b-no-mpi
  • 1.8.13-intel-2016.01
  • 1.8.14-ictce-7.3.5-serial
  • 1.8.15-patch1-foss-2015b
  • 1.8.16-foss-2015g
  • 1.8.16-intel-2015b
  • 1.8.16-intel-2015b-threadsafe
h5py
http://www.h5py.org/
HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
  • 2.4.0-ictce-7.3.5-Python-2.7.9-serial
netCDF
http://www.unidata.ucar.edu/software/netcdf/
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
  • 4.3.2-foss-2015g
  • 4.3.2-intel-2015b
  • 4.3.2-intel-2016.01
  • 4.3.3.1-foss-2015b
netCDF-Fortran
http://www.unidata.ucar.edu/software/netcdf/
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
  • 4.4.0-intel-2016.01

debugger

Module Description Available versions
DDT
  • 4.2
  • 5.0.1
Forge
http://www.allinea.com/products/develop-allinea-forge
Allinea Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and FORTRAN applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.
  • 5.1-43967
  • 6.0.5
  • 6.0.6
PerformanceReports
http://www.allinea.com/products/allinea-performance-reports
Allinea Performance Reports are the most effective way to characterize and understand the performance of HPC application runs. One single-page HTML report elegantly answers a range of vital questions for any HPC site. - Is this application well-optimized for the system and the processors it is running on? - Does it benefit from running at this scale? - Are there I/O, networking or threading bottlenecks affecting performance? - Which hardware, software or configuration changes can we make to improve performance further. - How much energy did this application use?
  • 5.1-43967
  • 6.0.6
TotalView
  • 8.15.4-6-linux-x86-64
Valgrind
http://valgrind.org/downloads/
Valgrind: Debugging and profiling tools
  • 3.11.0-foss-2015b
  • 3.11.0-intel-2015b
aislinn
  • 20160105-Python-2.7.9-gompi-2015e

devel

Module Description Available versions
Autoconf
http://www.gnu.org/software/autoconf/
Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
  • 2.69
  • 2.69-GCC-4.9.3-2.25
  • 2.69-GNU-4.9.3-2.25
  • 2.69-GNU-5.1.0-2.25
  • 2.69-foss-2015g
  • 2.69-intel-2015b
  • 2.69-intel-2016.01
Automake
http://www.gnu.org/software/automake/automake.html
Automake: GNU Standards-compliant Makefile generator
  • 1.15
  • 1.15-GCC-4.9.3-2.25
  • 1.15-GNU-4.9.3-2.25
  • 1.15-GNU-5.1.0-2.25
  • 1.15-foss-2015g
  • 1.15-intel-2015b
  • 1.15-intel-2016.01
Autotools
http://autotools.io
This bundle collect the standard GNU build tools: Autoconf, Automake and libtool
  • 20150215
  • 20150215-GCC-4.9.3-2.25
  • 20150215-GNU-4.9.3-2.25
  • 20150215-GNU-5.1.0-2.25
  • 20150215-intel-2015b
  • 20150215-intel-2016.01
Boost
http://www.boost.org/
Boost provides free peer-reviewed portable C++ source libraries.
  • 1.58.0-Python-2.7.9
  • 1.58.0-foss-2015g-Python-2.7.9
  • 1.58.0-gompi-2015e-Python-2.7.9
  • 1.58.0-ictce-7.3.5-Python-2.7.9
  • 1.58.0-intel-2015b-Python-2.7.9
  • 1.58.0-intel-2016.01-Python-2.7.9
  • 1.59.0-intel-2015b-Python-2.7.11
  • 1.59.0-intel-2016.01
  • 1.60.0-foss-2015g-Python-2.7.9
CMake
http://www.cmake.org
CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
  • 3.0.0-foss-2015g
  • 3.0.0-ictce-7.3.5
  • 3.0.0-intel-2015b
  • 3.0.0-intel-2016.01
  • 3.3.1-GCC-5.3.0-2.25
  • 3.3.1-GCC-5.3.1-snapshot-20160419-2.25
  • 3.3.1-GNU-4.9.3-2.25
  • 3.3.1-GNU-5.1.0-2.25
  • 3.3.1-foss-2015g
  • 3.3.1-intel-2016.01
  • 3.3.2-GNU-4.9.3-2.25
  • 3.3.2-intel-2016.01
  • 3.4.1-GCCcore-4.9.3
  • 3.4.1-foss-2015b
  • 3.4.1-intel-2015b
  • 3.5.2
Doxygen
http://www.doxygen.org
Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
  • 1.8.10-foss-2015b
  • 1.8.11
  • 1.8.7-foss-2015g
  • 1.8.7-intel-2015b
  • 1.8.7-intel-2016.01
JUnit
http://sourceforge.net/projects/junit
A programmer-oriented testing framework for Java.
  • 4.11-Java-1.7.0_79
M4
http://www.gnu.org/software/m4/m4.html
GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
  • 1.4.16-foss-2015g
  • 1.4.16-intel-2015b
  • 1.4.17
  • 1.4.17-GCC-4.9.3-2.25
  • 1.4.17-GCC-4.9.3-binutils-2.25
  • 1.4.17-GCC-5.1.0-binutils-2.25
  • 1.4.17-GCCcore-4.9.3
  • 1.4.17-GCCcore-5.3.0
  • 1.4.17-GCCcore-5.3.1-snapshot-20160419
  • 1.4.17-GNU-4.9.3-2.25
  • 1.4.17-GNU-5.1.0-2.25
  • 1.4.17-foss-2015b
  • 1.4.17-foss-2015g
  • 1.4.17-intel-2015b
  • 1.4.17-intel-2016.01
Maven
http://maven.apache.org/index.html
Binary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.
  • 3.3.9
PCRE
http://www.pcre.org/
The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
  • 8.36-foss-2015g
  • 8.36-intel-2015b
  • 8.36-intel-2016.01
  • 8.37
  • 8.37-foss-2015g
Qt
http://qt-project.org/
Qt is a comprehensive cross-platform C++ application framework.
  • 4.8.6-foss-2015g
SCons
http://www.scons.org/
SCons is a software construction tool.
  • 2.3.6-Python-2.7.9
  • 2.3.6-foss-2015g-Python-2.7.9
SQLite
http://www.sqlite.org/
SQLite: SQL Database Engine in a C Library
  • 3.10.1-foss-2015g
  • 3.8.10.2-GCC-4.9.3-2.25
  • 3.8.10.2-GNU-4.9.3-2.25
  • 3.8.8.1
  • 3.8.8.1-GNU-5.1.0-2.25
  • 3.8.8.1-foss-2015b
  • 3.8.8.1-foss-2015g
  • 3.8.8.1-gompi-2015e
  • 3.8.8.1-ictce-7.3.5
  • 3.8.8.1-intel-2015b
  • 3.8.8.1-intel-2016.01
  • 3.9.2-foss-2015g
  • 3.9.2-intel-2015b
  • 3.9.2-intel-2016.01
SWIG
http://www.swig.org/
SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
  • 2.0.12-Python-2.7.9
  • 2.0.12-intel-2015b-Python-2.7.9
  • 3.0.7-Python-2.7.9
Spark
http://spark.apache.org
Spark is Hadoop MapReduce done in memory
  • 1.5.2
ant
http://ant.apache.org/
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.
  • 1.9.3-Java-1.7.0_79
fontsproto
http://www.freedesktop.org/wiki/Software/xlibs
X11 font extension wire protocol
  • 2.1.3-foss-2015g
glproto
http://www.freedesktop.org/wiki/Software/xlibs
X protocol and ancillary headers
  • 1.4.16-foss-2015g
gperf
http://www.gnu.org/software/gperf/
GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
  • 3.0.4-foss-2015g
guile
http://www.gnu.org/software/guile
Guile is the GNU Ubiquitous Intelligent Language for Extensions, the official extension language for the GNU operating system.
  • 1.8.8-foss-2015b
  • 1.8.8-foss-2015g
  • 1.8.8-intel-2015b
libSM
http://www.freedesktop.org/wiki/Software/xlibs
X11 Session Management library, which allows for applications to both manage sessions, and make use of session managers to save and restore their state for later use.
  • 1.2.2
  • 1.2.2-foss-2015g
  • 1.2.2-intel-2015b
make
http://www.gnu.org/software/make/make.html
make-3.82: GNU version of make utility
  • 3.82
  • 3.82-intel-2015b
makedepend
http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html
The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.
  • 1.0.4-foss-2015g
ncurses
http://www.gnu.org/software/ncurses/
The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
  • 5.9
  • 5.9-GCC-5.3.0-2.25
  • 5.9-GCC-5.3.1-snapshot-20160419-2.25
  • 5.9-GNU-4.9.3-2.25
  • 5.9-GNU-5.1.0-2.25
  • 5.9-foss-2015b
  • 5.9-foss-2015g
  • 5.9-gompi-2015e
  • 5.9-ictce-5.5.0
  • 5.9-ictce-7.3.5
  • 5.9-intel-2015b
  • 5.9-intel-2016.01
  • 6.0
  • 6.0-GCCcore-4.9.3
  • 6.0-foss-2015b
  • 6.0-foss-2015g
  • 6.0-intel-2016.01
pkg-config
http://www.freedesktop.org/wiki/Software/pkg-config/
pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).
  • 0.27.1
  • 0.27.1-foss-2015b
  • 0.27.1-foss-2015g
  • 0.27.1-intel-2015b
python-meep
https://code.launchpad.net/python-meep
Python wrapper for the Meep FDTD solver.
  • 1.4.2-intel-2015b-Python-2.7.9-Meep-1.3
renderproto
http://www.freedesktop.org/wiki/Software/xlibs
Xrender protocol and ancillary headers
  • 0.11-intel-2015b
xbitmaps
http://www.freedesktop.org/wiki/Software/xlibs
provides bitmaps for x
  • 1.1.1
  • 1.1.1-foss-2015g
  • 1.1.1-intel-2015b
xcb-proto
http://xcb.freedesktop.org/
The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.
  • 1.10-Python-2.7.8
  • 1.11-Python-2.7.9
  • 1.11-foss-2015g-Python-2.7.9
  • 1.11-intel-2015b-Python-2.7.9
xextproto
http://www.freedesktop.org/wiki/Software/xlibs
XExtProto protocol headers.
  • 7.3.0
  • 7.3.0-foss-2015g
  • 7.3.0-intel-2015b
xineramaproto
http://www.freedesktop.org/wiki/Software/xlibs
X protocol and ancillary headers for xinerama
  • 1.2.1-intel-2015b
xorg-macros
http://cgit.freedesktop.org/xorg/util/macros
X.org macros utilities.
  • 1.17-foss-2015g
xproto
http://www.freedesktop.org/wiki/Software/xlibs
X protocol and ancillary headers
  • 7.0.26
  • 7.0.26-foss-2015g
  • 7.0.26-intel-2015b
xtrans
http://www.freedesktop.org/wiki/Software/xlibs
xtrans includes a number of routines to make X implementations transport-independent; at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet.
  • 1.3.4-intel-2015b
  • 1.3.5
  • 1.3.5-foss-2015g
  • 1.3.5-intel-2015b

geo

Module Description Available versions
DCW
http://gmt.soest.hawaii.edu/projects/gmt
country polygons for GMT
  • 1.1.2
GMT
http://gmt.soest.hawaii.edu/
GMT is an open source collection of about 80 command-line tools for manipulating geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, etc.) and producing PostScript illustrations ranging from simple x-y plots via contour maps to artificially illuminated surfaces and 3D perspective views; the GMT supplements add another 40 more specialized and discipline-specific tools.
  • 5.2.1-foss-2015g
PROJ_4
http://proj.osgeo.org
PROJ.4 - Cartographic Projections Library originally written by Gerald Evenden then of the USGS.
  • 4.9.2-foss-2015g

lang

Module Description Available versions
Bison
http://www.gnu.org/software/bison
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
  • 2.5-intel-2015b
  • 2.7-GNU-5.1.0-2.25
  • 2.7-foss-2015b
  • 2.7-foss-2015g
  • 2.7-intel-2015b
  • 3.0.2
  • 3.0.2-foss-2015g
  • 3.0.2-intel-2015b
  • 3.0.2-intel-2016.01
  • 3.0.4
  • 3.0.4-GCC-4.9.3-binutils-2.25
  • 3.0.4-GCC-5.1.0-binutils-2.25
  • 3.0.4-GCCcore-4.9.3
  • 3.0.4-GCCcore-5.3.0
  • 3.0.4-GCCcore-5.3.1-snapshot-20160419
  • 3.0.4-foss-2015b
  • 3.0.4-intel-2016.01
Java
http://java.com/
Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
  • 1.7.0_79
  • 1.8.0_51
  • 1.8.0_72
Mono
http://www.mono-project.com
Mono is an open source implementation of Microsoft's .NET Framework based on the ECMA standards for C# and the Common Language Runtime.
  • 3.12.1
  • 3.12.1-GCC-4.4.7-system
  • 4.0.3.20-GNU-5.1.0-2.25
  • 4.2.2.10-intel-2016.01
NASM
http://www.nasm.us/
NASM: General-purpose x86 assembler
  • 2.11.05
  • 2.11.05-foss-2015b
  • 2.11.05-foss-2015g
  • 2.11.05-intel-2015b
  • 2.11.06-intel-2015b
  • 2.11.08-foss-2015b
OpenCL-builder
https://software.intel.com/en-us/intel-opencl
OpenCL™ is the first open, royalty-free standard for cross-platform, parallel programming of modern processors found in personal computers, servers and handheld/embedded devices. OpenCL (Open Computing Language) greatly improves speed and responsiveness for a wide spectrum of applications in numerous market categories from gaming and entertainment to scientific and medical software. This is builder (formerly runtime) package.
  • 2015
OpenCL-runtime
https://software.intel.com/en-us/intel-opencl
OpenCL™ is the first open, royalty-free standard for cross-platform, parallel programming of modern processors found in personal computers, servers and handheld/embedded devices. OpenCL (Open Computing Language) greatly improves speed and responsiveness for a wide spectrum of applications in numerous market categories from gaming and entertainment to scientific and medical software.
  • 15.1
Perl
http://www.perl.org/
Larry Wall's Practical Extraction and Report Language
  • 5.16.3-intel-2015b
  • 5.20.2-GNU-4.9.3-2.25-bare
  • 5.20.2-bare
Python
http://python.org/
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
  • 2.7.10-GCC-4.9.3-2.25-bare
  • 2.7.10-GNU-4.9.3-2.25-bare
  • 2.7.11-intel-2015b
  • 2.7.8-intel-2015b
  • 2.7.8-intel-2016.01
  • 2.7.9
  • 2.7.9-GNU-5.1.0-2.25
  • 2.7.9-foss-2015b
  • 2.7.9-foss-2015g
  • 2.7.9-gompi-2015e
  • 2.7.9-ictce-7.3.5
  • 2.7.9-intel-2015b
  • 2.7.9-intel-2016.01
  • 3.5.1-intel-2016.01
R
http://www.r-project.org/
R is a free software environment for statistical computing and graphics.
  • 3.1.1-intel-2015b
  • 3.2.3-foss-2015b
  • 3.2.3-intel-2016.01
Racket
http://racket-lang.org
Racket is a full-spectrum programming language. It goes beyond Lisp and Scheme with dialects that support objects, types, laziness, and more.
  • 6.1.1-GNU-5.1.0-2.25
Ruby
https://www.ruby-lang.org
Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.
  • 2.1.5-intel-2015b
SIP
http://www.riverbankcomputing.com/software/sip/
SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.
  • 4.16.4-foss-2015g-Python-2.7.9
  • 4.17-foss-2015g-Python-2.7.9
SnuCL
http://snucl.snu.ac.kr
An OpenCL Framework for Heterogeneous Clusters
  • 1.3.3-gompi-2015e
Tcl
http://www.tcl.tk/
Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
  • 8.5.12-intel-2015b
  • 8.6.3
  • 8.6.3-GNU-5.1.0-2.25
  • 8.6.3-foss-2015b
  • 8.6.3-foss-2015g
  • 8.6.3-gompi-2015e
  • 8.6.3-ictce-7.3.5
  • 8.6.3-intel-2015b
  • 8.6.3-intel-2016.01
  • 8.6.4
  • 8.6.4-GCC-4.9.3-2.25
  • 8.6.4-GNU-4.9.3-2.25
  • 8.6.4-foss-2015b
  • 8.6.4-foss-2015g
  • 8.6.4-intel-2015b
  • 8.6.4-intel-2016.01
byacc
http://invisible-island.net/byacc/byacc.html
Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available. In contrast to bison, it is written to avoid dependencies upon a particular compiler.
  • 20120526-foss-2015b
  • 20120526-foss-2015g
  • 20120526-intel-2015b
flex
http://flex.sourceforge.net/
Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
  • 2.5.35-intel-2015b
  • 2.5.37-intel-2015b
  • 2.5.38-GCC-4.8.3
  • 2.5.39
  • 2.5.39-GCC-4.9.3-binutils-2.25
  • 2.5.39-GCC-5.1.0-binutils-2.25
  • 2.5.39-GCCcore-4.9.3
  • 2.5.39-GCCcore-5.3.0
  • 2.5.39-GCCcore-5.3.1-snapshot-20160419
  • 2.5.39-foss-2015b
  • 2.5.39-foss-2015g
  • 2.5.39-intel-2015b
  • 2.5.39-intel-2016.01
  • 2.6.0
  • 2.6.0-GCCcore-5.3.0
libgdiplus
https://github.com/mono/libgdiplus
An Open Source implementation of the GDI+ API.
  • 3.12-GCC-4.4.7-system
  • 3.12-GNU-5.1.0-2.25
  • 3.12-intel-2016.01

lib

Module Description Available versions
FOX
http://fox-toolkit.org
FOX is a C++ based Toolkit for developing Graphical User Interfaces easily and effectively. It offers a wide, and growing, collection of Controls, and provides state of the art facilities such as drag and drop, selection, as well as OpenGL widgets for 3D graphical manipulation.
  • 1.6.51-foss-2015g
LibTIFF
http://www.remotesensing.org/libtiff/
tiff: Library and tools for reading and writing TIFF data files
  • 4.0.3-intel-2015b
OpenCoarrays
http://www.opencoarrays.org
OpenCoarrays is an open-source software project for developing, porting and tuning transport layers that support coarray Fortran compilers.
  • 1.0.0-GNU-5.1.0-2.25
  • 1.0.1-GNU-5.1.0-2.25
PROJ
http://trac.osgeo.org/proj/
Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
  • 4.8.0-foss-2015b
QCA
http://delta.affinix.com/qca/
QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers
  • 2.1.0-foss-2015g
QGIS
http://www.qgis.org
A Free and Open Source Geographic Information System
  • 2.12.3-foss-2015g
Qwt
http://qwt.sourceforge.net/index.html
The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background. Beside a framework for 2D plots it provides scales, sliders, dials, compasses, thermometers, wheels and knobs to control or display values, arrays, or ranges of type double.
  • 6.1.2-foss-2015g
SpatiaLite
https://www.gaia-gis.it/fossil/libspatialite/index
SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities.
  • 4.3.0a-foss-2015g
libMesh
http://libmesh.github.io/
The libMesh library provides a framework for the numerical simulation of partial differential equations using arbitrary unstructured discretizations on serial and parallel platforms. A major goal of the library is to provide support for adaptive mesh refinement (AMR) computations in parallel while allowing a research scientist to focus on the physics they are modeling.
  • 0.9.5-intel-2016.01
libdrm
http://dri.freedesktop.org
Direct Rendering Manager runtime library.
  • 2.4.27-foss-2015g
libffi
http://sourceware.org/libffi/
The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
  • 3.0.13-foss-2015b
  • 3.0.13-foss-2015g
  • 3.0.13-intel-2015b
  • 3.1-GNU-5.1.0-2.25
  • 3.1-foss-2015b
  • 3.1-intel-2015b
  • 3.1-intel-2016.01
libfontenc
http://www.freedesktop.org/wiki/Software/xlibs/
X11 font encoding library
  • 1.1.3-foss-2015g
libjpeg-turbo
http://sourceforge.net/libjpeg-turbo/
libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
  • 1.3.1-foss-2015b
  • 1.3.1-intel-2015b
  • 1.4.0
  • 1.4.0-foss-2015g
  • 1.4.0-intel-2015b
  • 1.4.1-foss-2015b
libmatheval
http://www.gnu.org/software/libmatheval/
GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.
  • 1.1.8-foss-2015b
  • 1.1.8-foss-2015g
  • 1.1.8-intel-2015b
libpng
http://www.libpng.org/pub/png/libpng.html
libpng is the official PNG reference library
  • 1.6.12
  • 1.6.12-foss-2015b
  • 1.6.12-foss-2015g
  • 1.6.12-intel-2015b
  • 1.6.12-intel-2016.01
  • 1.6.17-foss-2015b
  • 1.6.21-foss-2015b
  • 1.6.21-foss-2015g
  • 1.6.9-ictce-5.5.0
  • 1.6.9-intel-2015b
libpthread-stubs
http://xcb.freedesktop.org/
The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.
  • 0.3
  • 0.3-foss-2015g
  • 0.3-intel-2015b
libreadline
http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html
The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
  • 6.2-ictce-5.5.0
  • 6.2-intel-2015b
  • 6.3
  • 6.3-GCCcore-4.9.3
  • 6.3-GNU-4.9.3-2.25
  • 6.3-GNU-5.1.0-2.25
  • 6.3-foss-2015b
  • 6.3-foss-2015g
  • 6.3-gompi-2015e
  • 6.3-ictce-7.3.5
  • 6.3-intel-2015b
  • 6.3-intel-2016.01
libtool
http://www.gnu.org/software/libtool
GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
  • 2.4.2-foss-2015b
  • 2.4.2-foss-2015g
  • 2.4.2-intel-2015b
  • 2.4.6
  • 2.4.6-GCC-4.9.3-2.25
  • 2.4.6-GNU-4.9.3-2.25
  • 2.4.6-GNU-5.1.0-2.25
  • 2.4.6-foss-2015g
  • 2.4.6-intel-2015b
  • 2.4.6-intel-2016.01
libunistring
http://www.gnu.org/software/libunistring/
This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
  • 0.9.3-foss-2015b
  • 0.9.3-foss-2015g
  • 0.9.3-intel-2015b
libxcb
http://xcb.freedesktop.org/
The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.
  • 1.10-Python-2.7.8
  • 1.11-Python-2.7.9
  • 1.11-foss-2015g-Python-2.7.9
  • 1.11-intel-2015b-Python-2.7.9
libxml2
http://xmlsoft.org/
Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
  • 2.9.2-GCC-4.9.3-2.25
  • 2.9.2-GNU-4.9.3-2.25
  • 2.9.2-GNU-5.1.0-2.25
  • 2.9.2-foss-2015b
  • 2.9.2-foss-2015g
  • 2.9.2-foss-2015g-Python-2.7.9
  • 2.9.2-gompi-2015e
  • 2.9.2-ictce-7.3.5
  • 2.9.2-intel-2015b
spatialindex
https://libspatialindex.github.io/index.html
The purpose of this library is to provide: * An extensible framework that will support robust spatial indexing methods. * Support for sophisticated spatial queries. Range, point location, nearest neighbor and k-nearest neighbor as well as parametric queries (defined by spatial constraints) should be easy to deploy and run. * Easy to use interfaces for inserting, deleting and updating information.
  • 1.8.5-foss-2015g
tbb
http://software.intel.com/en-us/articles/intel-tbb/
Intel Threading Building Blocks 4.0 (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based parallel applications that scale to available processor cores, are compatible with multiple environments, and are easier to maintain. Intel TBB is the most proficient way to implement future-proof parallel applications that tap into the power and performance of multicore and manycore hardware platforms.
  • 4.3.5.187
  • 4.4.2.152
zlib
http://www.zlib.net/
zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
  • 1.2.7-foss-2015b
  • 1.2.7-ictce-5.5.0
  • 1.2.7-intel-2015b
  • 1.2.8
  • 1.2.8-GCC-4.9.3-2.25
  • 1.2.8-GCC-4.9.3-binutils-2.25
  • 1.2.8-GCC-5.1.0-binutils-2.25
  • 1.2.8-GCCcore-4.9.3
  • 1.2.8-GCCcore-5.3.0
  • 1.2.8-GCCcore-5.3.1-snapshot-20160419
  • 1.2.8-GNU-4.9.3-2.25
  • 1.2.8-GNU-5.1.0-2.25
  • 1.2.8-GNU-5.1.0-2.25-intel-2015b
  • 1.2.8-foss-2015b
  • 1.2.8-foss-2015g
  • 1.2.8-gompi-2015e
  • 1.2.8-ictce-7.3.5
  • 1.2.8-intel-2015b
  • 1.2.8-intel-2016.01

math

Module Description Available versions
FIAT
https://bitbucket.org/fenics-project/fiat
The FInite element Automatic Tabulator FIAT supports generation of arbitrary order instances of the Lagrange elements on lines, triangles, and tetrahedra. It is also capable of generating arbitrary order instances of Jacobi-type quadrature rules on the same element shapes.
  • 1.6.0-intel-2015b-Python-2.7.11
  • 1.6.0-intel-2015b-Python-2.7.9
  • 1.6.0-intel-2016.01-Python-2.7.9
GEOS
http://trac.osgeo.org/geos
GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
  • 3.5.0-foss-2015g
GMP
http://gmplib.org/
GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
  • 5.0.5-foss-2015b
  • 5.0.5-foss-2015g
  • 5.0.5-intel-2015b
  • 6.0.0a-GNU-4.9.3-2.25
  • 6.0.0a-GNU-5.1.0-2.25
  • 6.0.0a-foss-2015b
  • 6.1.0-GCC-4.9.3-2.25
  • 6.1.0-intel-2015b
  • 6.1.0-intel-2016.01
Harminv
http://ab-initio.mit.edu/wiki/index.php/Harminv
Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.
  • 1.4-intel-2015b
ISL
http://isl.gforge.inria.fr/
isl is a library for manipulating sets and relations of integer points bounded by linear constraints.
  • 0.14-GNU-5.1.0-2.25
  • 0.15-GCC-4.9.3-2.25
  • 0.15-GNU-4.9.3-2.25
METIS
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
  • 5.1.0-intel-2015b
  • 5.1.0-intel-2016.01
  • 5.1.0-intel-2016.01-32bitIDX
Octave
http://www.gnu.org/software/octave/
GNU Octave is a high-level interpreted language, primarily intended for numerical computations.
  • 3.8.2-foss-2015g
  • 3.8.2-intel-2015b
  • 4.0.0-foss-2015g
ParMETIS
http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview
ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
  • 4.0.3-intel-2015b
  • 4.0.3-intel-2016.01
SCOTCH
http://gforge.inria.fr/projects/scotch/
Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
  • 5.1.12b_esmumps-foss-2015b
  • 6.0.0_esmumps-intel-2015b
  • 6.0.3-intel-2015b
  • 6.0.3-intel-2016.01
  • 6.0.4-intel-2015b
  • 6.0.4-intel-2016.01
ScientificPython
https://sourcesup.cru.fr/projects/scientific-py/
ScientificPython is a collection of Python modules for scientific computing. It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, and parallelization.
  • 2.9.4-intel-2015b-Python-2.7.11
  • 2.9.4-intel-2015b-Python-2.7.9
  • 2.9.4-intel-2016.01-Python-2.7.9
numpy
http://www.numpy.org
NumPy is the fundamental package for scientific computing with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.
  • 1.8.2-intel-2015b-Python-2.7.11
  • 1.8.2-intel-2015b-Python-2.7.9
  • 1.8.2-intel-2016.01-Python-2.7.9
  • 1.9.1-intel-2015b-Python-2.7.9
sympy
http://sympy.org/
SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.
  • 0.7.6-intel-2015b-Python-2.7.9
  • 0.7.6-intel-2016.01-Python-2.7.9
  • 0.7.6.1-intel-2015b-Python-2.7.11

mpi

Module Description Available versions
MPICH
http://www.mpich.org/
MPICH v3.x is an open source high-performance MPI 3.0 implementation. It does not support InfiniBand (use MVAPICH2 with InfiniBand devices).
  • 3.2-GCC-5.3.0-2.25
  • 3.2-GCC-5.3.1-snapshot-20160419-2.25
MPI_NET
http://www.osl.iu.edu/research/mpi.net/
MPI.NET is a high-performance, easy-to-use implementation of the Message Passing Interface (MPI) for Microsoft's .NET environment
  • 1.2.0-gompi-2015e
  • 1.2.0-intel-2016.01
MVAPICH2
http://mvapich.cse.ohio-state.edu/overview/mvapich2/
This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH.
  • 2.1-GCC-4.4.7-system
  • 2.1-GNU-5.1.0-2.25
  • 2.1-iccifort-2015.3.187-GNU-5.1.0-2.25
OpenMPI
http://www.open-mpi.org/
The Open MPI Project is an open source MPI-2 implementation.
  • 1.10.1-GNU-4.9.3-2.25
  • 1.10.2-GCC-5.3.0-2.26
  • 1.8.6-GCC-4.4.7-system
  • 1.8.6-GNU-5.1.0-2.25
  • 1.8.6-iccifort-2015.3.187-GNU-5.1.0-2.25
  • 1.8.8-GNU-4.9.3-2.25
  • 1.8.8-GNU-5.1.0-2.25
  • 1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25
impi
http://software.intel.com/en-us/intel-mpi-library/
The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.
  • 2017-BETA.ENG
  • 4.1.1.036-iccifort-2013.5.192
  • 4.1.1.036-iccifort-2013.5.192-GCC-4.8.3
  • 5.0.3.048
  • 5.0.3.048-iccifort-2015.3.187
  • 5.0.3.048-iccifort-2015.3.187-GNU-5.1.0-2.25
  • 5.1.1.109-iccifort-2016.0.109-GCC-4.9.3
  • 5.1.2.150-iccifort-2016.1.150
  • 5.1.2.150-iccifort-2016.1.150-GCC-4.9.3
  • 5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25
  • 5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26
mpt
  • 2.12

numlib

Module Description Available versions
FFTW
http://www.fftw.org
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
  • 2.1.5-gompi-2015b
  • 2.1.5-iimpi-7.3.5-GNU-5.1.0-2.25
  • 3.3.4-gompi-2015b
  • 3.3.4-gompi-2015e
  • 3.3.4-gompi-2015g
  • 3.3.4-gompi-2016.04
  • 3.3.4-intel-2015b
  • 3.3.4-intel-2016.01
GSL
http://www.gnu.org/software/gsl/
The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
  • 1.16-intel-2015b
Hypre
https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html
Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
  • 2.10.0b-intel-2015b
  • 2.10.0b-intel-2016.01
  • 2.10.1-intel-2015b
LAPACKE
http://www.netlib.org/lapack/lapacke.html
LAPACKE C Interface to LAPACK header files and library
  • 3.5.0-LAPACK-3.5.0
OpenBLAS
http://xianyi.github.com/OpenBLAS/
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
  • 0.2.14-GNU-4.9.3-2.25-LAPACK-3.5.0
  • 0.2.14-GNU-5.1.0-2.25-LAPACK-3.5.0
  • 0.2.14-LAPACK-3.5.0
  • 0.2.14-gompi-2015e-LAPACK-3.5.0
  • 0.2.18-GCC-5.3.0-2.26-LAPACK-3.6.0
PETSc
http://www.mcs.anl.gov/petsc
PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
  • 3.6.1-intel-2015b-Python-2.7.9
  • 3.6.1-intel-2016.01-Python-2.7.9
  • 3.6.3-intel-2015b-Python-2.7.11
ScaLAPACK
http://www.netlib.org/scalapack/
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
  • 2.0.2-OpenBLAS-0.2.14-LAPACK-3.5.0
  • 2.0.2-gompi-2015b-OpenBLAS-0.2.14-LAPACK-3.5.0
  • 2.0.2-gompi-2015e-OpenBLAS-0.2.14-LAPACK-3.5.0
  • 2.0.2-gompi-2015g-OpenBLAS-0.2.14-LAPACK-3.5.0
  • 2.0.2-gompi-2016.04-OpenBLAS-0.2.18-LAPACK-3.6.0
SuiteSparse
http://www.cise.ufl.edu/research/sparse/SuiteSparse/
SuiteSparse is a collection of libraries manipulate sparse matrices.
  • 4.4.3-intel-2015b-ParMETIS-4.0.3
  • 4.4.3-intel-2016.01-ParMETIS-4.0.3
  • 4.4.6-intel-2015b-ParMETIS-4.0.3
arpack-ng
http://forge.scilab.org/index.php/p/arpack-ng/
ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
  • 3.3.0-intel-2015b
imkl
http://software.intel.com/en-us/intel-mkl/
Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
  • 11.0.5.192-iimpi-5.5.0
  • 11.0.5.192-iimpi-5.5.0-GCC-4.8.3
  • 11.2.3.187
  • 11.2.3.187-iimpi-7.3.5
  • 11.2.3.187-iimpi-7.3.5-GNU-5.1.0-2.25
  • 11.2.3.187-iompi-2015.03
  • 11.3.0.109-iimpi-2016.00-GCC-4.9.3
  • 11.3.1.150-iimpi-2016.00-GCC-4.9.3
  • 11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25
  • 11.3.1.150-iimpi-8.3.5
  • 11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26

perf

Module Description Available versions
Advisor
https://software.intel.com/intel-advisor-xe
Vectorization Optimization and Thread Prototyping - Vectorize & thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype & Predict performance gain
  • 2016_update2
MAP
  • 4.2
  • 5.0.1
OPARI2
http://www.score-p.org
OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
  • 1.1.4-intel-2015b
OTF2
http://www.score-p.org
The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It will become the new standard trace format for Scalasca, Vampir, and Tau and is open for other tools.
  • 1.4-intel-2015b
PAPI
http://icl.cs.utk.edu/projects/papi/
PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.
  • 5.4.0-intel-2015b
PerfReports
  • 5.0.1
Vampir
http://www.vampir.eu
The Vampir software tool provides an easy-to-use framework that enables developers to quickly display and analyze arbitrary program behavior at any level of detail. The tool suite implements optimized event analysis algorithms and customizable displays that enable fast and interactive rendering of very complex performance monitoring data.
  • 8.5.0
ipp
http://software.intel.com/en-us/articles/intel-ipp/
Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms.
  • 9.0.1.150
perfboost
  • 1.0
perfcatcher
  • 1.0
perfsuite
  • 1a5.3

phys

Module Description Available versions
Meep
http://ab-initio.mit.edu/wiki/index.php/Meep
Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.
  • 1.3-intel-2015b
phono3py
http://phonopy.sourceforge.net/phono3py/index.html
This software calculates phonon-phonon interaction related properties
  • 0.9.14-ictce-7.3.5-Python-2.7.9

system

Module Description Available versions
hwloc
http://www.open-mpi.org/projects/hwloc/
The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
  • 1.11.0-GNU-4.9.3-2.25
  • 1.11.0-GNU-5.1.0-2.25
  • 1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25
  • 1.11.2-GCC-4.9.3-2.25
  • 1.11.3-GCC-5.3.0-2.26
  • 1.5-GCC-4.4.7-system
libpciaccess
http://cgit.freedesktop.org/xorg/lib/libpciaccess/
Generic PCI access library.
  • 0.13.1-foss-2015g

toolchain

Module Description Available versions
GNU
http://www.gnu.org/software/
Compiler-only toolchain with GCC and binutils.
  • 4.9.3-2.25
  • 5.1.0-2.25
  • 5.1.0-2.25-intel-2015b
PRACE
http://www.prace-ri.eu/PRACE-Common-Production
The PRACE Common Production Environment (PCPE) is a set of software tools and libraries that are planned to be available on all PRACE execution sites. The PCPE also defines a set of environment variables that try to make compilation on all sites as homogeneous and simple as possible.
  • 20150630-intel-2015b
foss
(none)
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  • 2015b
  • 2015e
  • 2015g
  • 2016.04
gompi
(none)
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
  • 2015b
  • 2015e
  • 2015g
  • 2016.04
iccifort
http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
Intel C, C++ and Fortran compilers
  • 2013.5.192
  • 2013.5.192-GCC-4.8.3
  • 2015.3.187
  • 2015.3.187-GNU-4.9.3-2.25
  • 2015.3.187-GNU-5.1.0-2.25
  • 2016.0.109-GCC-4.9.3
  • 2016.1.150
  • 2016.1.150-GCC-4.9.3
  • 2016.1.150-GCC-4.9.3-2.25
  • 2016.3.210-GCC-5.3.0-2.26
ictce
http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.
  • 5.5.0
  • 7.3.5
  • 8.3.5
iimpi
http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
Intel C/C++ and Fortran compilers, alongside Intel MPI.
  • 2016.00-GCC-4.9.3
  • 2016.01-GCC-4.9.3
  • 2016.01-GCC-4.9.3-2.25
  • 2016.03-GCC-5.3.0-2.26
  • 5.5.0
  • 5.5.0-GCC-4.8.3
  • 7.3.5
  • 7.3.5-GNU-5.1.0-2.25
  • 8.3.5
intel
http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.
  • 2014.06
  • 2015b
  • 2015b-intel-2015b
  • 2016.00
  • 2016.01
  • 2016.03-GCC-5.3
prace
http://www.prace-ri.eu/PRACE-Common-Production
**** PRACE Common Production Environment (PCPE) **** Initialisation of the PRACE common production environment. This allows you to assume that the following tools/libraries are available by default in your PATH/environment. * Fortran, C, C++ Compilers * MPI * BLAS, LAPACK, BLACS, ScaLAPACK * FFTW * HDF5, NetCDF The compiler commands on are: * mpif90 - Fortran compiler * mpicc - C compiler * mpicxx - C++ compiler For more information on the PCPE please see the documentation at: http://www.prace-ri.eu/PRACE-Common-Production For help using this system, please see Local User Guide available at: http://prace-ri.eu/Best-Practice-Guide-Anselm-HTML
  • 20160107-intel-2016.01

tools

Module Description Available versions
APR
http://apr.apache.org/
Apache Portable Runtime (APR) libraries.
  • 1.5.2-foss-2015g
APR-util
http://apr.apache.org/
Apache Portable Runtime (APR) util libraries.
  • 1.5.4-foss-2015g
Bash
http://www.gnu.org/software/bash
Bash is an sh-compatible command language interpreter that executes commands read from the standard input or from a file. Bash also incorporates useful features from the Korn and C shells (ksh and csh).
  • 4.2-intel-2015b
EasyBuild
http://hpcugent.github.com/easybuild/
EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.
  • 2.4.0
  • 2.5.0
  • 2.7.0
  • 2.8.0
HPL
http://www.netlib.org/benchmark/hpl/
HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.
  • 2.1-foss-2015b
  • 2.1-intel-2015b
Inspector
http://software.intel.com/en-us/intel-inspector-xe
Intel Inspector XE 2013 is an easy to use memory error checker and thread checker for serial and parallel applications
  • 2016_update1
JOE
http://joe-editor.sourceforge.net
JOE is a full featured terminal-based screen editor which is distributed under the GNU General Public License (GPL)
  • 4.2
MATLAB
  • 2015a-COM
  • 2015a-EDU
  • 2015b-COM
  • 2015b-EDU
MIKE
http://www.mikepoweredbydhi.com
MIKE Powered by DHI is a part of DHI, the global organisation dedicated to solving challenges in water environments worldwide.
  • 2014
  • 2016
  • 2016-SP2
Mercurial
http://mercurial.selenic.com/
Mercurial is a free, distributed source control management tool. It efficiently handles projects of any size and offers an easy and intuitive interface.
  • 3.5-Python-2.7.9
  • 3.7.3-foss-2015g-Python-2.7.9
QEMU
http://wiki.qemu.org/Main_Page
QEMU is a generic and open source machine emulator and virtualizer.
  • 2.1.2-GCC-4.4.7-system
  • 2.1.2-GCC-4.4.7-system-VDE2
SDE
https://software.intel.com/en-us/articles/intel-software-development-emulator
Intel Software Development Emulator is a pintool that enables the development of applications using instruction set extensions that are not currently implemented in hardware.
  • 7.41.0
Serf
http://serf.apache.org/
The serf library is a high performance C-based HTTP client library built upon the Apache Portable Runtime (APR) library
  • 1.3.8-foss-2015g
Subversion
http://subversion.apache.org/
Subversion is an open source version control system.
  • 1.8.16-foss-2015g
Szip
http://www.hdfgroup.org/doc_resource/SZIP/
Szip compression software, providing lossless compression of scientific data
  • 2.1
  • 2.1-foss-2015b
  • 2.1-foss-2015g
  • 2.1-ictce-7.3.5
  • 2.1-intel-2015b
  • 2.1-intel-2016.01
VDE2
http://vde.sourceforge.net
VDE is an ethernet compliant virtual network that can be spawned over a set of physical computer over the Internet. VDE is part of virtualsquare project.
  • 2.3.2-GCC-4.4.7-system
VTune
http://software.intel.com/en-us/intel-vtune-amplifier-xe
Intel VTune Amplifier XE 2016 is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.
  • 2016_update1
VirtualGL
http://www.virtualgl.org
VirtualGL is an open source toolkit that gives any Unix or Linux remote display software the ability to run OpenGL applications with full 3D hardware acceleration.
  • 2.4.1
Wine
https://www.winehq.org
Wine (originally an acronym for "Wine Is Not an Emulator") is a compatibility layer capable of running Windows applications on several POSIX-compliant operating systems, such as Linux, Mac OSX, & BSD.
  • 1.7.29-GCC-4.4.7-system
  • 1.7.29-GNU-5.1.0-2.25
XZ
http://tukaani.org/xz/
xz: XZ utilities
  • 5.2.2-intel-2016.01
binutils
http://directory.fsf.org/project/binutils/
binutils: GNU binary utilities
  • 2.25
  • 2.25-GCC-4.9.3-binutils-2.25
  • 2.25-GCC-5.1.0-binutils-2.25
  • 2.25-GCCcore-4.9.3
  • 2.25-GCCcore-5.3.0
  • 2.25-GCCcore-5.3.1-snapshot-20160419
  • 2.25-foss-2015b
  • 2.26
  • 2.26-GCCcore-5.3.0
bzip2
http://www.bzip.org/
bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
  • 1.0.6
  • 1.0.6-GCC-4.9.3-2.25
  • 1.0.6-GNU-4.9.3-2.25
  • 1.0.6-GNU-5.1.0-2.25
  • 1.0.6-foss-2015b
  • 1.0.6-foss-2015g
  • 1.0.6-gompi-2015e
  • 1.0.6-ictce-7.3.5
  • 1.0.6-intel-2015b
  • 1.0.6-intel-2016.01
cURL
http://curl.haxx.se
libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
  • 7.37.1
  • 7.37.1-foss-2015g
  • 7.37.1-intel-2015b
  • 7.37.1-intel-2016.01
  • 7.45.0-foss-2015b
expat
http://expat.sourceforge.net/
Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags)
  • 2.1.0
  • 2.1.0-foss-2015b
  • 2.1.0-foss-2015g
  • 2.1.0-intel-2015b
git
http://git-scm.com/
Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
  • 2.8.0
  • 2.8.0-GNU-4.9.3-2.25
gzip
http://www.gnu.org/software/gzip/
gzip (GNU zip) is a popular data compression program as a replacement for compress
  • 1.6-foss-2015g
  • 1.6-intel-2015b
itac
http://software.intel.com/en-us/intel-trace-analyzer/
The Intel Trace Collector is a low-overhead tracing library that performs event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application activities gathered by the Intel Trace Collector through graphical displays.
  • 9.1.2.024
numactl
http://oss.sgi.com/projects/libnuma/
The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
  • 2.0.10-GNU-4.9.3-2.25
  • 2.0.10-GNU-5.1.0-2.25
  • 2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25
  • 2.0.11
  • 2.0.11-GCC-4.9.3-2.25
  • 2.0.11-GCC-5.3.0-2.26
  • 2.0.9-GCC-4.4.7-system
parallel
http://savannah.gnu.org/projects/parallel/
parallel: Build and execute shell commands in parallel
  • 20150322-GNU-5.1.0-2.25
tcsh
http://www.tcsh.org
Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.
  • 6.18.01-intel-2015b
  • 6.19.00
turbovnc
http://www.turbovnc.org
TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.
  • 1.2.3
util-linux
http://www.kernel.org/pub/linux/utils/util-linux
Set of Linux utilities
  • 2.26.1
  • 2.26.1-foss-2015g

vis

Module Description Available versions
FLTK
http://www.fltk.org
FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
  • 1.3.2-intel-2015b
GLib
http://www.gtk.org/
GLib is one of the base libraries of the GTK+ project
  • 2.40.0-foss-2015g
  • 2.40.0-intel-2015b
  • 2.40.0-intel-2016.01
GPI-2
http://www.gpi-site.com/gpi2/
GPI-2 is an API for the development of scalable, asynchronous and fault tolerant parallel applications.
  • 1.1.1-gompi-2015e
  • 1.1.1-gompi-2015e-MPI
JasPer
http://www.ece.uvic.ca/~frodo/jasper/
The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
  • 1.900.1-intel-2015b
Mesa
http://www.mesa3d.org/
Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
  • 11.0.8-foss-2015g-Python-2.7.9
OSPRay
http://www.ospray.org
A Ray Tracing Based Rendering Engine for High-Fidelity Visualization
  • 0.9.1
OpenCV
http://opencv.org/
OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products.
  • 2.4.9-intel-2015b
  • 3.0.0-intel-2015b
OpenDX
http://www.opendx.org
Open source visualization software package based on IBM's Visualization Data Explorer.
  • 4.4.4-foss-2015g
ParaView
http://www.paraview.org
ParaView is a scientific parallel visualizer.
  • 4.3-OSPRay
  • 5.0.0-binary
PyQt
http://www.riverbankcomputing.co.uk/software/pyqt
PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.
  • 4.11.3-foss-2015g-Python-2.7.9
  • 4.11.4-foss-2015g-Python-2.7.9
SUMO
http://www.sumo.dlr.de/wiki/Main_Page
Simulation of Urban MObility (SUMO) is an open source, highly portable, microscopic and continuous road traffic simulation package designed to handle large road networks.
  • 0.25.0-foss-2015g
  • 0.26.0-foss-2015g
Tk
http://www.tcl.tk/
Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
  • 8.5.12-intel-2015b
  • 8.6.4-GCC-4.9.3-2.25-no-X11
  • 8.6.4-GNU-4.9.3-2.25-no-X11
  • 8.6.4-foss-2015b-no-X11
  • 8.6.4-foss-2015g-no-X11
  • 8.6.4-intel-2015b-no-X11
  • 8.6.4-intel-2016.01-no-X11
  • 8.6.4-no-X11
VisIt
https://wci.llnl.gov/simulation/computer-codes/visit
VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool
  • 2.10.0
cairo
http://cairographics.org
Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
  • 1.12.18-foss-2015b
ffmpeg
https://www.ffmpeg.org/
A complete, cross-platform solution to record, convert and stream audio and video.
  • 2.4-foss-2015g
  • 2.4-intel-2015b
fixesproto
http://www.freedesktop.org/wiki/Software/xlibs
X.org FixesProto protocol headers.
  • 5.0-foss-2015g
fontconfig
http://www.freedesktop.org/software/fontconfig
Fontconfig is a library designed to provide system-wide font configuration, customization and application access.
  • 2.11.1-foss-2015b
  • 2.11.1-intel-2015b
freetype
http://freetype.org
FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
  • 2.5.3
  • 2.5.3-foss-2015b
  • 2.5.3-foss-2015g
  • 2.5.3-intel-2015b
gettext
http://www.gnu.org/software/gettext/
GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
  • 0.19.2
  • 0.19.2-GNU-5.1.0-2.25
  • 0.19.2-foss-2015b
  • 0.19.2-foss-2015g
  • 0.19.2-intel-2015b
  • 0.19.2-intel-2016.01
  • 0.19.6-foss-2015g
  • 0.19.6-intel-2016.01
grace
http://freecode.com/projects/grace
Grace is a WYSIWYG 2D plotting tool for X Windows System and Motif.
  • 5.1.25-intel-2015b
inputproto
http://www.freedesktop.org/wiki/Software/xlibs
X.org InputProto protocol headers.
  • 2.3
  • 2.3-foss-2015g
  • 2.3-intel-2015b
kbproto
http://www.freedesktop.org/wiki/Software/xlibs
X.org KBProto protocol headers.
  • 1.0.6
  • 1.0.6-foss-2015g
  • 1.0.6-intel-2015b
libGLU
ftp://ftp.freedesktop.org/pub/mesa/glu/
The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
  • 9.0.0-foss-2015g
libICE
http://www.freedesktop.org/wiki/Software/xlibs
X Inter-Client Exchange library for freedesktop.org
  • 1.0.9
  • 1.0.9-foss-2015g
  • 1.0.9-intel-2015b
libX11
http://www.freedesktop.org/wiki/Software/xlibs
X11 client-side library
  • 1.6.2-Python-2.7.8
  • 1.6.2-Python-2.7.9
  • 1.6.2-foss-2015g-Python-2.7.9
  • 1.6.2-intel-2015b-Python-2.7.9
libXau
http://www.freedesktop.org/wiki/Software/xlibs
The libXau package contains a library implementing the X11 Authorization Protocol. This is useful for restricting client access to the display.
  • 1.0.8
  • 1.0.8-foss-2015g
  • 1.0.8-intel-2015b
libXdamage
http://www.freedesktop.org/wiki/Software/xlibs
X Damage extension library
  • 1.1.4-foss-2015g-Python-2.7.9
libXdmcp
http://www.freedesktop.org/wiki/Software/xlibs
The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is useful for allowing clients to interact with the X Display Manager.
  • 1.1.2
  • 1.1.2-foss-2015g
  • 1.1.2-intel-2015b
libXext
http://www.freedesktop.org/wiki/Software/xlibs
Common X Extensions library
  • 1.3.2-Python-2.7.8
  • 1.3.3
  • 1.3.3-foss-2015g
  • 1.3.3-foss-2015g-Python-2.7.9
  • 1.3.3-intel-2015b
libXfixes
http://www.freedesktop.org/wiki/Software/xlibs
X Fixes extension library
  • 5.0.1-foss-2015g
libXfont
http://www.freedesktop.org/wiki/Software/xlibs
X font libary
  • 1.5.1-foss-2015g-Python-2.7.9
libXft
http://www.freedesktop.org/wiki/Software/xlibs
X11 client-side library
  • 2.3.2-intel-2015b
libXinerama
http://www.freedesktop.org/wiki/Software/xlibs
Xinerama multiple monitor library
  • 1.1.3-intel-2015b
libXrender
http://www.freedesktop.org/wiki/Software/xlibs
X11 client-side library
  • 0.9.8-intel-2015b
libXt
http://www.freedesktop.org/wiki/Software/xlibs
libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).
  • 1.1.4-foss-2015g-libX11-1.6.2
  • 1.1.4-intel-2015b-libX11-1.6.2
  • 1.1.4-libX11-1.6.2
  • 1.1.5-foss-2015g
motif
http://motif.ics.com/
Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix.
  • 2.3.4-foss-2015g-libX11-1.6.2
  • 2.3.4-intel-2015b-libX11-1.6.2
p4vasp
http://www.p4vasp.at
p4vasp is a visualization suite for the Vienna Ab-initio Simulation Package (VASP). It contains an extensible GUI framework, that can be used to view material structure, density of states, band-structure and more.
  • 0.3.29-GNU-4.9.3-2.25
pixman
http://www.pixman.org/
Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
  • 0.32.6-foss-2015b
  • 0.32.6-intel-2015b