diff --git a/mkdocs.yml b/mkdocs.yml index 3a8de784aabc74b9c13c08bf9dfeb270b6e18ccf..1822ba11d9ba407c3ff751e80bd4dfc0b1206c78 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -37,8 +37,8 @@ pages: - Job Submission and Execution: anselm-cluster-documentation/job-submission-and-execution.md - Capacity computing: anselm-cluster-documentation/capacity-computing.md - Storage: anselm-cluster-documentation/storage.md - - Anselm Cluster Software: anselm-cluster-documentation/software/index.md - - ' Anselm Cluster Software': +# - Anselm Cluster Software: anselm-cluster-documentation/software/index.md + - 'Anselm Cluster Software': - Modules: modules-anselm.md - COMSOL: anselm-cluster-documentation/software/comsol-multiphysics.md - ParaView: anselm-cluster-documentation/software/paraview.md @@ -51,59 +51,59 @@ pages: - Virtualization: anselm-cluster-documentation/software/kvirtualization.md - Java: anselm-cluster-documentation/software/java.md - Operating System: anselm-cluster-documentation/software/operating-system.md - - ' Anselm Cluster Intel Suite': - - Introduction: anselm-cluster-documentation/software/intel-suite/introduction.md - - Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md - - Intel Compilers: anselm-cluster-documentation/software/intel-suite/intel-compilers.md - - Intel IPP: anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md - - Intel TBB: anselm-cluster-documentation/software/intel-suite/intel-tbb.md - - Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md - - ' Anselm Cluster MPI': - - Introduction: anselm-cluster-documentation/software/mpi/mpi.md - - MPI4Py (MPI for Python): anselm-cluster-documentation/software/mpi/mpi4py-mpi-for-python.md - - Running OpenMPI: anselm-cluster-documentation/software/mpi/Running_OpenMPI.md - - Running MPICH2: anselm-cluster-documentation/software/mpi/running-mpich2.md - - ' Anselm Cluster Numerical Libraries': - - Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md - - PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md - - Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md - - FFTW: anselm-cluster-documentation/software/numerical-libraries/fftw.md - - GSL: anselm-cluster-documentation/software/numerical-libraries/gsl.md - - MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md - - HDF5: anselm-cluster-documentation/software/numerical-libraries/hdf5.md - - ' Anselm Cluster Omics Master': - - Diagnostic component (TEAM): anselm-cluster-documentation/software/omics-master/diagnostic-component-team.md - - Priorization component (BiERApp): anselm-cluster-documentation/software/omics-master/priorization-component-bierapp.md - - Overview: anselm-cluster-documentation/software/omics-master/overview.md - - ' Anselm Cluster Debuggers': - - Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md - - PAPI: anselm-cluster-documentation/software/debuggers/papi.md - - Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md - - Total View: anselm-cluster-documentation/software/debuggers/total-view.md - - CUBE: anselm-cluster-documentation/software/debuggers/cube.md - - Intel VTune Amplifier: anselm-cluster-documentation/software/debuggers/intel-vtune-amplifier.md - - VNC: anselm-cluster-documentation/software/debuggers/debuggers.md - - Scalasca: anselm-cluster-documentation/software/debuggers/scalasca.md - - Score-P: anselm-cluster-documentation/software/debuggers/score-p.md - - Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md - - Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md - - Vampir: anselm-cluster-documentation/software/debuggers/vampir.md - - ' Anselm Cluster Numerical Languages': - - Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md - - R: anselm-cluster-documentation/software/numerical-languages/r.md - - Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab_1314.md - - Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md - - Octave: anselm-cluster-documentation/software/numerical-languages/octave.md - - ' Anselm Cluster Chemistry': - - Molpro: anselm-cluster-documentation/software/chemistry/molpro.md - - NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md - - ' Anselm Cluster Ansys': - - Introduction: anselm-cluster-documentation/software/ansys/ansys.md - - ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md - - ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md - - ANSYS MAPDL: anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md - - LS-DYNA: anselm-cluster-documentation/software/ansys/ls-dyna.md - - ANSYS Fluent: anselm-cluster-documentation/software/ansys/ansys-fluent.md + - 'Intel Suite': + - Introduction: anselm-cluster-documentation/software/intel-suite/introduction.md + - Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md + - Intel Compilers: anselm-cluster-documentation/software/intel-suite/intel-compilers.md + - Intel IPP: anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md + - Intel TBB: anselm-cluster-documentation/software/intel-suite/intel-tbb.md + - Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md + - 'MPI': + - Introduction: anselm-cluster-documentation/software/mpi/mpi.md + - MPI4Py (MPI for Python): anselm-cluster-documentation/software/mpi/mpi4py-mpi-for-python.md + - Running OpenMPI: anselm-cluster-documentation/software/mpi/Running_OpenMPI.md + - Running MPICH2: anselm-cluster-documentation/software/mpi/running-mpich2.md + - 'Numerical Libraries': + - Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md + - PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md + - Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md + - FFTW: anselm-cluster-documentation/software/numerical-libraries/fftw.md + - GSL: anselm-cluster-documentation/software/numerical-libraries/gsl.md + - MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md + - HDF5: anselm-cluster-documentation/software/numerical-libraries/hdf5.md + - 'Omics Master': + - Diagnostic component (TEAM): anselm-cluster-documentation/software/omics-master/diagnostic-component-team.md + - Priorization component (BiERApp): anselm-cluster-documentation/software/omics-master/priorization-component-bierapp.md + - Overview: anselm-cluster-documentation/software/omics-master/overview.md + - 'Debuggers': + - Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md + - PAPI: anselm-cluster-documentation/software/debuggers/papi.md + - Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md + - Total View: anselm-cluster-documentation/software/debuggers/total-view.md + - CUBE: anselm-cluster-documentation/software/debuggers/cube.md + - Intel VTune Amplifier: anselm-cluster-documentation/software/debuggers/intel-vtune-amplifier.md + - VNC: anselm-cluster-documentation/software/debuggers/debuggers.md + - Scalasca: anselm-cluster-documentation/software/debuggers/scalasca.md + - Score-P: anselm-cluster-documentation/software/debuggers/score-p.md + - Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md + - Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md + - Vampir: anselm-cluster-documentation/software/debuggers/vampir.md + - 'Numerical Languages': + - Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md + - R: anselm-cluster-documentation/software/numerical-languages/r.md + - Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab_1314.md + - Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md + - Octave: anselm-cluster-documentation/software/numerical-languages/octave.md + - 'Chemistry': + - Molpro: anselm-cluster-documentation/software/chemistry/molpro.md + - NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md + - 'Ansys': + - Introduction: anselm-cluster-documentation/software/ansys/ansys.md + - ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md + - ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md + - ANSYS MAPDL: anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md + - LS-DYNA: anselm-cluster-documentation/software/ansys/ls-dyna.md + - ANSYS Fluent: anselm-cluster-documentation/software/ansys/ansys-fluent.md - Salomon Cluster Documentation: - Introduction: salomon/introduction.md - PRACE User Support: salomon/prace.md @@ -122,58 +122,57 @@ pages: - Job submission and execution: salomon/job-submission-and-execution.md - Capacity computing: salomon/capacity-computing.md - Storage: salomon/storage.md - - Salomon Cluster Software: salomon/software/index.md - - ' Salomon Cluster Software': + - 'Salomon Cluster Software': - Modules: modules-salomon.md - UV Modules: modules-salomon-uv.md - Compilers: salomon/software/compilers.md - Intel Xeon Phi: salomon/software/intel-xeon-phi.md - Java: salomon/software/java.md - Operating System: salomon/software/operating-system.md - - ' Salomon Cluster Intel Suite': - - Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md - - Intel MKL: salomon/software/intel-suite/intel-mkl.md - - Intel Compilers: salomon/software/intel-suite/intel-compilers.md - - Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md - - Intel TBB: salomon/software/intel-suite/intel-tbb.md - - Intel Debugger: salomon/software/intel-suite/intel-debugger.md - - Intel Inspector: salomon/software/intel-suite/intel-inspector.md - - Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md - - Intel Advisor: salomon/software/intel-suite/intel-advisor.md - - ' Salomon Cluster MPI': - - Introduction: salomon/software/mpi/mpi.md - - MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md - - Running OpenMPI: salomon/software/mpi/Running_OpenMPI.md - - ' Salomon Cluster Debuggers': - - Introduction: salomon/software/debuggers/Introduction.md - - Valgrind: salomon/software/debuggers/valgrind.md - - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md - - Total View: salomon/software/debuggers/total-view.md - - Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md - - Aislinn: salomon/software/debuggers/aislinn.md - - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md - - Vampir: salomon/software/debuggers/vampir.md - - ' Salomon Cluster Numerical Languages': - - Introduction: salomon/software/numerical-languages/introduction.md - - R: salomon/software/numerical-languages/r.md - - Matlab: salomon/software/numerical-languages/matlab.md - - Octave: salomon/software/numerical-languages/octave.md - - ' Salomon Cluster Chemistry': - - Molpro: salomon/software/chemistry/molpro.md - - Phono3py: salomon/software/chemistry/phono3py.md - - NWChem: salomon/software/chemistry/nwchem.md - - ' Salomon Cluster Comsol': - - COMSOL: salomon/software/comsol/comsol-multiphysics.md - - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md - - ' Salomon Cluster Ansys': - - Introduction: salomon/software/ansys/ansys.md - - Workbench: salomon/software/ansys/workbench.md - - ANSYS CFX: salomon/software/ansys/ansys-cfx.md - - ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md - - ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md - - ANSYS Fluent: salomon/software/ansys/ansys-fluent.md - - Setting license preferences: salomon/software/ansys/licensing.md - - Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md + - 'Intel Suite': + - Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md + - Intel MKL: salomon/software/intel-suite/intel-mkl.md + - Intel Compilers: salomon/software/intel-suite/intel-compilers.md + - Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md + - Intel TBB: salomon/software/intel-suite/intel-tbb.md + - Intel Debugger: salomon/software/intel-suite/intel-debugger.md + - Intel Inspector: salomon/software/intel-suite/intel-inspector.md + - Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md + - Intel Advisor: salomon/software/intel-suite/intel-advisor.md + - 'MPI': + - Introduction: salomon/software/mpi/mpi.md + - MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md + - Running OpenMPI: salomon/software/mpi/Running_OpenMPI.md + - 'Debuggers': + - Introduction: salomon/software/debuggers/Introduction.md + - Valgrind: salomon/software/debuggers/valgrind.md + - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md + - Total View: salomon/software/debuggers/total-view.md + - Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md + - Aislinn: salomon/software/debuggers/aislinn.md + - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md + - Vampir: salomon/software/debuggers/vampir.md + - 'Numerical Languages': + - Introduction: salomon/software/numerical-languages/introduction.md + - R: salomon/software/numerical-languages/r.md + - Matlab: salomon/software/numerical-languages/matlab.md + - Octave: salomon/software/numerical-languages/octave.md + - 'Chemistry': + - Molpro: salomon/software/chemistry/molpro.md + - Phono3py: salomon/software/chemistry/phono3py.md + - NWChem: salomon/software/chemistry/nwchem.md + - 'Comsol': + - COMSOL: salomon/software/comsol/comsol-multiphysics.md + - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md + - 'Ansys': + - Introduction: salomon/software/ansys/ansys.md + - Workbench: salomon/software/ansys/workbench.md + - ANSYS CFX: salomon/software/ansys/ansys-cfx.md + - ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md + - ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md + - ANSYS Fluent: salomon/software/ansys/ansys-fluent.md + - Setting license preferences: salomon/software/ansys/licensing.md + - Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md - PBSPro Documentation: pbspro-documentation/pbspro.md extra: