diff --git a/scripts/preklopeni_dokumentace/html_md.sh b/scripts/preklopeni_dokumentace/html_md.sh
index e4ab5df058f9ea62dc2e0a1fe79879ce9faab97e..fb91d57c93ad0372cedb762dbe48d11e2ceb212c 100755
--- a/scripts/preklopeni_dokumentace/html_md.sh
+++ b/scripts/preklopeni_dokumentace/html_md.sh
@@ -5,73 +5,12 @@
# version: 1.00
###
-if [ "$1" = "-d" ]; then
- # remove pdf, md and epub files
- STARTTIME=$(date +%s)
- if [ "$2" = "pdf" ]; then
- echo "$(tput setaf 9)*.pdf deleted$(tput setaf 15)"
- if [ -d ./pdf ]; then
- rm -rf ./pdf
- fi
- elif [ "$2" = "epub" ]; then
- echo "$(tput setaf 9)*.epub deleted$(tput setaf 15)"
- if [ -d ./epub ]; then
- rm -rf ./epub
- fi
- elif [ "$2" = "md" ]; then
- echo "$(tput setaf 9)*.md deleted$(tput setaf 15)"
- if [ -d ./converted ]; then
- rm -rf ./converted
- fi
- elif [ "$2" = "all" ]; then
- echo "$(tput setaf 9)all files deleted$(tput setaf 15)"
- if [ -d ./docs.it4i ]; then
- rm -rf ./converted
- fi
- if [ -d ./epub ]; then
- rm -rf ./epub
- fi
- if [ -d ./pdf ]; then
- rm -rf ./pdf
- fi
- if [ -d ./info ]; then
- rm -rf ./info
- fi
- if [ -d ./docs.it4i.cz ]; then
- rm -rf ./docs.it4i.cz
- fi
- fi
- ENDTIME=$(date +%s)
- echo "It takes $(($ENDTIME - $STARTTIME)) seconds to complete this task..."
-fi
if [ "$1" = "-w" ]; then
# download html pages
- STARTTIME=$(date +%s)
rm -rf docs-old.it4i.cz
- wget -X pbspro-documentation,changelog,whats-new,portal_css,portal_javascripts,++resource++jquery-ui-themes,anselm-cluster-documentation/icon.jpg -R favicon.ico,pdf.png,logo.png,background.png,application.png,search_icon.png,png.png,sh.png,touch_icon.png,anselm-cluster-documentation/icon.jpg,*js,robots.txt,*xml,RSS,download_icon.png,pdf,*zip,*rar,@@*,anselm-cluster-documentation/icon.jpg.1 --mirror --convert-links --adjust-extension --page-requisites --no-parent https://docs-old.it4i.cz;
-
- # download images
- wget --directory-prefix=./docs-old.it4i.cz/ http://verif.cs.vsb.cz/aislinn/doc/report.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/virtualization/virtualization-job-workflow
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig1.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig2.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig3.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig4.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig5.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig6.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig7.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig7x.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig8.png
- wget --directory-prefix=./docs-old.it4i.cz/ https://docs-old.it4i.cz/anselm-cluster-documentation/software/omics-master-1/images/fig9.png
- ENDTIME=$(date +%s)
- echo "It takes $(($ENDTIME - $STARTTIME)) seconds to complete this task..."
-
+ wget -X portal_css,portal_javascripts,++resource++jquery-ui-themes,anselm-cluster-documentation/icon.jpg -R favicon.ico,pdf.png,logo.png,background.png,application.png,search_icon.png,png.png,sh.png,touch_icon.png,anselm-cluster-documentation/icon.jpg,*js,robots.txt,*xml,RSS,download_icon.png,@@*,anselm-cluster-documentation/icon.jpg.1 --mirror --convert-links --adjust-extension --page-requisites --no-parent https://docs-old.it4i.cz;
fi
if [ "$1" = "-c" ]; then
- ### convert html to md
- STARTTIME=$(date +%s)
- if [ -d ./docs.it4i.cz ]; then
-
# erasing the previous transfer
if [ -d ./docs.it4i ]; then
rm -rf ./docs.it4i
@@ -80,16 +19,6 @@ if [ "$1" = "-c" ]; then
rm -rf ./info;
fi
- # erasing duplicate files and unwanted files
- (while read i;
- do
- if [ -f "$i" ];
- then
- echo "$(tput setaf 9)$i deleted";
- rm "$i";
- fi
- done) < ./source/list_rm
-
# counter for html and md files
counter=1
count=$(find . -name "*.html" -type f | wc -l)
@@ -113,44 +42,7 @@ if [ "$1" = "-c" ]; then
printf "\t\t.html => $(tput setaf 13).md\n$(tput setaf 15)"
pandoc -f html -t markdown+pipe_tables-grid_tables "${i%.*}TMP.html" -o "${i%.*}.md";
- rm "${i%.*}TMP.html";
-
- # filtering html and css elements...
- printf "\t\tFiltering html and css elements in md files...\n"
- sed -e 's/``` /```/' "${i%.*}.md" | sed -e 's/<\/div>//g' | sed '/^<div/d' | sed -e 's/<\/span>//' | sed -e 's/^\*\*//' | sed -e 's/\\//g' | sed -e 's/^: //g' | sed -e 's/^Obsah//g' > "${i%.*}TMP.md";
- while read x ; do
- arg1=`echo "$x" | cut -d"&" -f1 | sed 's:[]\[\^\$\.\*\/\"]:\\\\&:g'`;
- arg2=`echo "$x" | cut -d"&" -f2 | sed 's:[]\[\^\$\.\*\/\"]:\\\\&:g'`;
-
- sed -e 's/'"$arg1"'/'"$arg2"'/' "${i%.*}TMP.md" > "${i%.*}TMP.TEST.md";
- cat -s "${i%.*}TMP.TEST.md" > "${i%.*}TMP.md";
- done < ./source/replace
-
- # repair formatting...
- printf "\t\tFix formatting text...\n"
- while read x ; do
- arg1=`echo "$x" | cut -d"&" -f1 | sed 's:[]\[\^\$\.\*\/\"]:\\\\&:g'`;
- arg2=`echo "$x" | cut -d"&" -f2 | sed 's:[]\[\^\$\.\*\/\"]:\\\\&:g'`;
-
- sed -e 's/'"$arg1"'/'"$arg2"'/' "${i%.*}TMP.md" | sed -e 's/^``//g' > "${i%.*}TMP.TEST.md";
- cat -s "${i%.*}TMP.TEST.md" > "${i%.*}TMP.md";
- done < ./source/formatting
-
- # last repair formatting...
- printf "\t\tLatest fix formatting text...\n"
- while read x ; do
- arg1=`echo "$x" | cut -d"&" -f1 | sed 's:[]\[\^\$\.\*\/\"]:\\\\&:g'`;
- arg2=`echo "$x" | cut -d"&" -f2 | sed 's:[]\[\^\$\.\*\/\"]:\\\\&:g'`;
-
- sed -e 's/'"$arg1"'/'"$arg2"'/' "${i%.*}TMP.md" > "${i%.*}TMP.TEST.md";
- cat -s "${i%.*}TMP.TEST.md" > "${i%.*}TMP.md";
- done < ./source/lastFilter
-
- cat "${i%.*}TMP.md" > "${i%.*}.md";
-
- # delete temporary files
- rm "${i%.*}TMP.md";
- rm "${i%.*}TMP.TEST.md";
+ rm "${i%.*}TMP.html"
done
# delete empty files
@@ -160,64 +52,4 @@ if [ "$1" = "-c" ]; then
rm "$i";
echo "$(tput setaf 9)$i deleted";
done
-
- ### create new folder and move converted files
- # create folder info and list all files and folders
- mkdir info;
- echo "$(tput setaf 11)Create folder info and lists od files...";
- find ./docs.it4i.cz -name "*.png" -type f > ./info/list_image;
- find ./docs.it4i.cz -name "*.jpg" -type f >> ./info/list_image;
- find ./docs.it4i.cz -name "*.jpeg" -type f >> ./info/list_image;
- find ./docs.it4i.cz -name "*.md" -type f> ./info/list_md;
- find ./docs.it4i.cz -type d | sort > ./info/list_folder;
-
- count=$(find ./docs.it4i.cz -name "*.md" -type f | wc -l)
-
- echo "$count"
-
- if [ $count -eq 150 ]; then
- mkdir docs.it4i;
- (while read i;
- do
- mkdir "./docs.it4i/$i";
- done) < ./source/list_folder
-
- # move md files to folder converted
- echo "$(tput setaf 11)Moved md files...";
- while read a b ; do
- mv "$a" "./docs.it4i/$b";
- done < <(paste ./info/list_md ./source/list_md_mv)
-
- # copy jpg, jpeg and png to folder converted
- echo "$(tput setaf 11)Copy image files...";
- while read a b ; do
- cp "$a" "./docs.it4i/$b";
- done < <(paste ./info/list_image ./source/list_image_mv)
- cp ./docs.it4i.cz/salomon/salomon ./docs.it4i/salomon/salomon
- cp ./docs.it4i.cz/salomon/salomon-2 ./docs.it4i/salomon/salomon-2
- cp ./docs.it4i/salomon/resource-allocation-and-job-execution/fairshare_formula.png ./docs.it4i/anselm-cluster-documentation/resource-allocation-and-job-execution/fairshare_formula.png
- cp ./docs.it4i/salomon/resource-allocation-and-job-execution/job_sort_formula.png ./docs.it4i/anselm-cluster-documentation/resource-allocation-and-job-execution/job_sort_formula.png
- cp ./docs.it4i/salomon/software/debuggers/vtune-amplifier.png ./docs.it4i/anselm-cluster-documentation/software/debuggers/vtune-amplifier.png
- cp ./docs.it4i/salomon/software/debuggers/Snmekobrazovky20160708v12.33.35.png ./docs.it4i/anselm-cluster-documentation/software/debuggers/Snmekobrazovky20160708v12.33.35.png
- cp ./docs.it4i.cz/virtualization-job-workflow ./docs.it4i/anselm-cluster-documentation/software/
- cp ./docs.it4i.cz/anselm-cluster-documentation/anyconnecticon.jpg ./docs.it4i/salomon/accessing-the-cluster/anyconnecticon.jpg
- cp ./docs.it4i.cz/anselm-cluster-documentation/anyconnectcontextmenu.jpg ./docs.it4i/salomon/accessing-the-cluster/anyconnectcontextmenu.jpg
- cp ./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/TightVNC_login.png ./docs.it4i/salomon/software/debuggers/TightVNC_login.png
-
- # list all files and folder converted
- find ./docs.it4i -name "*.png" -type f > ./info/list_image_converted;
- find ./docs.it4i -name "*.jpg" -type f >> ./info/list_image_converted;
- find ./docs.it4i -name "*.jpeg" -type f >> ./info/list_image_converted;
- find ./docs.it4i -name "*.md" -type f> ./info/list_md_converted;
- find ./docs.it4i -type d | sort > ./info/list_folder_converted;
-
- echo "$(tput setaf 13)COMPLETED...$(tput setaf 15)";
- else
- printf "\n\n$(tput setaf 9)Can not create a folder docs.it4i, because the number of MD files disagrees. The converted files remain in the folder docs.it4i.cz !!!!...$(tput setaf 15)\n\n";
- fi
- else
- printf "\n\n$(tput setaf 9)Folder docs.it4i.cz not exists!!!!...$(tput setaf 15)\n\nRun html_md.sh -w\n\n";
- fi
- ENDTIME=$(date +%s)
- echo "It takes $(($ENDTIME - $STARTTIME)) seconds to complete this task..."
fi
diff --git a/scripts/preklopeni_dokumentace/source/formatting b/scripts/preklopeni_dokumentace/source/formatting
deleted file mode 100644
index 5ef039f1873c98e6f1e406b544bad0de5887ce03..0000000000000000000000000000000000000000
--- a/scripts/preklopeni_dokumentace/source/formatting
+++ /dev/null
@@ -1,54 +0,0 @@
- []()&
- **[]()&**
-- - &
-.[]()&.
-<!-- -->&
-### []()[]()&###
-### []()&###
-### **&###
-### class="n">&###
-### Gnome on Windows**&### Gnome on Windows
-### Notes **&### Notes
-**Summary&**Summary**
-Tape Library T950B**&**Tape Library T950B**
-Â ****The R version 3.0.1 is available on Anselm, along with GUI interface&**The R version 3.0.1 is available on Anselm, along with GUI interface
-^&
-Input:** FASTQ file.&Input: FASTQ file.
-Output:** FASTQ file plus an HTML file containing statistics on the&Output: FASTQ file plus an HTML file containing statistics on the
-*Figure 2.******Â FASTQ file.***&*Figure 2.**FASTQ file.**
-Component:** Hpg-aligner.****&Component:** Hpg-aligner.**
-Input:** VCF&Input:** VCF**
-the corresponding QC and functional annotations.&the corresponding QC and functional annotations.**
-Core features:**&**Core features:**
-Regulatory:**&**Regulatory:**
-Functional annotation**&**Functional annotation**
-Variation**&**Variation**
-Systems biology**&**Systems biology**
-[VNC](../../../salomon/accessing-the-cluster/graphical-user-interface/vnc.html)**.&**[VNC](../../../salomon/accessing-the-cluster/graphical-user-interface/vnc.html)**.
-Workaround:**&**Workaround:**
--g** : Generates extra debugging information usable by GDB. -g3&-g** : Generates extra debugging information usable by GDB. -g3**
--O0** : Suppress all optimizations.&-O0** : Suppress all optimizations.**
-nodes.****&nodes.
-###Compute Nodes Without Accelerator**&###Compute Nodes Without Accelerator
-###Compute Nodes With MIC Accelerator**&###Compute Nodes With MIC Accelerator
-###Compute Nodes With GPU Accelerator**&###Compute Nodes With GPU Accelerator
-###Fat Compute Nodes**&###Fat Compute Nodes
-**Figure Anselm bullx B510 servers****&**Figure Anselm bullx B510 servers**
-### Compute Nodes Summary********&### Compute Nodes Summary
-<p><a href="x-window-system/cygwin-and-x11-forwarding.html" If no able to forward X11 using PuTTY to CygwinX</a>&[If no able to forward X11 using PuTTY to CygwinX](x-window-system/cygwin-and-x11-forwarding.html)
-<p><a href="http://x.cygwin.com/" Install Cygwin</a>&[Install Cygwin](http://x.cygwin.com/)
-Component:**> Hpg-Fastq & FastQC&Component:**> Hpg-Fastq & FastQC**
-Input:** BAM file.&Input:** BAM file.**
-Output:** BAM file plus an HTML file containing statistics. &Output:** BAM file plus an HTML file containing statistics.**
-Component:** GATK.&Component:** GATK.**
-Input:** BAM&Input:** BAM**
-Output:** VCF&Output:** VCF**
-Variant Call Format (VCF)**&**Variant Call Format (VCF)**
-</span></span>&
-/ansys_inc/shared_ les/licensing/lic_admin/anslic_admin&/ansys_inc/shared_les/licensing/lic_admin/anslic_admin
-<td align="left">& |
-However, users need only manage User and CA certificates. Note that your&**However, users need only manage User and CA certificates. Note that your
-X.509 PKI certificates for communication with us.&X.509 PKI certificates for communication with us.**
-PuTTYgen**&**PuTTYgen**
-key](../ssh-keys.html) file if Pageant ****SSH&key](../ssh-keys.html) file if Pageant **SSH
-authentication agent is not used.&authentication agent is not used.**
diff --git a/scripts/preklopeni_dokumentace/source/lastFilter b/scripts/preklopeni_dokumentace/source/lastFilter
deleted file mode 100644
index 00641541ae06f6de1a53cafb4d66b091ce6d5c1e..0000000000000000000000000000000000000000
--- a/scripts/preklopeni_dokumentace/source/lastFilter
+++ /dev/null
@@ -1,70 +0,0 @@
->key.&key.
-</span>&
-`.ssh`&`.ssh` Â directory: 700 (drwx------)
-Authorized_keys,&Authorized_keys, known_hosts and public key (`.pub` file): `644 (-rw-r--r--)`
-Private key&Private key (`id_rsa/id_rsa.ppk` ): `600 (-rw-------)`
- (gnome-session:23691): WARNING **: Cannot open display:& (gnome-session:23691): WARNING **: Cannot open display:**
- &
- &
-Search for the localhost and port number (in this case&**Search for the localhost and port number (in this case
-Preferences](gdmscreensaver.png/@@images/8e80a92f-f691-4d92-8e62-344128dcc00b.png "Screensaver Preferences")](../../../../salomon/gnome_screen.jpg.1)&
-maximum performance**&maximum performance
-Better performance** is obtained by logging on the allocated compute&**Better performance** is obtained by logging on the allocated compute
- class="discreet">&
- id="result_box"&
- class="hps alt-edited">stated &stated in the previous example.
-Water-cooled Compute Nodes With MIC Accelerator**&**Water-cooled Compute Nodes With MIC Accelerator**
-Access from PRACE network:**&**Access from PRACE network:**
-Access from public Internet:**&**Access from public Internet:**
-Access from PRACE network:**&**Access from PRACE network:**
-Access from public Internet:**&**Access from public Internet:**
->VPN client installation&VPN client installation
-Install](https://docs.it4i.cz/salomon/vpn_web_install_2.png/@@images/c2baba93-824b-418d-b548-a73af8030320.png "VPN Install")](../vpn_web_install_2.png)&
-Â [](Salomon_IB_topology.png)&
-###IB single-plane topology - ICEX Mcell**&###IB single-plane topology - ICEX Mcell
-As shown in a diagram [IB&As shown in a diagram &
-and [ &
-SCRATCH](storage.html#shared-filesystems).&
-There are two main shared file systems on Salomon cluster, the [&There are two main shared file systems on Salomon cluster, the [HOME](storage.html#home)and [SCRATCH](storage.html#shared-filesystems).
->Disk usage and quota commands&Disk usage and quota commands
->OpenCL&### OpenCL
-Execution on host**&**Execution on host**
-Execution on host - MPI processes distributed over multiple&**Execution on host - MPI processes distributed over multiple
-Host only node-file:**&**Host only node-file:**
-MIC only node-file**:&MIC only node-file:
-Host and MIC node-file**:&Host and MIC node-file:
-interface Rstudio&interface Rstudio**
-### >&###
-3. >>&3. >
-- >>&- >
->Usage with MPI&Usage with MPI
->>&>
- id="result_box"> &
-<span&
->Introduction&Introduction
->Options&Options
-***[ANSYS&**[ANSYS
-Channel partner](http://www.ansys.com/)***&Channel partner](http://www.ansys.com/)**
-Multiphysics)-**Commercial.**&Multiphysics)-**Commercial.
->1. Common way to run Fluent over pbs file&1. Common way to run Fluent over pbs file
->2. Fast way to run Fluent from command line&2. Fast way to run Fluent from command line
-**Academic**&**Academic
-***&**
-id="result_box"&
-</span>&
-[](Fluent_Licence_2.jpg)&
-Failed to initialize connection subsystem Win 8.1 - 02-10-15 MS&**Failed to initialize connection subsystem Win 8.1 - 02-10-15 MS
diff --git a/scripts/preklopeni_dokumentace/source/list_folder b/scripts/preklopeni_dokumentace/source/list_folder
deleted file mode 100644
index 8b4067625d434fc96dcfc90fa6d43fa549d6f30f..0000000000000000000000000000000000000000
--- a/scripts/preklopeni_dokumentace/source/list_folder
+++ /dev/null
@@ -1,34 +0,0 @@
-anselm-cluster-documentation
-anselm-cluster-documentation/accessing-the-cluster
-anselm-cluster-documentation/accessing-the-cluster/shell-and-data-access
-anselm-cluster-documentation/resource-allocation-and-job-execution
-anselm-cluster-documentation/software
-anselm-cluster-documentation/software/ansys
-anselm-cluster-documentation/software/chemistry
-anselm-cluster-documentation/software/comsol
-anselm-cluster-documentation/software/debuggers
-anselm-cluster-documentation/software/intel-suite
-anselm-cluster-documentation/software/mpi-1
-anselm-cluster-documentation/software/numerical-languages
-anselm-cluster-documentation/software/numerical-libraries
-anselm-cluster-documentation/software/omics-master-1
-anselm-cluster-documentation/storage-1
-get-started-with-it4innovations
-get-started-with-it4innovations/accessing-the-clusters
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer
-get-started-with-it4innovations/obtaining-login-credentials
-salomon
-salomon/accessing-the-cluster
-salomon/hardware-overview-1
-salomon/network-1
-salomon/resource-allocation-and-job-execution
-salomon/software
-salomon/software/ansys
-salomon/software/chemistry
-salomon/software/comsol
-salomon/software/debuggers
-salomon/software/intel-suite
-salomon/software/mpi-1
-salomon/software/numerical-languages
-salomon/storage
diff --git a/scripts/preklopeni_dokumentace/source/list_image_mv b/scripts/preklopeni_dokumentace/source/list_image_mv
deleted file mode 100644
index d543838d34c7422ee24e0a927e33c73f0f969416..0000000000000000000000000000000000000000
--- a/scripts/preklopeni_dokumentace/source/list_image_mv
+++ /dev/null
@@ -1,102 +0,0 @@
-anselm-cluster-documentation/software/omics-master-1/fig2.png
-anselm-cluster-documentation/software/omics-master-1/fig5.png
-anselm-cluster-documentation/software/omics-master-1/fig6.png
-anselm-cluster-documentation/software/omics-master-1/fig3.png
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/TightVNC_login.png
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/putty-tunnel.png
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/gnome-terminal.png
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/gdmscreensaver.png
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/gnome-compute-nodes-over-vnc.png
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/gdmdisablescreensaver.png
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/cygwinX11forwarding.png
-get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/XWinlistentcp.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_004V.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_003V.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PageantV.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_001V.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuTTY_host_Salomon.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuTTY_keyV.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_005V.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuTTY_save_Salomon.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygeneratorV.png
-get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuTTY_open_Salomon.png
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-./docs.it4i.cz/salomon/software.html
-./docs.it4i.cz/salomon/software/intel-suite.html
-./docs.it4i.cz/salomon/software/isv_licenses.html
-./docs.it4i.cz/salomon/software/mpi-1.html
-./docs.it4i.cz/salomon/software/numerical-languages.1.html
-./docs.it4i.cz/salomon/software/numerical-languages.html
-./docs.it4i.cz/salomon/storage.html
-./docs.it4i.cz/sitemap.html
-./docs.it4i.cz/whats-new.html
-./docs.it4i.cz/salomon/index.html
-./docs.it4i.cz/get-started-with-it4innovations/introduction.html
diff --git a/scripts/preklopeni_dokumentace/source/repairIMG b/scripts/preklopeni_dokumentace/source/repairIMG
deleted file mode 100644
index 5a8d1763fd87d5d3e2e40aa52b0ab08aa6e43f75..0000000000000000000000000000000000000000
--- a/scripts/preklopeni_dokumentace/source/repairIMG
+++ /dev/null
@@ -1,123 +0,0 @@
-&
-&
-
-2](../executionaccess2.jpg/@@images/bed3998c-4b82-4b40-83bd-c3528dde2425.jpeg "Execution access 2")&
-&
-&
-&
-&
-&
-&
-&
-&
-&
-&
-&
-**&&
-&
-&
-Â &increases.](fig5.png.1 "fig5.png")
-out.](fig1.png "Fig 1")&out.](fig1.png "Fig 1")
-&
-operation.](images/fig3.png "fig3.png")&operation.](fig3.png "fig3.png")&
-where the position is ambiguous.](images/fig4.png)&where the position is ambiguous.](fig4.png)
-genomic coordinates.](images/fig6.png.1 "fig6.png")&genomic coordinates.](fig6.png.1 "fig6.png")
- [](cygwin-and-x11-forwarding.html)&
-[](putty-tunnel.png)&
-&
-[****](TightVNC_login.png)&
-[](https://docs.it4i.cz/get-started-with-it4innovations/gnome_screen.jpg)&
-[](gdmdisablescreensaver.png)&
-[](../../../../salomon/gnome_screen.jpg.1)&
-[](gnome-terminal.png)&
-[](gnome-compute-nodes-over-vnc.png)&
- [](PageantV.png)&
- [](PuTTY_host_Salomon.png)&
- [](PuTTY_keyV.png)&
- [](PuTTY_save_Salomon.png)&
- [](PuTTY_open_Salomon.png)&
- [](PuttyKeygeneratorV.png)&
- [](PuttyKeygenerator_001V.png)&
- [](PuttyKeygenerator_002V.png)&
- [](20150312_143443.png)&
- [](PuttyKeygenerator_004V.png)&
- [](PuttyKeygenerator_005V.png)&
- [](PuttyKeygenerator_006V.png)&
-[](../vpn_web_login.png)&
-Install](https://docs.it4i.cz/salomon/vpn_web_login_2.png/@@images/be923364-0175-4099-a363-79229b88e252.png "VPN Install")](../vpn_web_login_2.png)&
-Install](https://docs.it4i.cz/salomon/vpn_web_install_2.png/@@images/c2baba93-824b-418d-b548-a73af8030320.png "VPN Install")](../vpn_web_install_2.png)[
-Install](https://docs.it4i.cz/salomon/copy_of_vpn_web_install_3.png/@@images/9c34e8ad-64b1-4e1d-af3a-13c7a18fbca4.png "VPN Install")](../copy_of_vpn_web_install_3.png)&
-Install](https://docs.it4i.cz/salomon/vpn_web_install_4.png/@@images/4cc26b3b-399d-413b-9a6c-82ec47899585.png "VPN Install")](../vpn_web_install_4.png)&
-Install](https://docs.it4i.cz/salomon/vpn_web_download.png/@@images/06a88cce-5f51-42d3-8f0a-f615a245beef.png "VPN Install")](../vpn_web_download.png)&
-Install](https://docs.it4i.cz/salomon/vpn_web_download_2.png/@@images/3358d2ce-fe4d-447b-9e6c-b82285f9796e.png "VPN Install")](../vpn_web_download_2.png)&
-&
-[](../vpn_contacting_https_cluster.png)&
-Cluster](https://docs.it4i.cz/salomon/vpn_contacting_https.png/@@images/ff365499-d07c-4baf-abb8-ce3e15559210.png "VPN Contacting Cluster")](../vpn_contacting_https.png)&
-[](../../anselm-cluster-documentation/anyconnecticon.jpg)&
-[](../../anselm-cluster-documentation/anyconnectcontextmenu.jpg)&
-[](../vpn_contacting.png)&
-login](https://docs.it4i.cz/salomon/vpn_login.png/@@images/5102f29d-93cf-4cfd-8f55-c99c18f196ea.png "VPN login")](../vpn_login.png)&
-Connection](https://docs.it4i.cz/salomon/vpn_successfull_connection.png/@@images/45537053-a47f-48b2-aacd-3b519d6770e6.png "VPN Succesfull Connection")](../vpn_successfull_connection.png)&
-[](../salomon-2)&&
-&
-[](salomon)&
-&
-&
-&
-[](7D_Enhanced_hypercube.png)&
-[](https://docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB%20single-plane%20topology%20-%20ICEX%20Mcell.pdf)&
-[](https://docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB%20single-plane%20topology%20-%20Accelerated%20nodes.pdf)&
-[](Fluent_Licence_1.jpg)&
-[](Fluent_Licence_2.jpg)&
-[](Fluent_Licence_3.jpg)&
-[](Fluent_Licence_4.jpg)&
-&
-&
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-[](gnome-terminal.png)&
-[](gnome-compute-nodes-over-vnc.png)&
-&
-genomic coordinates.](fig6.png.1 "fig6.png")&genomic coordinates.](fig6.png)
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-starts.](images/fig7.png "fig7.png")&starts.](fig7.png)
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-tumor.](images/fig9.png "fig9.png")**&tumor.](fig9.png)
-increases.](fig5.png.1 "fig5.png")&increases.](fig5.png)
diff --git a/scripts/preklopeni_dokumentace/source/replace b/scripts/preklopeni_dokumentace/source/replace
deleted file mode 100644
index a95df81e42d694997a5e586e71a9b7630ecc0196..0000000000000000000000000000000000000000
--- a/scripts/preklopeni_dokumentace/source/replace
+++ /dev/null
@@ -1,128 +0,0 @@
-style="text-align: left; float: none; ">&
-class="anchor-link">&
-class="Apple-converted-space">&
-class="discreet visualHighlight">&
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-class="hps">&
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-class="hps trans-target-highlight">&
-class="internal-link">&
-class="internal-link"><span id="result_box" class="short_text"><span&
-class="monospace">&
-class="monospace">LAPACKE</span> module, which includes Intel's LAPACKE&LAPACKE modelu, which includes Intel's LAPACKE
-class="n">&
-class="n">&
-class="pre">&
-class="pun">node_group_key&
-class="short_text"><span&
-class="smarterwiki-popup-bubble-body"><span&
-class="smarterwiki-popup-bubble-links-container"><span&
-class="smarterwiki-popup-bubble-links-row">[{.smarterwiki-popup-bubble-link-favicon}](http://maps.google.com/maps?q=HDF5%20icc%20serial%09pthread%09hdf5%2F1.8.13%09%24HDF5_INC%20%24HDF5_SHLIB%09%24HDF5_INC%20%24HDF5_CPP_LIB%09%24HDF5_INC%20%24HDF5_F90_LIB%0A%0AHDF5%20icc%20parallel%20MPI%0A%09pthread%2C%20IntelMPI%09hdf5-parallel%2F1.8.13%09%24HDF5_INC%20%24HDF5_SHLIB%09Not%20supported%09%24HDF5_INC%20%24HDF5_F90_LIB "Search Google Maps"){.smarterwiki-popup-bubble-link}[{.smarterwiki-popup-bubble-link-favicon}](http://www.google.com/search?q=HDF5%20icc%20serial%09pthread%09hdf5%2F1.8.13%09%24HDF5_INC%20%24HDF5_SHLIB%09%24HDF5_INC%20%24HDF5_CPP_LIB%09%24HDF5_INC%20%24HDF5_F90_LIB%0A%0AHDF5%20icc%20parallel%20MPI%0A%09pthread%2C%20IntelMPI%09hdf5-parallel%2F1.8.13%09%24HDF5_INC%20%24HDF5_SHLIB%09Not%20supported%09%24HDF5_INC%20%24HDF5_F90_LIB "Search Google"){.smarterwiki-popup-bubble-link}[](http://www.google.com/search?hl=com&btnI=I'm+Feeling+Lucky&q=HDF5%20icc%20serial%09pthread%09hdf5%2F1.8.13%09%24HDF5_INC%20%24HDF5_SHLIB%09%24HDF5_INC%20%24HDF5_CPP_LIB%09%24HDF5_INC%20%24HDF5_F90_LIB%0A%0AHDF5%20icc%20parallel%20MPI%0A%09pthread%2C%20IntelMPI%09hdf5-parallel%2F1.8.13%09%24HDF5_INC%20%24HDF5_SHLIB%09Not%20supported%09%24HDF5_INC%20%24HDF5_F90_LIB+wikipedia "Search Wikipedia"){.smarterwiki-popup-bubble-link}</span></span></span></span></span>&
-class="smarterwiki-popup-bubble-links"><span&
-class="smarterwiki-popup-bubble smarterwiki-popup-bubble-active smarterwiki-popup-bubble-flipped"><span&&
-class="smarterwiki-popup-bubble-tip"></span><span
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-<span><span>Introduction&###Introduction
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- style="text-align: left; float: none; ">Check Putty settings:&
- style="text-align: left; float: none; ">Enable X11&Enable X11
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-</div>&
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-{.mw-redirect}&
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-{.prettyprint}&
-{.prettyprint .lang-cpp}&
-{.prettyprint .lang-sh}&
-{.prettyprint .lang-sh .prettyprinted}&
-{#putty---before-we-start-ssh-connection style="text-align: start; "}&
-{#resources-allocation-policy}&
-{#schematic-overview}&
-{.screen}&
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-{style="text-align: left; "}&
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-{#putty---before-we-start-&
-<span class="pln">&
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diff --git a/scripts/preklopeni_dokumentace/source/tab b/scripts/preklopeni_dokumentace/source/tab
deleted file mode 100644
index bec6eca8f5bc1ba6a48cd28c2a1c38babbcf13ef..0000000000000000000000000000000000000000
--- a/scripts/preklopeni_dokumentace/source/tab
+++ /dev/null
@@ -1,28 +0,0 @@
-<table>&\\
-</th>&\\
-</td>&\\
-<td align="left">& |
-</tr>& |
-<tr class="odd">&\\
-<tr class="even">&\\
-</tbody>&\\
-</table>&\\
-<p> class="s1">&
-</p>&\\
-<colgroup>&\\
-<col width="50%" />&\\
-</colgroup>&\\
-<thead>&\\
-<tr class="header">&\\
-<tbody>&\\
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-</thead>& | --- | --- |
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diff --git a/scripts/preklopeni_dokumentace/source/tabREPLACE b/scripts/preklopeni_dokumentace/source/tabREPLACE
deleted file mode 100644
index 7ed3455feb6bc8c41119e9ab92ce8a67644abb74..0000000000000000000000000000000000000000
--- a/scripts/preklopeni_dokumentace/source/tabREPLACE
+++ /dev/null
@@ -1,147 +0,0 @@
- compute nodes number of workers start-up time[s]&|compute nodes|number of workers|start-up time[s]|
- --------------- ------------------- --------------------&|---|---|---|
- 16 384 831&|16|384|831|
- 8 192 807&|8|192|807|
- 4 96 483&|4|96|483|
- 2 48 16&|2|48|16|
- Node type Count Range Memory Cores [Access](resource-allocation-and-job-execution/resources-allocation-policy.html)&|Node type|Count|Range|Memory|Cores|[Access](resource-allocation-and-job-execution/resources-allocation-policy.html)|
- ---------------------------- ------- --------------- -------- ------------- --------------------------------------------------------------------------------------------------&|---|---|---|---|---|---|
- Nodes without accelerator 180 cn[1-180] 64GB 16 @ 2.4Ghz qexp, qprod, qlong, qfree&|Nodes without accelerator|180|cn[1-180]|64GB|16 @ 2.4Ghz|qexp, qprod, qlong, qfree|
- Nodes with GPU accelerator 23 cn[181-203] 96GB 16 @ 2.3Ghz qgpu, qprod&|Nodes with GPU accelerator|23|cn[181-203]|96GB|16 @ 2.3Ghz|qgpu, qprod|
- Nodes with MIC accelerator 4 cn[204-207] 96GB 16 @ 2.3GHz qmic, qprod&|Nodes with MIC accelerator|4|cn[204-207]|96GB|16 @ 2.3GHz|qmic, qprod|
- Fat compute nodes 2 cn[208-209] 512GB 16 @ 2.4GHz qfat, qprod&|Fat compute nodes|2|cn[208-209]|512GB|16 @ 2.4GHz|qfat, qprod|
- Node Processor Memory Accelerator&|Node|Processor|Memory|Accelerator|
- ------------------ --------------------------------------- -------- ----------------------&|---|---|---|---|
- w/o accelerator 2x Intel Sandy Bridge E5-2665, 2.4GHz 64GB -&|w/o accelerator|2x Intel Sandy Bridge E5-2665, 2.4GHz|64GB|-|
- GPU accelerated 2x Intel Sandy Bridge E5-2470, 2.3GHz 96GB NVIDIA Kepler K20&|GPU accelerated|2x Intel Sandy Bridge E5-2470, 2.3GHz|96GB|NVIDIA Kepler K20|
- MIC accelerated 2x Intel Sandy Bridge E5-2470, 2.3GHz 96GB Intel Xeon Phi P5110&|MIC accelerated|2x Intel Sandy Bridge E5-2470, 2.3GHz|96GB|Intel Xeon Phi P5110|
- Fat compute node 2x Intel Sandy Bridge E5-2665, 2.4GHz 512GB -&|Fat compute node|2x Intel Sandy Bridge E5-2665, 2.4GHz|512GB|-|
- Login address Port Protocol Login node&|Login address|Port|Protocol|Login node|
- ------------------------ ------ ---------- -----------------------------------------&|---|---|---|---|
- salomon.it4i.cz 22 ssh round-robin DNS record for login[1-4]&|salomon.it4i.cz|22|ssh|round-robin DNS record for login[1-4]|
- login1.salomon.it4i.cz 22 ssh login1&|login1.salomon.it4i.cz|22|ssh|login1|
- login2.salomon.it4i.cz 22 ssh login2&|login1.salomon.it4i.cz|22|ssh|login1|
- login3.salomon.it4i.cz 22 ssh login3&|login1.salomon.it4i.cz|22|ssh|login1|
- login4.salomon.it4i.cz 22 ssh login4&|login1.salomon.it4i.cz|22|ssh|login1|
- Toolchain Module(s)&|Toolchain|Module(s)|
- -------------------- ------------------------------------------------&|---|----|
- GCC GCC&|GCC|GCC|
- ictce icc, ifort, imkl, impi&|ictce|icc, ifort, imkl, impi|
- intel GCC, icc, ifort, imkl, impi&|intel|GCC, icc, ifort, imkl, impi|
- gompi GCC, OpenMPI&|gompi|GCC, OpenMPI|
- goolf BLACS, FFTW, GCC, OpenBLAS, OpenMPI, ScaLAPACK&|goolf|BLACS, FFTW, GCC, OpenBLAS, OpenMPI, ScaLAPACK|
- >iompi OpenMPI, icc, ifort&|iompi|OpenMPI, icc, ifort|
- iccifort icc, ifort&|iccifort|icc, ifort|
- Login address Port Protocol Login node& |Login address|Port|Protocol|Login node|
- ------------------------------ ------ ---------- ----------------------------------& |---|---|
- salomon-prace.it4i.cz 2222 gsissh login1, login2, login3 or login4& |salomon-prace.it4i.cz|2222|gsissh|login1, login2, login3 or login4|
- login1-prace.salomon.it4i.cz 2222 gsissh login1& |login1-prace.salomon.it4i.cz|2222|gsissh|login1|
- login2-prace.salomon.it4i.cz 2222 gsissh login2& |login2-prace.salomon.it4i.cz|2222|gsissh|login2|
- login3-prace.salomon.it4i.cz 2222 gsissh login3& |login3-prace.salomon.it4i.cz|2222|gsissh|login3|
- login4-prace.salomon.it4i.cz 2222 gsissh login4& |login4-prace.salomon.it4i.cz|2222|gsissh|login4|
- |Login address|Port|Protocol|Login node|& |Login address|Port|Protocol|Login node|
- ------------------------ ------ ---------- ----------------------------------& |---|---|
- salomon.it4i.cz 2222 gsissh login1, login2, login3 or login4& |salomon.it4i.cz|2222|gsissh|login1, login2, login3 or login4|
- login1.salomon.it4i.cz 2222 gsissh login1& |login1.salomon.it4i.cz|2222|gsissh|login1|
- login2.salomon.it4i.cz 2222 gsissh login2& |login2-prace.salomon.it4i.cz|2222|gsissh|login2|
- login3.salomon.it4i.cz 2222 gsissh login3& |login3-prace.salomon.it4i.cz|2222|gsissh|login3|
- login4.salomon.it4i.cz 2222 gsissh login4& |login4-prace.salomon.it4i.cz|2222|gsissh|login4|
- Login address Port Node role& |Login address|Port|Node role|
- ------------------------------- ------ -----------------------------& |---|---|
- gridftp-prace.salomon.it4i.cz 2812 Front end /control server& |gridftp-prace.salomon.it4i.cz|2812|Front end /control server|
- lgw1-prace.salomon.it4i.cz 2813 Backend / data mover server& |lgw1-prace.salomon.it4i.cz|2813|Backend / data mover server|
- lgw2-prace.salomon.it4i.cz 2813 Backend / data mover server& |lgw2-prace.salomon.it4i.cz|2813|Backend / data mover server|
- lgw3-prace.salomon.it4i.cz 2813 Backend / data mover server& |lgw3-prace.salomon.it4i.cz|2813|Backend / data mover server|
- Login address Port Node role& |Login address|Port|Node role|
- ------------------------- ------ -----------------------------& |---|---|
- gridftp.salomon.it4i.cz 2812 Front end /control server& |gridftp.salomon.it4i.cz|2812|Front end /control server|
- lgw1.salomon.it4i.cz 2813 Backend / data mover server& |lgw1.salomon.it4i.cz|2813|Backend / data mover server|
- lgw2.salomon.it4i.cz 2813 Backend / data mover server& |lgw2.salomon.it4i.cz|2813|Backend / data mover server|
- lgw3.salomon.it4i.cz 2813 Backend / data mover server& |lgw3.salomon.it4i.cz|2813|Backend / data mover server|
- File system mount point Filesystem Comment& |File system mount point|Filesystem|Comment|
- ------------------------- ------------ ----------------------------------------------------------------& |---|---|
- /home Lustre Default HOME directories of users in format /home/prace/login/& |/home|Lustre|Default HOME directories of users in format /home/prace/login/|
- /scratch Lustre Shared SCRATCH mounted on the whole cluster& |/scratch|Lustre|Shared SCRATCH mounted on the whole cluster|
- Data type Default path& |Data type|Default path|
- ------------------------------ ---------------------------------& |---|---|
- large project files /scratch/work/user/prace/login/& |large project files|/scratch/work/user/prace/login/|
- large scratch/temporary data /scratch/temp/& |large scratch/temporary data|/scratch/temp/|
- ---------------------------------------------------------------------------------------------------------------------------------------------&
- queue Active project Project resources Nodes priority authorization walltime&|queue|Active project|Project resources|Nodes|priority|authorization|walltime default/max|
- default/max&
- --------------------- -|---|---|---|--------------------- ---------- --------------- -------------&|---|---|
- **qexp** no none required 32 nodes, max 8 per user 150 no 1 / 1h& |**qexp** Express queue|no|none required|32 nodes, max 8 per user|150|no|1 / 1h|
- Express queue&\\
- **qprace** yes > 0 >1006 nodes, max 86 per job 0 no 24 / 48h&|**qprace** Production queue|yes|> 0|1006 nodes, max 86 per job|0|no|24 / 48h|
- Production queue&\\
- **qfree** yes none required 752 nodes, max 86 per job -1024 no 12 / 12h&|**qfree** Free resource queue|yes|none required|752 nodes, max 86 per job|-1024|no|12 / 12h|
- Free resource queue&\\
- ---------------------------------------------------------------------------------------------------------------------------------------------&
- Port Protocol& |Port|Protocol|
- ------ ----------& |---|---|
- 22 ssh& |22|ssh|
- 80 http& |80|http|
- 443 https& |443|https|
- 9418 git& |9418|git|
- Node Count Processor Cores Memory Accelerator& |Node|Count|Processor|Cores|Memory|Accelerator|
- ----------------- ------- ---------------------------------- ------- -------- --------------------------------------------& |---|---|
- w/o accelerator 576 2x Intel Xeon E5-2680v3, 2.5GHz 24 128GB -& |w/o accelerator|576|2x Intel Xeon E5-2680v3, 2.5GHz|24|128GB|-|
- MIC accelerated 432 2x Intel Xeon E5-2680v3, 2.5GHz 24 128GB 2x Intel Xeon Phi 7120P, 61cores, 16GB RAM& |MIC accelerated|432|2x Intel Xeon E5-2680v3, 2.5GHz|24|128GB|2x Intel Xeon Phi 7120P, 61cores, 16GB RAM|
- Node Count Processor Cores Memory GPU Accelerator& |Node|Count|Processor|Cores|Memory|GPU Accelerator|
- --------------- ------- --------------------------------- ------- -------- ------------------------------& |---|---|
- visualization 2 2x Intel Xeon E5-2695v3, 2.3GHz 28 512GB NVIDIA QUADRO K5000, 4GB RAM& |visualization|2|2x Intel Xeon E5-2695v3, 2.3GHz|28|512GB|NVIDIA QUADRO K5000, 4GB RAM|
- Hypercube dimension& |Hypercube|dimension|
- --------------------- -------------------------------------------& |---|---|
- 1D ehc_1d& |1D|ehc_1d|
- 2D ehc_2d& |2D|ehc_2d|
- 3D ehc_3d& |3D|ehc_3d|
- 4D ehc_4d& |4D|ehc_4d|
- 5D ehc_5d& |5D|ehc_5d|
- 6D ehc_6d& |6D|ehc_6d|
- 7D ehc_7d& |7D|ehc_7d|
- Node type Count Short name Long name Rack& |Node type|Count|Short name|Long name|Rack|
- -------------------------------------- ------- ------------------ -------------------------- -------& |---|---|
- M-Cell compute nodes w/o accelerator 576 cns1 -cns576 r1i0n0 - r4i7n17 1-4& |M-Cell compute nodes w/o accelerator|576|cns1 -cns576|r1i0n0 - r4i7n17|1-4|
- compute nodes MIC accelerated 432 cns577 - cns1008 r21u01n577 - r37u31n1008 21-38& |compute nodes MIC accelerated|432|cns577 - cns1008|r21u01n577 - r37u31n1008|21-38|
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------&
- Mountpoint Usage Protocol Net Capacity Throughput Limitations Access Services& |Mountpoint|Usage|Protocol|Net|Capacity|Throughput|Limitations|Access|
- ---------------------------------------------- -------------------------------- ------------- -------------- ------------ ------------- ------------------------- -----------------------------& |---|---|
- /home home directory NFS, 2-Tier 0.5 PB 6 GB/s Quota 250GB Compute and login nodes backed up&| /home|home directory|NFS, 2-Tier|0.5 PB|6 GB/s|Quota 250GB|Compute and login nodes|backed up|
- /scratch/work large project files Lustre 1.69 PB 30 GB/s Quota Compute and login nodes none& |/scratch/work|large project files|Lustre|1.69 PB|30 GB/s|Quota|Compute and login nodes|none|
- 1TB&
- /scratch/temp job temporary data Lustre 1.69 PB 30 GB/s Quota 100TB Compute and login nodes files older 90 days removed& |/scratch/temp|job temporary data|Lustre|1.69 PB|30 GB/s|Quota 100TB|Compute and login nodes|files older 90 days removed|
- /ramdisk job temporary data, node local local 120GB 90 GB/s none Compute nodes purged after job ends& |/ramdisk|job temporary data, node local|local|120GB|90 GB/s|none|Compute nodes|purged after job ends|
- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------&
- Application Version module& |Application|Version|module|
- ------------- -------------- ---------------------& |---|---|
- **R** R 3.1.1 R/3.1.1-intel-2015b& |**R**|R 3.1.1|R/3.1.1-intel-2015b|
- **Rstudio** Rstudio 0.97 Rstudio& |**Rstudio**|Rstudio 0.97|Rstudio|
- 24 MPI**&**24 MPI**
- --------------- -----------------------& |**Version**|**Module**|
-**Version** **Module**& |---|---|
- 2016 Update 2 Advisor/2016_update2& |2016 Update 2|Advisor/2016_update2|
- 2016 Update 1 Inspector/2016_update1& |2016 Update 1|Inspector/2016_update1|
- Interface Integer type& |Interface|Integer type|
- ----------- -----------------------------------------------& |---|---|
- LP64 32-bit, int, integer(kind=4), MPI_INT& |LP64|32-bit, int, integer(kind=4), MPI_INT|
- ILP64 64-bit, long int, integer(kind=8), MPI_INT64 & |ILP64|64-bit, long int, integer(kind=8), MPI_INT64|
- Parameter Value& |Parameter|Value|
- ------------------------------------------------- -----------------------------& |---|---|
- >max number of atoms 200& |max number of atoms|200|
- >max number of valence orbitals 300& |max number of valence orbitals|300|
- >max number of basis functions 4095& |max number of basis functions|4095|
- >max number of states per symmmetry 20& |max number of states per symmmetry|20|
- >max number of state symmetries 16& |max number of state symmetries|16|
- >max number of records 200& |max number of records|200|
- >max number of primitives >maxbfn x [2]& |max number of primitives|maxbfn x [2]|
- Address Port Protocol& |Address|Port|Protocol|
- -------------------------------------------------- ---------------------------------- -----------------------------------------& |---|---|
- anselm.it4i.cz 22 scp, sftp& |anselm.it4i.cz|22|scp, sftp|
- login1.anselm.it4i.cz 22 scp, sftp& |login1.anselm.it4i.cz|22|scp, sftp|
- login2.anselm.it4i.cz 22 scp, sftp& |login2.anselm.it4i.cz|22|scp, sftp|
- class="discreet">dm1.anselm.it4i.cz 22 class="discreet">scp, sftp</span>& |dm1.anselm.it4i.cz|22|scp, sftp|
- Login address Port Protocol Login node& |Login address|Port|Protocol|Login node|
- ----------------------- ------ ---------- ----------------------------------------------& |---|----|
- anselm.it4i.cz 22 ssh round-robin DNS record for login1 and login2& |anselm.it4i.cz|22|ssh|round-robin DNS record for login1 and login2|
- login1.anselm.it4i.cz 22 ssh login1& |login1.anselm.it4i.cz|22|ssh|login1|
- login2.anselm.it4i.cz 22 ssh login2& |login2.anselm.it4i.cz|22|ssh|login2|