EmbryoGen
About
This is my next-gen simulator, in which I am trying to implement the best of from my previous and current work in the field of simulators/generators for producing realistically looking images for bechmarking of the image processing, namely cell/nuclei segmentation and tracking.
The simulator can display its progress online via various tools, e.g. ZeroMQ-ish sends display commands to a SimViewer.
Installing and starting the simulator
First, resolve all dependecies --- make sure this is installed on your system:
Second, download, configure, build and run:
git clone https://github.com/xulman/EmbryoGen.git
cd EmbryoGen/
mkdir BUILD
cd BUILD/
ccmake ..
make -j4
ln -s ../2013-07-25_1_1_9_0_2_0_0_1_0_0_0_0_9_12.ics
./embryogen randomDrosophila