From 3ba3b74a22d143f79da4dad80f2c4ce87d930d4c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Ko=C5=BEusznik?= <jan@kozusznik.cz>
Date: Fri, 18 May 2018 10:25:40 +0200
Subject: [PATCH] repo: removing hass_snakemake_spim project
---
haas-snakemake-spim/pom.xml | 89 --------------
.../it4i/fiji/haas_snakemake_spim/.gitignore | 0
.../fiji/haas_snakemake_spim/Constants.java | 31 -----
.../haas_snakemake_spim/TestingConstants.java | 63 ----------
.../commands/CheckStatusOfHaaS.java | 110 ------------------
.../commands/RunWithHaaS.java | 100 ----------------
.../fiji/haas_snakemake_spim/ui/.gitignore | 1 -
.../ui/CheckStatusOfHaaS.fxml | 19 ---
.../ui/CheckStatusOfHaaSController.java | 95 ---------------
.../ui/CheckStatusOfHaaSWindow.java | 40 -------
.../haas_snakemake_spim/ui/package-info.java | 8 --
.../src/main/resources/.gitignore | 1 -
.../configuration.properties.template | 5 -
13 files changed, 562 deletions(-)
delete mode 100644 haas-snakemake-spim/pom.xml
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/.gitignore
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/Constants.java
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/TestingConstants.java
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/CheckStatusOfHaaS.java
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/RunWithHaaS.java
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/.gitignore
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaS.fxml
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSController.java
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSWindow.java
delete mode 100644 haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/package-info.java
delete mode 100644 haas-snakemake-spim/src/main/resources/.gitignore
delete mode 100644 haas-snakemake-spim/src/main/resources/configuration.properties.template
diff --git a/haas-snakemake-spim/pom.xml b/haas-snakemake-spim/pom.xml
deleted file mode 100644
index ebd9e181..00000000
--- a/haas-snakemake-spim/pom.xml
+++ /dev/null
@@ -1,89 +0,0 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
- <modelVersion>4.0.0</modelVersion>
- <parent>
- <groupId>cz.it4i.fiji</groupId>
- <artifactId>haas-parent</artifactId>
- <version>0.0.1-SNAPSHOT</version>
- <relativePath> ../haas-parent/pom.xml</relativePath>
- </parent>
- <artifactId>haas-snakemake-spim</artifactId>
- <packaging>jar</packaging>
-
- <name>${license.projectName}</name>
- <description>Plugin for starting SPIM automated workflowby IT4I HaaS.</description>
- <url>https://code.it4i.cz/fiji/haas-java-client/haas-spim-benchmark</url>
- <inceptionYear>2018</inceptionYear>
- <organization>
- <name>${organization.name}</name>
- <url>${organization.url}</url>
- </organization>
- <licenses>
- <license>
- <name>${license.name}</name>
- <url>${license.url}</url>
- <distribution>${license.distribution}</distribution>
- </license>
- </licenses>
-
- <developers>
- <developer>
- <id>koz01</id>
- <name>Jan Kožusznik</name>
- <url>http://www.kozusznik.cz</url>
- </developer>
- </developers>
- <contributors>
- <contributor>
- <name>None</name>
- </contributor>
- </contributors>
-
- <mailingLists>
- <mailingList>
- <name>ImageJ Forum</name>
- <archive>http://forum.imagej.net/</archive>
- </mailingList>
- </mailingLists>
-
- <scm>
- <connection>${scm.connection}</connection>
- <developerConnection>${scm.developerConnection}</developerConnection>
- <tag>${scm.tag}</tag>
- <url>${scm.url}</url>
- </scm>
- <issueManagement>
- <system>${issueManagement.system}</system>
- <url>${issueManagement.url}</url>
- </issueManagement>
- <ciManagement>
- <system>None</system>
- </ciManagement>
- <properties>
- <license.projectName>SPIM over HaaS</license.projectName>
- <license.licenseName>${license.base.licenseName}</license.licenseName>
- <license.copyrightOwners>${license.base.copyrightOwners}</license.copyrightOwners>
- </properties>
- <dependencies>
- <dependency>
- <groupId>net.imagej</groupId>
- <artifactId>imagej</artifactId>
- </dependency>
-
- <dependency>
- <groupId>cz.it4i.fiji</groupId>
- <artifactId>haas-imagej-client</artifactId>
- <version>0.0.1-SNAPSHOT</version>
- </dependency>
- <!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-api -->
- <dependency>
- <groupId>org.slf4j</groupId>
- <artifactId>slf4j-api</artifactId>
- </dependency>
- <!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-jdk14 -->
- <dependency>
- <groupId>org.slf4j</groupId>
- <artifactId>slf4j-simple</artifactId>
- </dependency>
- </dependencies>
-</project>
\ No newline at end of file
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/.gitignore b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/.gitignore
deleted file mode 100644
index e69de29b..00000000
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/Constants.java b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/Constants.java
deleted file mode 100644
index 984071e8..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/Constants.java
+++ /dev/null
@@ -1,31 +0,0 @@
-package cz.it4i.fiji.haas_snakemake_spim;
-
-import cz.it4i.fiji.haas_java_client.Configuration;
-
-public class Constants extends Configuration {
-
- public Constants() {
- super("configuration.properties");
- }
-
- public String getProjectId() {
- return getValue("PROJECT_ID");
- }
-
- public String getPassword() {
- return getValue("PASSWORD");
- }
-
- public String getUserName() {
- return getValue("USER_NAME");
- }
-
- public String getPhone() {
- return getValue("PHONE");
- }
-
- public String getEmail() {
- return getValue("EMAIL");
- }
-
-}
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/TestingConstants.java b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/TestingConstants.java
deleted file mode 100644
index a82879df..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/TestingConstants.java
+++ /dev/null
@@ -1,63 +0,0 @@
-package cz.it4i.fiji.haas_snakemake_spim;
-
-import cz.it4i.fiji.haas_java_client.Settings;
-
-public interface TestingConstants {
-
- static Settings getSettings() {
- Constants constants = new Constants();
- long templateId = 2l;
- int timeOut = 9600;
- long clusterNodeType = 6l;
-
-
- return new Settings() {
-
- @Override
- public String getUserName() {
- return constants.getUserName();
- }
-
- @Override
- public String getPhone() {
- return constants.getPhone();
- }
-
- @Override
- public String getPassword() {
- return constants.getPassword();
- }
-
- @Override
- public String getEmail() {
- return constants.getEmail();
- }
-
- @Override
- public long getTemplateId() {
- return templateId;
- }
-
- @Override
- public int getTimeout() {
- return timeOut;
- }
-
- @Override
- public long getClusterNodeType() {
- return clusterNodeType;
- }
-
- @Override
- public String getProjectId() {
- return constants.getProjectId();
- }
-
- @Override
- public String getJobName() {
- return "HaaS-Snakemake-SPIM";
- }
- };
- }
-
-}
\ No newline at end of file
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/CheckStatusOfHaaS.java b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/CheckStatusOfHaaS.java
deleted file mode 100644
index 49fcbf48..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/CheckStatusOfHaaS.java
+++ /dev/null
@@ -1,110 +0,0 @@
-package cz.it4i.fiji.haas_snakemake_spim.commands;
-
-import java.awt.Frame;
-import java.io.File;
-import java.nio.file.Path;
-import java.nio.file.Paths;
-import java.util.Collection;
-
-import javax.swing.WindowConstants;
-
-import org.scijava.Context;
-import org.scijava.command.Command;
-import org.scijava.log.LogService;
-import org.scijava.plugin.Parameter;
-import org.scijava.plugin.Plugin;
-import org.scijava.ui.ApplicationFrame;
-import org.scijava.ui.UIService;
-import org.scijava.widget.UIComponent;
-
-import cz.it4i.fiji.haas.JobManager;
-import cz.it4i.fiji.haas.JobManager.JobInfo;
-import cz.it4i.fiji.haas.ui.DummyProgress;
-import cz.it4i.fiji.haas.ui.ModalDialogs;
-import cz.it4i.fiji.haas.ui.ProgressDialog;
-import cz.it4i.fiji.haas_snakemake_spim.TestingConstants;
-import cz.it4i.fiji.haas_snakemake_spim.ui.CheckStatusOfHaaSWindow;
-import net.imagej.ImageJ;
-
-/**
- *
- * @author koz01
- *
- */
-@Plugin(type = Command.class, headless = true, menuPath = "Plugins>Check status of HaaS")
-public class CheckStatusOfHaaS implements Command {
-
- @Parameter
- private LogService log;
-
- @Parameter(label = "Work directory", persist = true, style = "directory")
- private File workDirectory;
-
- @Parameter
- private UIService uiService;
-
- @Parameter
- private Context context;
-
- private JobManager jobManager;
-
- @Override
- public void run() {
- jobManager = new JobManager(getWorkingDirectoryPath(), TestingConstants.getSettings());
- if (uiService.isHeadless()) {
- downloadAll();
- } else {
- CheckStatusOfHaaSWindow window;
- window = ModalDialogs.doModal(new CheckStatusOfHaaSWindow(getFrame(), context),
- WindowConstants.DISPOSE_ON_CLOSE);
- ProgressDialog dialog = ModalDialogs.doModal(new ProgressDialog(window),
- WindowConstants.DO_NOTHING_ON_CLOSE);
- dialog.setTitle("Downloading info about jobs");
- Collection<JobInfo> jobs = jobManager.getJobs();
- int count = 0;
- for (JobInfo ji : jobs) {
- String item;
- dialog.addItem(item = "job id:" + ji.getId());
- window.addJob(ji);
- dialog.itemDone(item);
- dialog.setCount(count, jobs.size());
- count++;
- }
- dialog.done();
- }
-
- }
-
- private Frame getFrame() {
- ApplicationFrame af = uiService.getDefaultUI().getApplicationFrame();
- if (af instanceof Frame) {
- return (Frame) af;
- } else if (af instanceof UIComponent) {
- Object component = ((UIComponent<?>) af).getComponent();
- if (component instanceof Frame) {
- return (Frame) component;
- }
- }
- return null;
- }
-
- private void downloadAll() {
- for (JobInfo id : jobManager.getJobs()) {
- System.out.println("Job " + id.getId() + " needs download");
- jobManager.downloadJob(id.getId(), new DummyProgress());
- }
- }
-
- private Path getWorkingDirectoryPath() {
- return Paths.get(workDirectory.toString());
- }
-
- public static void main(final String... args) {
- // Launch ImageJ as usual.
- final ImageJ ij = new ImageJ();
- ij.launch(args);
-
- ij.command().run(CheckStatusOfHaaS.class, true);
- }
-
-}
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/RunWithHaaS.java b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/RunWithHaaS.java
deleted file mode 100644
index 8fc4df61..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/commands/RunWithHaaS.java
+++ /dev/null
@@ -1,100 +0,0 @@
-package cz.it4i.fiji.haas_snakemake_spim.commands;
-
-import java.awt.Frame;
-import java.io.File;
-import java.io.IOException;
-import java.nio.file.Files;
-import java.nio.file.Path;
-import java.nio.file.Paths;
-import java.util.Collection;
-import java.util.stream.Collectors;
-
-import javax.swing.WindowConstants;
-
-import org.scijava.Context;
-import org.scijava.command.Command;
-import org.scijava.log.LogService;
-import org.scijava.plugin.Parameter;
-import org.scijava.plugin.Plugin;
-import org.scijava.ui.ApplicationFrame;
-import org.scijava.ui.UIService;
-import org.scijava.widget.UIComponent;
-
-import cz.it4i.fiji.haas.JobManager;
-import cz.it4i.fiji.haas.ui.ModalDialogs;
-import cz.it4i.fiji.haas.ui.ProgressDialog;
-import cz.it4i.fiji.haas_java_client.HaaSClient;
-import cz.it4i.fiji.haas_snakemake_spim.TestingConstants;
-import net.imagej.ImageJ;
-
-/**
- *
- * @author koz01
- *
- */
-@Plugin(type = Command.class, headless = true, menuPath = "Plugins>Run with HaaS")
-public class RunWithHaaS implements Command {
-
- @Parameter
- private UIService uiService;
-
- @Parameter
- private LogService log;
-
- @Parameter(label = "Work directory", persist = true, style = "directory")
- private File workDirectory;
-
- @Parameter(label = "Data directory", persist = true, style = "directory")
- private File dataDirectory;
-
- @Parameter
- private Context context;
-
- private JobManager jobManager;
-
- @Override
- public void run() {
- try {
- jobManager = new JobManager(getWorkingDirectoryPath(), TestingConstants.getSettings());
- ProgressDialog dialog = ModalDialogs.doModal(new ProgressDialog(getFrame(), "Starting job"),
- WindowConstants.DO_NOTHING_ON_CLOSE);
-
- jobManager.startJob(
- getContent(dataDirectory).stream().map(HaaSClient::getUploadingFile).collect(Collectors.toList()),
- dialog);
- dialog.done();
- } catch (IOException e) {
- log.error(e);
- }
- }
-
- private Path getWorkingDirectoryPath() {
- return Paths.get(workDirectory.toString());
- }
-
- private Collection<Path> getContent(File dataDirectory) throws IOException {
- return Files.list(Paths.get(dataDirectory.toString())).collect(Collectors.toList());
- }
-
- private Frame getFrame() {
- ApplicationFrame af = uiService.getDefaultUI().getApplicationFrame();
- if (af instanceof Frame) {
- return (Frame) af;
- } else if (af instanceof UIComponent) {
- Object component = ((UIComponent<?>) af).getComponent();
- if (component instanceof Frame) {
- return (Frame) component;
- }
- }
- return null;
- }
-
- public static void main(final String... args) {
- // Launch ImageJ as usual.
- final ImageJ ij = new ImageJ();
- ij.launch(args);
-
- ij.command().run(RunWithHaaS.class, true);
- }
-
-}
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/.gitignore b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/.gitignore
deleted file mode 100644
index 702c8b4d..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/.gitignore
+++ /dev/null
@@ -1 +0,0 @@
-/Constants.java
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaS.fxml b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaS.fxml
deleted file mode 100644
index 07201409..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaS.fxml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<?import javafx.scene.control.TableColumn?>
-<?import javafx.scene.control.TableView?>
-<?import javafx.scene.layout.BorderPane?>
-
-<BorderPane maxHeight="-Infinity" maxWidth="-Infinity" minHeight="-Infinity" minWidth="-Infinity" prefHeight="400.0" prefWidth="912.0" xmlns="http://javafx.com/javafx/8.0.65" xmlns:fx="http://javafx.com/fxml/1" fx:controller="cz.it4i.fiji.haas_snakemake_spim.ui.CheckStatusOfHaaSController">
- <center>
- <TableView fx:id="jobs" prefHeight="400.0" prefWidth="675.0" BorderPane.alignment="CENTER">
- <columns>
- <TableColumn prefWidth="75.0" text="Job Id" />
- <TableColumn prefWidth="149.0" text="Status" />
- <TableColumn prefWidth="230.0" text="Creation time" />
- <TableColumn prefWidth="230.0" text="Start time" />
- <TableColumn prefWidth="230.0" text="End Time" />
- </columns>
- </TableView>
- </center>
-</BorderPane>
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSController.java b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSController.java
deleted file mode 100644
index 6e73eb6b..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSController.java
+++ /dev/null
@@ -1,95 +0,0 @@
-package cz.it4i.fiji.haas_snakemake_spim.ui;
-
-import java.awt.Window;
-import java.util.function.Function;
-
-import javax.swing.WindowConstants;
-
-import org.scijava.log.LogService;
-import org.scijava.plugin.Parameter;
-
-import cz.it4i.fiji.haas.JobManager.JobInfo;
-import cz.it4i.fiji.haas.ui.FXFrame;
-import cz.it4i.fiji.haas.ui.ModalDialogs;
-import cz.it4i.fiji.haas.ui.ObservableValueAdapter;
-import cz.it4i.fiji.haas.ui.ProgressDialog;
-import javafx.application.Platform;
-import javafx.event.ActionEvent;
-import javafx.event.EventHandler;
-import javafx.fxml.FXML;
-import javafx.scene.control.ContextMenu;
-import javafx.scene.control.MenuItem;
-import javafx.scene.control.TableColumn;
-import javafx.scene.control.TableView;
-import javafx.scene.input.ContextMenuEvent;
-import net.imagej.updater.util.Progress;
-
-public class CheckStatusOfHaaSController implements FXFrame.Controller {
-
- @Parameter
- private LogService logService;
-
- @FXML
- private TableView<JobInfo> jobs;
-
- private Window root;
-
- public CheckStatusOfHaaSController() {
-
- }
-
- public void addJob(JobInfo job) {
- jobs.getItems().add(job);
- }
-
- public void init(Window root) {
- this.root = root;
- initTable();
- initMenu();
- }
-
- private void downloadData(ActionEvent event) {
- Progress progress = ModalDialogs.doModal(new ProgressDialog(root, "Downloading data"), WindowConstants.DO_NOTHING_ON_CLOSE);
- Platform.runLater(() -> jobs.getSelectionModel().getSelectedItem().downloadData(progress));
- progress.done();
- }
-
- private void initMenu() {
- ContextMenu cm = new ContextMenu();
- MenuItem download = new MenuItem("Download");
- download.setOnAction(this::downloadData);
- cm.getItems().add(download);
- jobs.setContextMenu(cm);
- jobs.setOnContextMenuRequested(new EventHandler<ContextMenuEvent>() {
-
- @Override
- public void handle(ContextMenuEvent event) {
- if (jobs.getSelectionModel().getSelectedCells().size() < 1) {
- return;
- }
- JobInfo job = jobs.getSelectionModel().getSelectedItem();
-
- if (job != null) {
- download.setDisable(false);
- } else {
- download.setDisable(true);
- }
- }
- });
- }
-
- private void initTable() {
- setCellValueFactory(0, j -> j.getId().toString());
- setCellValueFactory(1, j -> j.getState().toString());
- setCellValueFactory(2, j -> j.getCreationTime().toString());
- setCellValueFactory(3, j -> j.getStartTime().toString());
- setCellValueFactory(4, j -> j.getEndTime().toString());
- }
-
- @SuppressWarnings("unchecked")
- private void setCellValueFactory(int index, Function<JobInfo, String> mapper) {
- ((TableColumn<JobInfo, String>) jobs.getColumns().get(index))
- .setCellValueFactory(f -> new ObservableValueAdapter<JobInfo, String>(f.getValue(), mapper));
-
- }
-}
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSWindow.java b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSWindow.java
deleted file mode 100644
index 1e089cd5..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaSWindow.java
+++ /dev/null
@@ -1,40 +0,0 @@
-package cz.it4i.fiji.haas_snakemake_spim.ui;
-
-import java.awt.Frame;
-
-import org.scijava.Context;
-import org.scijava.plugin.Parameter;
-
-import cz.it4i.fiji.haas.JobManager.JobInfo;
-import cz.it4i.fiji.haas.ui.FXFrame;
-import javafx.application.Platform;
-
-public class CheckStatusOfHaaSWindow extends FXFrame<CheckStatusOfHaaSController> {
-
- private static final long serialVersionUID = 1L;
-
- @Parameter
- private Context context;
-
- public CheckStatusOfHaaSWindow(Frame applicationFrame, Context context) {
- super(applicationFrame, "/cz/it4i/fiji/haas_snakemake_spim/ui/CheckStatusOfHaaS.fxml");
- this.context = context;
- init(this::initController);
- this.setResizable(false);
- this.setTitle("Manage status of HaaS jobs");
- }
-
- public void addJob(JobInfo job) {
- Platform.runLater(new Runnable() {
- @Override
- public void run() {
- getController().addJob(job);
- }
- });
- }
-
- private void initController(CheckStatusOfHaaSController controller) {
- context.inject(controller);
- }
-
-}
diff --git a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/package-info.java b/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/package-info.java
deleted file mode 100644
index 1465d1c6..00000000
--- a/haas-snakemake-spim/src/main/java/cz/it4i/fiji/haas_snakemake_spim/ui/package-info.java
+++ /dev/null
@@ -1,8 +0,0 @@
-/**
- *
- */
-/**
- * @author koz01
- *
- */
-package cz.it4i.fiji.haas_snakemake_spim.ui;
\ No newline at end of file
diff --git a/haas-snakemake-spim/src/main/resources/.gitignore b/haas-snakemake-spim/src/main/resources/.gitignore
deleted file mode 100644
index b5285f5f..00000000
--- a/haas-snakemake-spim/src/main/resources/.gitignore
+++ /dev/null
@@ -1 +0,0 @@
-/configuration.properties
diff --git a/haas-snakemake-spim/src/main/resources/configuration.properties.template b/haas-snakemake-spim/src/main/resources/configuration.properties.template
deleted file mode 100644
index 5db03d89..00000000
--- a/haas-snakemake-spim/src/main/resources/configuration.properties.template
+++ /dev/null
@@ -1,5 +0,0 @@
-PROJECT_ID=DD-17-31
-USER_NAME=
-PASSWORD=
-EMAIL=
-PHONE=
\ No newline at end of file
--
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