diff --git a/haas-imagej-client/pom.xml b/haas-imagej-client/pom.xml
index 93bb30ca3b75300d021a081a811e593900b10d3f..c9d490c6a711dad7e375ad9350d535938d262eb7 100644
--- a/haas-imagej-client/pom.xml
+++ b/haas-imagej-client/pom.xml
@@ -1,4 +1,5 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
@@ -60,16 +61,16 @@
<properties>
<license.licenseName>${license.base.licenseName}</license.licenseName>
<license.copyrightOwners>${license.base.copyrightOwners}</license.copyrightOwners>
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
-
-
+
<dependencies>
<dependency>
<groupId>net.imagej</groupId>
<artifactId>imagej</artifactId>
<scope>provided</scope>
</dependency>
-
+
<dependency>
<groupId>cz.it4i.fiji</groupId>
<artifactId>haas-java-client</artifactId>
@@ -90,10 +91,21 @@
<!-- https://mvnrepository.com/artifact/org.yaml/snakeyaml -->
<dependency>
- <groupId>org.yaml</groupId>
- <artifactId>snakeyaml</artifactId>
- <version>1.19</version>
+ <groupId>org.yaml</groupId>
+ <artifactId>snakeyaml</artifactId>
+ <version>1.19</version>
</dependency>
-
</dependencies>
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-compiler-plugin</artifactId>
+ <configuration>
+ <source>1.8</source>
+ <target>1.8</target>
+ </configuration>
+ </plugin>
+ </plugins>
+ </build>
</project>
diff --git a/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/FutureValueUpdater.java b/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/FutureValueUpdater.java
new file mode 100644
index 0000000000000000000000000000000000000000..8400e18a0d4a33a705ccce5a89c929487d0158aa
--- /dev/null
+++ b/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/FutureValueUpdater.java
@@ -0,0 +1,32 @@
+package cz.it4i.fiji.haas.ui;
+
+import java.util.concurrent.CompletableFuture;
+import java.util.concurrent.Executor;
+
+import cz.it4i.fiji.haas.ui.TableCellAdapter.TableCellUpdater;
+import javafx.scene.control.TableCell;
+
+public class FutureValueUpdater<S, T, U extends CompletableFuture<T>> implements TableCellUpdater<S, U> {
+
+ private final TableCellUpdater<S, T> inner;
+ private final Executor executor;
+
+ public FutureValueUpdater(TableCellUpdater<S, T> inner, Executor exec) {
+ this.inner = inner;
+ this.executor = exec;
+ }
+
+ @Override
+ public void accept(TableCell<?, ?> cell, U value, boolean empty) {
+ if (value != null) {
+ if (!value.isDone()) {
+ inner.accept(cell, null, empty);
+ }
+ value.thenAcceptAsync(val -> {
+ inner.accept(cell, val, empty);
+ }, executor);
+ } else {
+ inner.accept(cell, null, empty);
+ }
+ }
+}
\ No newline at end of file
diff --git a/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/JavaFXRoutines.java b/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/JavaFXRoutines.java
index f3c67a341f10bb75bb1d652f74de0263f03487d6..bbe3f18cb8d2e7f34a8304d66428849beb915e31 100644
--- a/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/JavaFXRoutines.java
+++ b/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/JavaFXRoutines.java
@@ -2,7 +2,6 @@ package cz.it4i.fiji.haas.ui;
import java.io.IOException;
import java.util.concurrent.Callable;
-import java.util.concurrent.CompletableFuture;
import java.util.concurrent.Executor;
import java.util.function.Consumer;
import java.util.function.Function;
@@ -11,11 +10,9 @@ import java.util.function.Predicate;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
-import cz.it4i.fiji.haas.ui.JavaFXRoutines.TableCellAdapter.TableCellUpdater;
import javafx.application.Platform;
import javafx.beans.value.ObservableValue;
import javafx.fxml.FXMLLoader;
-import javafx.scene.control.TableCell;
import javafx.scene.control.TableColumn;
import javafx.scene.control.TableView;
@@ -23,63 +20,6 @@ public interface JavaFXRoutines {
Logger log = LoggerFactory.getLogger(cz.it4i.fiji.haas.ui.CloseableControl.class);
- static public class TableCellAdapter<S, T> extends TableCell<S, T> {
- public interface TableCellUpdater<A, B> {
- void accept(TableCell<?, ?> cell, B value, boolean empty);
- }
-
- private final TableCellUpdater<S, T> updater;
-
- public TableCellAdapter(TableCellUpdater<S, T> updater) {
- this.updater = updater;
- }
-
- @Override
- protected void updateItem(T item, boolean empty) {
- if(empty) {
- this.setText("");
- } else {
- updater.accept(this, item, empty);
- }
- }
- }
-
- static public class FutureValueUpdater<S, T, U extends CompletableFuture<T>> implements TableCellUpdater<S, U> {
-
- private final TableCellUpdater<S, T> inner;
- private final Executor executor;
-
- public FutureValueUpdater(TableCellUpdater<S, T> inner, Executor exec) {
- this.inner = inner;
- this.executor = exec;
- }
-
- @Override
- public void accept(TableCell<?, ?> cell, U value, boolean empty) {
- if (value != null) {
- if (!value.isDone()) {
- inner.accept(cell, null, empty);
- }
- value.thenAcceptAsync(val -> {
- inner.accept(cell, val, empty);
- }, executor);
- } else {
- inner.accept(cell, null, empty);
- }
- }
- }
-
- static public class StringValueUpdater<S> implements TableCellUpdater<S, String> {
- @Override
- public void accept(TableCell<?, ?> cell, String value, boolean empty) {
- if (value != null) {
- cell.setText(value);
- } else if (!empty) {
- cell.setText("N/A");
- }
- }
- }
-
static void initRootAndController(String string, Object parent) {
initRootAndController(string, parent, false);
}
diff --git a/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/StringValueUpdater.java b/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/StringValueUpdater.java
new file mode 100644
index 0000000000000000000000000000000000000000..337e5c298bc9117289f1eae91654814d6b39e856
--- /dev/null
+++ b/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/StringValueUpdater.java
@@ -0,0 +1,15 @@
+package cz.it4i.fiji.haas.ui;
+
+import cz.it4i.fiji.haas.ui.TableCellAdapter.TableCellUpdater;
+import javafx.scene.control.TableCell;
+
+public class StringValueUpdater<S> implements TableCellUpdater<S, String> {
+ @Override
+ public void accept(TableCell<?, ?> cell, String value, boolean empty) {
+ if (value != null) {
+ cell.setText(value);
+ } else if (!empty) {
+ cell.setText("N/A");
+ }
+ }
+}
\ No newline at end of file
diff --git a/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/TableCellAdapter.java b/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/TableCellAdapter.java
new file mode 100644
index 0000000000000000000000000000000000000000..c623bcec425a5215687f1d0a838129e4297cd46a
--- /dev/null
+++ b/haas-imagej-client/src/main/java/cz/it4i/fiji/haas/ui/TableCellAdapter.java
@@ -0,0 +1,24 @@
+package cz.it4i.fiji.haas.ui;
+
+import javafx.scene.control.TableCell;
+
+public class TableCellAdapter<S, T> extends TableCell<S, T> {
+ public interface TableCellUpdater<A, B> {
+ void accept(TableCell<?, ?> cell, B value, boolean empty);
+ }
+
+ private final TableCellAdapter.TableCellUpdater<S, T> updater;
+
+ public TableCellAdapter(TableCellAdapter.TableCellUpdater<S, T> updater) {
+ this.updater = updater;
+ }
+
+ @Override
+ protected void updateItem(T item, boolean empty) {
+ if(empty) {
+ this.setText("");
+ } else {
+ updater.accept(this, item, empty);
+ }
+ }
+}
\ No newline at end of file
diff --git a/haas-java-client/pom.xml b/haas-java-client/pom.xml
index f70f208e5052dded8f199dc8fd9dd4bd1e8691e2..4f94653735038043b94181ce3a1e673bf949d3cf 100644
--- a/haas-java-client/pom.xml
+++ b/haas-java-client/pom.xml
@@ -6,6 +6,9 @@
<version>0.0.2-SNAPSHOT</version>
<name>HaaS library for Java</name>
<packaging>jar</packaging>
+ <properties>
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+ </properties>
<build>
<plugins>
<plugin>
@@ -19,6 +22,7 @@
</plugin>
<plugin>
<artifactId>maven-source-plugin</artifactId>
+ <version>3.0.1</version>
<executions>
<execution>
<id>attach-sources</id>
@@ -42,8 +46,7 @@
<artifactId>java-scpclient</artifactId>
<version>0.0.1-SNAPSHOT</version>
</dependency>
- <!-- https://mvnrepository.com/artifact/org.apache.axis2/axis2 -->
-
+
<!-- https://mvnrepository.com/artifact/javax.activation/activation -->
<dependency>
<groupId>javax.activation</groupId>
@@ -74,8 +77,6 @@
<artifactId>jaxrpc</artifactId>
<version>1.1</version>
</dependency>
- <!-- https://mvnrepository.com/artifact/javax.xml/saaj-api -->
- <!-- https://mvnrepository.com/artifact/javax.xml/saaj-api -->
<!-- https://mvnrepository.com/artifact/javax.xml.soap/saaj-api -->
<dependency>
<groupId>javax.xml.soap</groupId>
diff --git a/haas-java-client/src/main/resources/configuration.properties.template b/haas-java-client/src/test/resources/configuration.properties.template
similarity index 100%
rename from haas-java-client/src/main/resources/configuration.properties.template
rename to haas-java-client/src/test/resources/configuration.properties.template
diff --git a/haas-spim-benchmark/pom.xml b/haas-spim-benchmark/pom.xml
index 10057406c4c5b478647fc61aae0ee12efb56925d..fbd071531b78603705f442d64149771d448d44af 100644
--- a/haas-spim-benchmark/pom.xml
+++ b/haas-spim-benchmark/pom.xml
@@ -1,4 +1,5 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
@@ -59,13 +60,14 @@
<system>None</system>
</ciManagement>
-
+
<properties>
<license.licenseName>${license.base.licenseName}</license.licenseName>
<license.copyrightOwners>${license.base.copyrightOwners}</license.copyrightOwners>
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
-
+
<dependencies>
<dependency>
<groupId>net.imagej</groupId>
@@ -78,14 +80,14 @@
<artifactId>haas-imagej-client</artifactId>
<version>0.0.1-SNAPSHOT</version>
</dependency>
-
+
<!-- https://mvnrepository.com/artifact/commons-io/commons-io -->
<dependency>
- <groupId>commons-io</groupId>
- <artifactId>commons-io</artifactId>
- <version>2.6</version>
+ <groupId>commons-io</groupId>
+ <artifactId>commons-io</artifactId>
+ <version>2.6</version>
</dependency>
-
+
<!-- https://mvnrepository.com/artifact/org.slf4j/slf4j-api -->
<dependency>
<groupId>org.slf4j</groupId>
@@ -103,21 +105,13 @@
<build>
<plugins>
<plugin>
- <artifactId>maven-assembly-plugin</artifactId>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-dependency-plugin</artifactId>
<configuration>
- <descriptorRefs>
- <descriptorRef>jar-with-dependencies</descriptorRef>
- </descriptorRefs>
+ <outputDirectory>
+ ${project.build.directory}/jars
+ </outputDirectory>
</configuration>
- <executions>
- <execution>
- <id>make-assembly</id>
- <phase>package</phase>
- <goals>
- <goal>single</goal>
- </goals>
- </execution>
- </executions>
</plugin>
</plugins>
diff --git a/haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/ui/BenchmarkSPIMControl.java b/haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/ui/BenchmarkSPIMControl.java
index dbe847aacfcf1f0d2ab39b11ceb38bae18154b46..07db5b7d40e84c853e315334b747d55b24d96508 100644
--- a/haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/ui/BenchmarkSPIMControl.java
+++ b/haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/ui/BenchmarkSPIMControl.java
@@ -28,11 +28,14 @@ import org.slf4j.LoggerFactory;
import cz.it4i.fiji.haas.UploadingFileFromResource;
import cz.it4i.fiji.haas.ui.CloseableControl;
import cz.it4i.fiji.haas.ui.DummyProgress;
+import cz.it4i.fiji.haas.ui.FutureValueUpdater;
import cz.it4i.fiji.haas.ui.InitiableControl;
import cz.it4i.fiji.haas.ui.JavaFXRoutines;
import cz.it4i.fiji.haas.ui.ModalDialogs;
import cz.it4i.fiji.haas.ui.ProgressDialog;
import cz.it4i.fiji.haas.ui.ShellRoutines;
+import cz.it4i.fiji.haas.ui.StringValueUpdater;
+import cz.it4i.fiji.haas.ui.TableCellAdapter;
import cz.it4i.fiji.haas.ui.TableViewContextMenu;
import cz.it4i.fiji.haas_java_client.JobState;
import cz.it4i.fiji.haas_java_client.UploadingFile;
@@ -323,9 +326,9 @@ public class BenchmarkSPIMControl extends BorderPane implements CloseableControl
private void setCellValueFactoryCompletable(int index, Function<BenchmarkJob, CompletableFuture<String>> mapper) {
JavaFXRoutines.setCellValueFactory(jobs, index, mapper);
((TableColumn<ObservableBenchmarkJob, CompletableFuture<String>>) jobs.getColumns().get(index)).setCellFactory(
- column -> new JavaFXRoutines.TableCellAdapter<ObservableBenchmarkJob, CompletableFuture<String>>(
- new JavaFXRoutines.FutureValueUpdater<ObservableBenchmarkJob, String, CompletableFuture<String>>(
- new JavaFXRoutines.StringValueUpdater<ObservableBenchmarkJob>(), executorServiceFX)));
+ column -> new TableCellAdapter<ObservableBenchmarkJob, CompletableFuture<String>>(
+ new FutureValueUpdater<ObservableBenchmarkJob, String, CompletableFuture<String>>(
+ new StringValueUpdater<ObservableBenchmarkJob>(), executorServiceFX)));
}
private interface P_JobAction {
diff --git a/haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/ui/SPIMPipelineProgressViewController.java b/haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/ui/SPIMPipelineProgressViewController.java
index 3580264fec1e5654b0b1c2389904f0f614d7f6b7..1a74b7a85a29e83d29b4916d03ba7b2e205dad15 100644
--- a/haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/ui/SPIMPipelineProgressViewController.java
+++ b/haas-spim-benchmark/src/main/java/cz/it4i/fiji/haas_spim_benchmark/ui/SPIMPipelineProgressViewController.java
@@ -23,6 +23,7 @@ import cz.it4i.fiji.haas.ui.CloseableControl;
import cz.it4i.fiji.haas.ui.InitiableControl;
import cz.it4i.fiji.haas.ui.JavaFXRoutines;
import cz.it4i.fiji.haas.ui.ModalDialogs;
+import cz.it4i.fiji.haas.ui.TableCellAdapter;
import cz.it4i.fiji.haas.ui.TableViewContextMenu;
import cz.it4i.fiji.haas_java_client.JobState;
import cz.it4i.fiji.haas_spim_benchmark.core.BenchmarkJobManager.BenchmarkJob;
@@ -208,7 +209,7 @@ public class SPIMPipelineProgressViewController extends BorderPane implements Cl
}
});
((TableColumn<ObservableValue<Task>, TaskComputation>) this.tasks.getColumns().get(index))
- .setCellFactory(column -> new JavaFXRoutines.TableCellAdapter<>((cell, val, empty) -> {
+ .setCellFactory(column -> new TableCellAdapter<>((cell, val, empty) -> {
if (val == null || empty) {
cell.setText(EMPTY_VALUE);
cell.setStyle("");
diff --git a/haas-spim-benchmark/src/main/resources/configuration.properties.template b/haas-spim-benchmark/src/main/resources/configuration.properties.template
deleted file mode 100644
index 892ed0d0a691608a7070d5beb4c3c8e539c074ef..0000000000000000000000000000000000000000
--- a/haas-spim-benchmark/src/main/resources/configuration.properties.template
+++ /dev/null
@@ -1,4 +0,0 @@
-USER_NAME=
-PASSWORD=
-EMAIL=
-PHONE=
\ No newline at end of file
diff --git a/java-scpclient/pom.xml b/java-scpclient/pom.xml
index c4722b7ff67363cae337880fa9b54675f13cbddc..6028d1717e498460f60c2e409a876fb269a8ade8 100644
--- a/java-scpclient/pom.xml
+++ b/java-scpclient/pom.xml
@@ -7,6 +7,9 @@
<version>0.0.1-SNAPSHOT</version>
<name>Scp client library for Java</name>
<packaging>jar</packaging>
+ <properties>
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+ </properties>
<build>
<plugins>
<plugin>