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fix: iss1137

Closed Jan Kožusznik requested to merge iss1137 into snakemakeProcessor
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@@ -64,17 +64,16 @@ class SnakemakeOutputHelper {
final String OUTPUT_PARSING_VALUE_ERROR = "ValueError";
processedOutputLength = -1;
int readJobCountIndex = -1;
boolean found = false;
final String output = getSnakemakeOutput();
// Found last job count definition
Pattern p = Pattern.compile(OUTPUT_PARSING_JOB_COUNTS + "|" + NOTHING_TO_BE_DONE);
Matcher m = p.matcher(output);
final Pattern p = Pattern.compile(OUTPUT_PARSING_JOB_COUNTS + "|" +
NOTHING_TO_BE_DONE);
final Matcher m = p.matcher(output);
while (m.find()) {
readJobCountIndex = m.start();
processedOutputLength = m.start();
found = true;
processedOutputLength = readJobCountIndex;
}
// If no job count definition has been found, search through the output and
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