From 1ffe1e56f52e66676a08fe74d90cd16c164d757f Mon Sep 17 00:00:00 2001
From: Peter Steinbach <steinbach@scionics.de>
Date: Thu, 4 Jun 2015 14:00:07 +0200
Subject: [PATCH] fixed wrong indexing in define_xml_tif
---
spim_registration/timelapse/Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/spim_registration/timelapse/Snakefile b/spim_registration/timelapse/Snakefile
index 1cb115d..628a367 100644
--- a/spim_registration/timelapse/Snakefile
+++ b/spim_registration/timelapse/Snakefile
@@ -85,7 +85,7 @@ rule define_xml_tif:
config["define_xml_tif"],
jdir=JOBDIR,
path_bsh=config["common"]["bsh_directory"] + config["define_xml_tif"]["bsh_file"],
- timepoints="1-"+str(config["common"]["ntimepoints"])
+ timepoints="0-"+str(int(config["common"]["ntimepoints"])-1)
)
cmd_string +=" > {log} 2>&1"
--
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