diff --git a/spim_registration/timelapse/Snakefile b/spim_registration/timelapse/Snakefile index 9cea6eaea6f682cc2351f9c415e4a11b91d9c9dd..c6564b7031af8985f0f209e5854cebe0bad56b5a 100755 --- a/spim_registration/timelapse/Snakefile +++ b/spim_registration/timelapse/Snakefile @@ -7,13 +7,13 @@ if JOBDIR[-1] != "/": # this checks if jobdir ends with slash if not it adds a s JOBDIR+="/" # Test config file single Channel: -configfile: "single_test.yaml" +# configfile: "single_test.yaml" # Test config file dual channel one channel contains beads: # configfile: "dual_OneChannel.yaml" # data specific config file, expected to be inside JOBDIR -# configfile: "tomancak_test_cluster.yaml" +configfile: "*.yaml" padding_format = "{0:0"+str(padding_of_file_id(int(config["common"]["ntimepoints"])))+"d}" ds_format = "-"+padding_format+"-00.h5"