diff --git a/spim_registration/timelapse/registration.bsh b/spim_registration/timelapse/registration.bsh index f7c6b26bb1edb96765c2da801b2c3f42da75e7e6..849808589f1891bbadc20f0f08f98454e90a5b8f 100644 --- a/spim_registration/timelapse/registration.bsh +++ b/spim_registration/timelapse/registration.bsh @@ -24,6 +24,7 @@ System.out.println( "-------------------------------------------------------" ); System.out.println( "General parameters: " ); parallel_timepoints = Integer.parseInt(System.getProperty( "parallel_timepoints" )); +unique_id = System.getProperty( "parallel_timepoints" ); process_timepoint = System.getProperty( "process_timepoint" ); process_channel = System.getProperty( "process_channel" ); process_illumination = System.getProperty( "process_illumination" ); @@ -120,7 +121,7 @@ System.out.println( "Starting Detection of Interest Points" ); try { IJ.run("Detect Interest Points for Registration", "select_xml=" + xml_path + xml_filename + ".xml " + - "unique_id=" + parallel_timepoints + " " + + "unique_id=" + unique_id + " " + "process_angle=[" + process_angle + "] " + "process_channel=[" + process_channel + "] " + "process_illumination=[" + process_illumination + "] " + @@ -151,7 +152,7 @@ System.out.println( "Starting Registration" ); try { IJ.run("Register Dataset based on Interest Points", - "select_xml=" + xml_path + xml_filename + ".job_" + parallel_timepoints + ".xml " + + "select_xml=" + xml_path + xml_filename + ".job_" + unique_id + ".xml " + "process_angle=[" + process_angle + "] " + "process_channel=[" + process_channel + "] " + "process_illumination=[" + process_illumination + "] " +