From 408a582cf8052bc0f7966c5d11f5af3c6844ae64 Mon Sep 17 00:00:00 2001
From: Peter Steinbach <steinbach@scionics.de>
Date: Thu, 28 May 2015 22:53:36 +0200
Subject: [PATCH] added new variable to separate file id and timepoint number
---
spim_registration/timelapse/registration.bsh | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/spim_registration/timelapse/registration.bsh b/spim_registration/timelapse/registration.bsh
index f7c6b26..8498085 100644
--- a/spim_registration/timelapse/registration.bsh
+++ b/spim_registration/timelapse/registration.bsh
@@ -24,6 +24,7 @@ System.out.println( "-------------------------------------------------------" );
System.out.println( "General parameters: " );
parallel_timepoints = Integer.parseInt(System.getProperty( "parallel_timepoints" ));
+unique_id = System.getProperty( "parallel_timepoints" );
process_timepoint = System.getProperty( "process_timepoint" );
process_channel = System.getProperty( "process_channel" );
process_illumination = System.getProperty( "process_illumination" );
@@ -120,7 +121,7 @@ System.out.println( "Starting Detection of Interest Points" );
try {
IJ.run("Detect Interest Points for Registration",
"select_xml=" + xml_path + xml_filename + ".xml " +
- "unique_id=" + parallel_timepoints + " " +
+ "unique_id=" + unique_id + " " +
"process_angle=[" + process_angle + "] " +
"process_channel=[" + process_channel + "] " +
"process_illumination=[" + process_illumination + "] " +
@@ -151,7 +152,7 @@ System.out.println( "Starting Registration" );
try {
IJ.run("Register Dataset based on Interest Points",
- "select_xml=" + xml_path + xml_filename + ".job_" + parallel_timepoints + ".xml " +
+ "select_xml=" + xml_path + xml_filename + ".job_" + unique_id + ".xml " +
"process_angle=[" + process_angle + "] " +
"process_channel=[" + process_channel + "] " +
"process_illumination=[" + process_illumination + "] " +
--
GitLab