diff --git a/spim_registration/timelapse/Snakefile b/spim_registration/timelapse/Snakefile index c150fd4da4729c383849fd336816127e133ad833..4af3d9035bb03b9322d456dc7b2d77de45bf7484 100755 --- a/spim_registration/timelapse/Snakefile +++ b/spim_registration/timelapse/Snakefile @@ -445,7 +445,7 @@ rule define_output: # create mother .xml/.h5 rule hdf5_xml_output: input: config["common"]["output_xml"].strip('\"') + ".xml" - output: expand("{dataset}.{suffix}",dataset=[ config["common"]["hdf5_xml_filename"].strip('\"')], suffix=["xml","h5"]), + output: expand("{dataset}.{suffix}",dataset=[ config["common"]["output_hdf5_xml"].strip('\"')], suffix=["xml","h5"]), [ item+"_output" for item in datasets ] log: "logs/f2_output_hdf5_xml.log" run: