From 7145dd2241f4866b6a6b58c99a6272f96b17f371 Mon Sep 17 00:00:00 2001
From: Christopher Schmied <schmied@mpi-cbg.de>
Date: Sun, 5 Jul 2015 19:39:18 +0200
Subject: [PATCH] Fixed bug in Snakefile in hdf5_xml_output rule
the output rule now references to the correct xml filename
---
spim_registration/timelapse/Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/spim_registration/timelapse/Snakefile b/spim_registration/timelapse/Snakefile
index c150fd4..4af3d90 100755
--- a/spim_registration/timelapse/Snakefile
+++ b/spim_registration/timelapse/Snakefile
@@ -445,7 +445,7 @@ rule define_output:
# create mother .xml/.h5
rule hdf5_xml_output:
input: config["common"]["output_xml"].strip('\"') + ".xml"
- output: expand("{dataset}.{suffix}",dataset=[ config["common"]["hdf5_xml_filename"].strip('\"')], suffix=["xml","h5"]),
+ output: expand("{dataset}.{suffix}",dataset=[ config["common"]["output_hdf5_xml"].strip('\"')], suffix=["xml","h5"]),
[ item+"_output" for item in datasets ]
log: "logs/f2_output_hdf5_xml.log"
run:
--
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