diff --git a/spim_registration/timelapse/Snakefile b/spim_registration/timelapse/Snakefile index ed86f6f3145e5ed49842edea5725bc63d4eae907..408f7ea4c34898fadc4172df36fccb11a2c873a3 100644 --- a/spim_registration/timelapse/Snakefile +++ b/spim_registration/timelapse/Snakefile @@ -406,7 +406,7 @@ rule define_output: rule hdf5_xml_output: input: config["hdf5_output"]["output_xml"].strip('\"') + ".xml" output: expand("{dataset}.{suffix}",dataset=[ config["common"]["hdf5_xml_filename"].strip('\"')], suffix=["xml","h5"]), - [ item+"_output" for item in datasets ] # expand("{dataset}.{suffix}",dataset=[ config["hdf5_output"]["output_hdf5_xml"].strip('\"')], suffix=["xml","h5"]), "{xml_base}-{file_id,\d+}-00.h5_output_hdf5_xml" + [ item+"_output" for item in datasets ] log: "hdf5_xml.log" run: part_string = produce_string( @@ -469,7 +469,7 @@ rule resave_hdf5_output: rule distclean: - params : glob.glob(config["common"]["hdf5_xml_filename"].strip('\"')+"*"), glob.glob(config["common"]["first_xml_filename"].strip('\"')+"*"), glob.glob("*registered"), glob.glob("*_fusion"), glob.glob("*_timelapse"), glob.glob("*log"), glob.glob("*_deconvolved"), glob.glob("*.xml~*"),"interestpoints", glob.glob("*empty"), expand("{dataset}.{suffix}",dataset=[ config["common"]["hdf5_xml_filename"].strip('\"')], suffix=["xml","h5"])# xml_merge_in, + params : glob.glob(config["common"]["hdf5_xml_filename"].strip('\"')+"*"), glob.glob(config["common"]["first_xml_filename"].strip('\"')+"*"), glob.glob("*registered"), glob.glob("*_fusion"), glob.glob("*_timelapse"), glob.glob("*log"), glob.glob("*_deconvolved"), glob.glob("*.xml~*"),"interestpoints", glob.glob("*empty"), expand("{dataset}.{suffix}",dataset=[ config["common"]["hdf5_xml_filename"].strip('\"')], suffix=["xml","h5"]), glob.glob("*_output_hdf5"), glob.glob("*_output")# xml_merge_in, message : os.path.abspath(os.path.curdir) + ": rm -rf {params}" shell : "rm -rf {params}"