diff --git a/spim_registration/timelapse/fusion.bsh b/spim_registration/timelapse/fusion.bsh index 79f9d54911da2bef0b7b3f57e4d64ce62dbdf6d7..945556cf0c05b6e5cec8419eb89815cc3b504338 100755 --- a/spim_registration/timelapse/fusion.bsh +++ b/spim_registration/timelapse/fusion.bsh @@ -98,8 +98,8 @@ IJ.run("Fuse/Deconvolve Dataset", "imglib2_container=" + imglib2_container_fusion + " " + "process_views_in_paralell=All " + "interpolation=[" + interpolation + "] " + - //"blend " + - //"content-based " + + "blend " + + "content-based " + "output_file_directory=" + image_file_directory + " " + "lossless " + "imglib2_data_container=[" + imglib2_data_container + "]"); diff --git a/spim_registration/timelapse/tomancak_test_cluster.yaml b/spim_registration/timelapse/tomancak_test_cluster.yaml index eb20c7161a008f36332d020526b3646a7a1251b3..84c42f55c8998a77e4113a35bc62b4f52be471e7 100755 --- a/spim_registration/timelapse/tomancak_test_cluster.yaml +++ b/spim_registration/timelapse/tomancak_test_cluster.yaml @@ -166,7 +166,7 @@ hdf5_output: { output_image_file_pattern: 'TP{{t}}_Ch{{c}}_Ill0_Ang0,72,144,216,288.tif', output_xml: '"fused_Dual_Channel"', output_hdf5_xml: '"hdf5_fused_Dual_Channel"', - output_multiple_channels: '"NO (one channel)"', + output_multiple_channels: '"YES (one file per channel)"', # "\"YES (one file per channel)\"" or "\"NO (one channel)\"" output_timepoints: '0-1', output_pixel_distance_x: 0.28590, output_pixel_distance_y: 0.28590,