From dd25499a3ce5954fd18f6e5465d3f64b64a27b22 Mon Sep 17 00:00:00 2001
From: Christopher Schmied <schmied@mpi-cbg.de>
Date: Thu, 11 Jun 2015 22:51:51 +0200
Subject: [PATCH] Tested Dual Channel Processing 1 channel contains beads
---
spim_registration/timelapse/fusion.bsh | 4 ++--
spim_registration/timelapse/tomancak_test_cluster.yaml | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/spim_registration/timelapse/fusion.bsh b/spim_registration/timelapse/fusion.bsh
index 79f9d54..945556c 100755
--- a/spim_registration/timelapse/fusion.bsh
+++ b/spim_registration/timelapse/fusion.bsh
@@ -98,8 +98,8 @@ IJ.run("Fuse/Deconvolve Dataset",
"imglib2_container=" + imglib2_container_fusion + " " +
"process_views_in_paralell=All " +
"interpolation=[" + interpolation + "] " +
- //"blend " +
- //"content-based " +
+ "blend " +
+ "content-based " +
"output_file_directory=" + image_file_directory + " " +
"lossless " +
"imglib2_data_container=[" + imglib2_data_container + "]");
diff --git a/spim_registration/timelapse/tomancak_test_cluster.yaml b/spim_registration/timelapse/tomancak_test_cluster.yaml
index eb20c71..84c42f5 100755
--- a/spim_registration/timelapse/tomancak_test_cluster.yaml
+++ b/spim_registration/timelapse/tomancak_test_cluster.yaml
@@ -166,7 +166,7 @@ hdf5_output: {
output_image_file_pattern: 'TP{{t}}_Ch{{c}}_Ill0_Ang0,72,144,216,288.tif',
output_xml: '"fused_Dual_Channel"',
output_hdf5_xml: '"hdf5_fused_Dual_Channel"',
- output_multiple_channels: '"NO (one channel)"',
+ output_multiple_channels: '"YES (one file per channel)"', # "\"YES (one file per channel)\"" or "\"NO (one channel)\""
output_timepoints: '0-1',
output_pixel_distance_x: 0.28590,
output_pixel_distance_y: 0.28590,
--
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