From decfbe469cb1fe078827d7f0f22957f9611326ee Mon Sep 17 00:00:00 2001
From: Peter Steinbach <steinbach@scionics.de>
Date: Tue, 7 Jul 2015 17:00:42 +0200
Subject: [PATCH] added onsuccess and onerror statements as comments
---
spim_registration/timelapse/Snakefile | 12 ++++++++++--
1 file changed, 10 insertions(+), 2 deletions(-)
diff --git a/spim_registration/timelapse/Snakefile b/spim_registration/timelapse/Snakefile
index e62a316..1fcde85 100644
--- a/spim_registration/timelapse/Snakefile
+++ b/spim_registration/timelapse/Snakefile
@@ -8,6 +8,7 @@ if JOBDIR[-1] != "/": # this checks if jobdir ends with slash if not it adds a s
# Test config file single Channel:
configfile: "single_test.yaml"
+
# Test config file dual channel one channel contains beads:
# configfile: "dual_OneChannel.yaml"
@@ -24,8 +25,7 @@ xml_merge_in = produce_xml_merge_job_files(datasets)
rule done:
input: [ ds + "_output_hdf5" for ds in datasets ]
- #input: [ ds + "_fusion" for ds in datasets ]
-
+
localrules: define_xml_czi, define_xml_tif, hdf5_xml, xml_merge, timelapse,
duplicate_transformations, external_transform, define_output,
hdf5_xml_output
@@ -514,3 +514,11 @@ rule distclean:
message : os.path.abspath(os.path.curdir) + ": rm -rf {params}"
shell : "rm -rf {params}"
+
+
+# NOTE! The following enables mailing, which will send out a mail once an entire workflow is done (the below does not include anything in the message body, redirect from /dev/null)
+# onsuccess:
+# shell("mail -s \"[SUCCESS] our_cluster:{jdir} finished \" xxx@mpi-cbg.de < /dev/null".format(jdir=JOBDIR))
+
+# onerror:
+# shell("mail -s \"[ERROR] out_cluster:{jdir}\" xxx@mpi-cbg.de < /dev/null".format(jdir=JOBDIR))
--
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