mkdocs.yml 13.7 KB
Newer Older
Lukáš Krupčík's avatar
Lukáš Krupčík committed
1
site_name: Documentation
Lukáš Krupčík's avatar
Lukáš Krupčík committed
2
theme_dir: 'it4i_theme'
Lukáš Krupčík's avatar
Lukáš Krupčík committed
3
extra_css: [css/extra.css]
Lukáš Krupčík's avatar
Lukáš Krupčík committed
4
docs_dir: docs.it4i
Lukáš Krupčík's avatar
Lukáš Krupčík committed
5
6
7

# Copyright
copyright: Copyright (c) 2016 IT4Innovations
8

Lukáš Krupčík's avatar
Lukáš Krupčík committed
9
pages:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
10
  - Home: index.md
Lukáš Krupčík's avatar
vagrant    
Lukáš Krupčík committed
11
  - What's News: new.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
12
  - History of Downtimes: downtimes_history.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
13
14
15
16
17
18
19
20
21
22
23
24
25
26
  - Get Started with IT4Innovations:
    - Applying for Resources: get-started-with-it4innovations/applying-for-resources.md
  - Get Started with IT4Innovations-Obtaining Login Credentials: 
    - Obtaining Login Credentials: get-started-with-it4innovations/obtaining-login-credentials/obtaining-login-credentials.md
    - Certificates FAQ: get-started-with-it4innovations/obtaining-login-credentials/certificates-faq.md
  - Get Started with IT4Innovations-Accessing the Clusters:
    - Accessing the Clusters: get-started-with-it4innovations/accessing-the-clusters/introduction.md
  - Get Started with IT4Innovations-Accessing the Clusters-Shell access and data transfer:
    - VPN-Connection-Fail-in-Win-8.1: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/vpn-connection-fail-in-win-8.1.md
    - SSH keys: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.md
    - Pageant SSH agent: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/pageant.md
    - PuTTY key generator: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/puttygen.md
    - PuTTY: get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty.md
  - Get Started with IT4Innovations-Accessing the Clusters-Graphical User Interface:
27
    - Introduction: get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/graphical-user-interface.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
28
29
30
    - X Window System: get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system.md
    - VNC: get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc.md
    - Cygwin and x11 Forwarding: get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/cygwin-and-x11-forwarding.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
31
32
33
34
35
36
37
38
  - Anselm Cluster Documentation:
    - Introduction: anselm-cluster-documentation/introduction.md
    - Hardware Overview: anselm-cluster-documentation/hardware-overview.md
    - Environment and Modules: anselm-cluster-documentation/environment-and-modules.md
    - Compute Nodes: anselm-cluster-documentation/compute-nodes.md
    - Remote visualization: anselm-cluster-documentation/remote-visualization.md
    - Network: anselm-cluster-documentation/network.md
    - PRACE User Support: anselm-cluster-documentation/prace.md
39
40
41
42
  - Anselm Cluster Documentation-Accessing the Cluster:
    - Outgoing Connections: anselm-cluster-documentation/accessing-the-cluster/outgoing-connections.md
    - VPN Access: anselm-cluster-documentation/accessing-the-cluster/vpn-access.md
    - Shell and Data Access: anselm-cluster-documentation/accessing-the-cluster/shell-and-data-access.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
  - Anselm Cluster Documentation-Resource Allocation and Job Execution:
    - Introduction: anselm-cluster-documentation/resource-allocation-and-job-execution/introduction.md
    - Job Priority: anselm-cluster-documentation/resource-allocation-and-job-execution/job-priority.md
    - Job Submission and Execution: anselm-cluster-documentation/resource-allocation-and-job-execution/job-submission-and-execution.md
    - Capacity computing: anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing.md
    - Resource allocation policy: anselm-cluster-documentation/resource-allocation-and-job-execution/resources-allocation-policy.md
  - Anselm Cluster Documentation-Storage:
    - Cesnet Data Storage: anselm-cluster-documentation/storage/cesnet-data-storage.md
    - Storage: anselm-cluster-documentation/storage/storage.md
  - Anselm Cluster Documentation-Software:
    - COMSOL: anselm-cluster-documentation/software/comsol-multiphysics.md
    - ParaView: anselm-cluster-documentation/software/paraview.md
    - Compilers: anselm-cluster-documentation/software/compilers.md
    - nVidia CUDA: anselm-cluster-documentation/software/nvidia-cuda.md
    - GPI-2: anselm-cluster-documentation/software/gpi2.md
    - OpenFOAM: anselm-cluster-documentation/software/openfoam.md
    - ISV Licenses: anselm-cluster-documentation/software/isv_licenses.md
    - Intel Xeon Phi: anselm-cluster-documentation/software/intel-xeon-phi.md
    - Virtualization: anselm-cluster-documentation/software/kvirtualization.md
    - Java: anselm-cluster-documentation/software/java.md
    - Operating System: anselm-cluster-documentation/software/operating-system.md
  - Anselm Cluster Documentation-Software-Intel Suite:
    - Introduction: anselm-cluster-documentation/software/intel-suite/introduction.md
    - Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md
    - Intel Compilers: anselm-cluster-documentation/software/intel-suite/intel-compilers.md
    - Intel IPP: anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md
    - Intel TBB: anselm-cluster-documentation/software/intel-suite/intel-tbb.md
    - Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md
  - Anselm Cluster Documentation-Software-MPI:
    - Introduction: anselm-cluster-documentation/software/mpi/mpi.md
    - MPI4Py (MPI for Python): anselm-cluster-documentation/software/mpi/mpi4py-mpi-for-python.md
    - Running OpenMPI: anselm-cluster-documentation/software/mpi/Running_OpenMPI.md
    - Running MPICH2: anselm-cluster-documentation/software/mpi/running-mpich2.md
  - Anselm Cluster Documentation-Software-Numerical Libraries:
    - Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md
    - PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md
    - Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md
    - FFTW: anselm-cluster-documentation/software/numerical-libraries/fftw.md
    - GSL: anselm-cluster-documentation/software/numerical-libraries/gsl.md
    - MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
    - HDF5: anselm-cluster-documentation/software/numerical-libraries/hdf5.md
  - Anselm Cluster Documentation-Software-Omics Master:
    - Diagnostic component (TEAM): anselm-cluster-documentation/software/omics-master/diagnostic-component-team.md
    - Priorization component (BiERApp): anselm-cluster-documentation/software/omics-master/priorization-component-bierapp.md
    - Overview: anselm-cluster-documentation/software/omics-master/overview.md
  - Anselm Cluster Documentation-Software-Debuggers:
    - Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md
    - PAPI: anselm-cluster-documentation/software/debuggers/papi.md
    - Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md
    - Total View: anselm-cluster-documentation/software/debuggers/total-view.md
    - CUBE: anselm-cluster-documentation/software/debuggers/cube.md
    - Intel VTune Amplifier: anselm-cluster-documentation/software/debuggers/intel-vtune-amplifier.md
    - VNC: anselm-cluster-documentation/software/debuggers/debuggers.md
    - Scalasca: anselm-cluster-documentation/software/debuggers/scalasca.md
    - Score-P: anselm-cluster-documentation/software/debuggers/score-p.md
    - Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
    - Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md
    - Vampir: anselm-cluster-documentation/software/debuggers/vampir.md
  - Anselm Cluster Documentation-Software-Numerical Languages:
    - Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md
    - R: anselm-cluster-documentation/software/numerical-languages/r.md
    - Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab 2013-2014.md
    - Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md
    - Octave: anselm-cluster-documentation/software/numerical-languages/octave.md
  - Anselm Cluster Documentation-Software-Chemistry:
    - Molpro: anselm-cluster-documentation/software/chemistry/molpro.md
    - NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md
  - Anselm Cluster Documentation-Software-Ansys:
    - Introduction: anselm-cluster-documentation/software/ansys/ansys.md
    - ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md
    - ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md
    - ANSYS MAPDL: anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md
    - LS-DYNA: anselm-cluster-documentation/software/ansys/ls-dyna.md
    - ANSYS Fluent: anselm-cluster-documentation/software/ansys/ansys-fluent.md
  - Salomon Cluster Documentation:
    - Introduction: salomon/introduction.md
    - PRACE User Support: salomon/prace.md
    - Environment and Modules: salomon/environment-and-modules.md
    - Hardware Overview: salomon/hardware-overview.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
122
    - Compute Nodes: salomon/compute-nodes.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
123
    - List of modules: salomon/list_of_modules.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
124
125
126
127
  - Salomon Cluster Documentation-Accessing the Cluster:
    - Outgoing connections: salomon/accessing-the-cluster/outgoing-connections.md
    - VPN Access: salomon/accessing-the-cluster/vpn-access.md
    - Accessing the Cluster: salomon/accessing-the-cluster/accessing-the-cluster.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
  - Salomon Cluster Documentation-Network:
    - Introduction: salomon/network/network.md
    - IB single-plane topology: salomon/network/ib-single-plane-topology.md
    - 7D Enhanced Hypercube: salomon/network/7d-enhanced-hypercube.md
  - Salomon Cluster Documentation-Resource Allocation and Job Execution:
    - Introduction: salomon/resource-allocation-and-job-execution/introduction.md
    - Job scheduling: salomon/resource-allocation-and-job-execution/job-priority.md
    - Job submission and execution: salomon/resource-allocation-and-job-execution/job-submission-and-execution.md
    - Capacity computing: salomon/resource-allocation-and-job-execution/capacity-computing.md
    - Resources Allocation Policy: salomon/resource-allocation-and-job-execution/resources-allocation-policy.md
  - Salomon Cluster Documentation-Storage:
    - CESNET Data Storage: salomon/storage/cesnet-data-storage.md
    - Storage: salomon/storage/storage.md
  - Salomon Cluster Documentation-Software:
    - Compilers: salomon/software/compilers.md
    - Intel Xeon Phi: salomon/software/intel-xeon-phi.md
    - Java: salomon/software/java.md
    - Operating System: salomon/software/operating-system.md
  - Salomon Cluster Documentation-Software-Intel Suite:
    - Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md
    - Intel MKL: salomon/software/intel-suite/intel-mkl.md
    - Intel Compilers: salomon/software/intel-suite/intel-compilers.md
    - Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md
    - Intel TBB: salomon/software/intel-suite/intel-tbb.md
    - Intel Debugger: salomon/software/intel-suite/intel-debugger.md
    - Intel Inspector: salomon/software/intel-suite/intel-inspector.md
    - Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
    - Intel Advisor: salomon/software/intel-suite/intel-advisor.md
  - Salomon Cluster Documentation-Software-MPI:
    - Introduction: salomon/software/mpi/mpi.md
    - MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md
    - Running OpenMPI: salomon/software/mpi/Running_OpenMPI.md
  - Salomon Cluster Documentation-Software-Debuggers:
    - Introduction: salomon/software/debuggers/Introduction.md
    - Valgrind: salomon/software/debuggers/valgrind.md
    - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md
    - Total View: salomon/software/debuggers/total-view.md
    - Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md
    - Aislinn: salomon/software/debuggers/aislinn.md
    - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md
    - Vampir: salomon/software/debuggers/vampir.md
  - Salomon Cluster Documentation-Software-Numerical Languages:
    - Introduction: salomon/software/numerical-languages/introduction.md
    - R: salomon/software/numerical-languages/r.md
    - Matlab: salomon/software/numerical-languages/matlab.md
    - Octave: salomon/software/numerical-languages/octave.md
  - Salomon Cluster Documentation-Software-Chemistry:
    - Molpro: salomon/software/chemistry/molpro.md
    - Phono3py: salomon/software/chemistry/phono3py.md
    - NWChem: salomon/software/chemistry/nwchem.md
  - Salomon Cluster Documentation-Software-Comsol:
    - COMSOL: salomon/software/comsol/comsol-multiphysics.md
    - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md
  - Salomon Cluster Documentation-Software-Ansys:
    - Introduction: salomon/software/ansys/ansys.md
    - Workbench: salomon/software/ansys/workbench.md
    - ANSYS CFX: salomon/software/ansys/ansys-cfx.md
    - ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md
    - ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md
    - ANSYS Fluent: salomon/software/ansys/ansys-fluent.md
    - Setting license preferences: salomon/software/ansys/licensing.md
    - Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md
190
  - PBSPro Documentation: pbspro-documentation/sitemap.md
191

Lukáš Krupčík's avatar
Lukáš Krupčík committed
192
extra:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
193
  logo: img/favicon.ico
Lukáš Krupčík's avatar
Lukáš Krupčík committed
194
  palette:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
195
    primary: 'indigo'
Lukáš Krupčík's avatar
Lukáš Krupčík committed
196
    accent: 'light blue'
Lukáš Krupčík's avatar
Lukáš Krupčík committed
197
198
199
200
201
202
  font:
    text: 'Roboto'
    code: 'Roboto Mono'
  i18n:
    prev: 'Previous'
    next: 'Next'
Lukáš Krupčík's avatar
Lukáš Krupčík committed
203
markdown_extensions:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
204
205
206
  - codehilite(css_class=code)
  - admonition
  - toc:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
207
      permalink: '#'