mkdocs.yml 9.35 KB
Newer Older
Lukáš Krupčík's avatar
Lukáš Krupčík committed
1
2
site_name: IT4Innovations Documentation
docs_dir: docs.it4i
David Hrbáč's avatar
David Hrbáč committed
3
site_url: https://docs.it4i.cz/
4
extra_css:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
5
   - src/css.css
6
7
8
9
   - https://unpkg.com/mermaid@7.0.5/dist/mermaid.css

extra_javascript:
   - https://unpkg.com/mermaid@7.0.5/dist/mermaid.min.js
Lukáš Krupčík's avatar
Lukáš Krupčík committed
10

Lukáš Krupčík's avatar
Lukáš Krupčík committed
11
# Repository
David Hrbáč's avatar
David Hrbáč committed
12
repo_name: sccs/docs.it4i.cz
David Hrbáč's avatar
David Hrbáč committed
13
repo_url: https://code.it4i.cz/sccs/docs.it4i.cz
David Hrbáč's avatar
David Hrbáč committed
14

Lukáš Krupčík's avatar
Lukáš Krupčík committed
15
# Copyright
Lukáš Krupčík's avatar
Lukáš Krupčík committed
16
copyright: Copyright (c) 2013-2018 IT4Innovations / ver. 03ecba66 / 2018-10-16 10:21:23 +0200
17

David Hrbáč's avatar
David Hrbáč committed
18
theme:
David Hrbáč's avatar
David Hrbáč committed
19
20
  name: material
  custom_dir: material-new
David Hrbáč's avatar
David Hrbáč committed
21

David Hrbáč's avatar
David Hrbáč committed
22
23
24
25
  # 404 page
  static_templates:
    - 404.html

David Hrbáč's avatar
David Hrbáč committed
26
27
28
  feature:
    tabs: true

David Hrbáč's avatar
David Hrbáč committed
29
30
31
32
  # Don't include MkDocs' JavaScript
  include_search_page: false
  search_index_only: true

David Hrbáč's avatar
David Hrbáč committed
33
34
35
  font:
    text: 'Ubuntu'
    code: 'Ubuntu Mono'
David Hrbáč's avatar
David Hrbáč committed
36
  palette:
David Hrbáč's avatar
David Hrbáč committed
37
38
    primary: 'red'
    accent: 'deep orange'
David Hrbáč's avatar
David Hrbáč committed
39

David Hrbáč's avatar
David Hrbáč committed
40
41
42
  favicon: img/favicon.ico

nav:
David Hrbáč's avatar
David Hrbáč committed
43
44
  - General:
    - Home: index.md
David Hrbáč's avatar
David Hrbáč committed
45
    - Obtaining Login Credentials: general/obtaining-login-credentials/obtaining-login-credentials.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
46
    - Applying for Resources: general/applying-for-resources.md
David Hrbáč's avatar
David Hrbáč committed
47
    - Certificates FAQ: general/obtaining-login-credentials/certificates-faq.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
48
    - Resource Allocation and Job Execution: general/resource_allocation_and_job_execution.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
49
    - Connect to the Clusters:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
50
      - OpenSSH Keys (UNIX): general/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.md
David Hrbáč's avatar
David Hrbáč committed
51
52
53
54
      - PuTTY (Windows): general/accessing-the-clusters/shell-access-and-data-transfer/putty.md
      - X Window System: general/accessing-the-clusters/graphical-user-interface/x-window-system.md
      - VNC: general/accessing-the-clusters/graphical-user-interface/vnc.md
      - VPN Access: general/accessing-the-clusters/vpn-access.md
David Hrbáč's avatar
David Hrbáč committed
55
56
57
    - PRACE User Support: prace.md
    - API Documentation: apiv1.md
  - Salomon:
Pavel Jirásek's avatar
Pavel Jirásek committed
58
59
60
    - Introduction: salomon/introduction.md
    - Hardware Overview: salomon/hardware-overview.md
    - Accessing the Cluster: salomon/shell-and-data-access.md
Pavel Jirásek's avatar
Pavel Jirásek committed
61
62
63
64
65
    - Resource Allocation and Job Execution:
      - Resources Allocation Policy: salomon/resources-allocation-policy.md
      - Job Scheduling: salomon/job-priority.md
      - Job Submission and Execution: salomon/job-submission-and-execution.md
      - Capacity Computing: salomon/capacity-computing.md
Pavel Jirásek's avatar
Pavel Jirásek committed
66
    - Compute Nodes: salomon/compute-nodes.md
Pavel Jirásek's avatar
Pavel Jirásek committed
67
68
    - Network:
      - InfiniBand Network: salomon/network.md
Lukáš Krupčík's avatar
nadpis  
Lukáš Krupčík committed
69
      - IB Single-Plane Topology: salomon/ib-single-plane-topology.md
Pavel Jirásek's avatar
Pavel Jirásek committed
70
      - 7D Enhanced Hypercube: salomon/7d-enhanced-hypercube.md
Pavel Jirásek's avatar
Pavel Jirásek committed
71
    - Storage: salomon/storage.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
72
    - Visualization Servers: salomon/visualization.md
David Hrbáč's avatar
David Hrbáč committed
73
  - Anselm:
David Hrbáč's avatar
David Hrbáč committed
74
75
76
    - Introduction: anselm/introduction.md
    - Hardware Overview: anselm/hardware-overview.md
    - Accessing the Cluster: anselm/shell-and-data-access.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
77
    - Resource Allocation and Job Execution:
David Hrbáč's avatar
David Hrbáč committed
78
79
80
81
82
83
84
      - Resource Allocation Policy: anselm/resources-allocation-policy.md
      - Job Priority: anselm/job-priority.md
      - Job Submission and Execution: anselm/job-submission-and-execution.md
      - Capacity Computing: anselm/capacity-computing.md
    - Compute Nodes: anselm/compute-nodes.md
    - Storage: anselm/storage.md
    - Network: anselm/network.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
85
  - Software:
86
    - Environment and Modules: environment-and-modules.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
    - Modules:
      - Lmod Environment: software/modules/lmod.md
      - Intel Xeon Phi Environment: software/mic/mic_environment.md
      - Modules Matrix: modules-matrix.md
      - Job Features: job-features.md
      - Available Salomon Modules: modules-salomon.md
      - Available Salomon Modules on UV: modules-salomon-uv.md
      - Available Salomon Modules on PHI Cards: modules-salomon-phi.md
      - Available Anselm Modules: modules-anselm.md
    - ISV Licenses: software/isv_licenses.md
    - Bioinformatics:
      - Bioinformatics Applications: software/bio/bioinformatics.md
      - Omics Master:
        - Overview: software/bio/omics-master/overview.md
        - Diagnostic Component (TEAM): software/bio/omics-master/diagnostic-component-team.md
        - Priorization Component (BiERApp): software/bio/omics-master/priorization-component-bierapp.md
    - CAE:
      - COMSOL:
        - COMSOL: software/cae/comsol/comsol-multiphysics.md
        - Licensing and Available Versions: software/cae/comsol/licensing-and-available-versions.md
    - Chemistry:
      - Molpro: software/chemistry/molpro.md
      - Orca: software/chemistry/orca.md
      - NWChem: software/chemistry/nwchem.md
      - Phono3py: software/chemistry/phono3py.md
    - Compilers: software/compilers.md
    - Debuggers:
David Hrbáč's avatar
David Hrbáč committed
114
      - Introduction: software/debuggers/introduction.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
115
116
117
118
119
120
121
122
123
124
125
126
127
      - Aislinn: software/debuggers/aislinn.md
      - Allinea Forge (DDT,MAP): software/debuggers/allinea-ddt.md
      - Allinea Performance Reports: software/debuggers/allinea-performance-reports.md
      - CUBE: software/debuggers/cube.md
      - Intel Performance Counter Monitor: software/debuggers/intel-performance-counter-monitor.md
      - Intel VTune Amplifier XE: software/debuggers/intel-vtune-amplifier.md
      - PAPI: software/debuggers/papi.md
      - Scalasca: software/debuggers/scalasca.md
      - Score-P: software/debuggers/score-p.md
      - Total View: software/debuggers/total-view.md
      - Valgrind: software/debuggers/valgrind.md
      - Vampir: software/debuggers/vampir.md
    - GPU:
David Hrbáč's avatar
David Hrbáč committed
128
      - NVIDIA CUDA: anselm/software/nvidia-cuda.md
Lubomir Prda's avatar
Lubomir Prda committed
129
130
    - Intel:
      - Intel Suite:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
131
132
133
134
135
136
137
138
139
        - Introduction: software/intel/intel-suite/intel-parallel-studio-introduction.md
        - Intel Advisor: software/intel/intel-suite/intel-advisor.md
        - Intel Compilers: software/intel/intel-suite/intel-compilers.md
        - Intel Debugger: software/intel/intel-suite/intel-debugger.md
        - Intel IPP: software/intel/intel-suite/intel-integrated-performance-primitives.md
        - Intel Inspector: software/intel/intel-suite/intel-inspector.md
        - Intel MKL: software/intel/intel-suite/intel-mkl.md
        - Intel TBB: software/intel/intel-suite/intel-tbb.md
        - Intel Trace Analyzer and Collector: software/intel/intel-suite/intel-trace-analyzer-and-collector.md
Lubomir Prda's avatar
Lubomir Prda committed
140
      - Intel Xeon Phi:
Lukáš Krupčík's avatar
fix  
Lukáš Krupčík committed
141
142
        - Intel Xeon Phi Salomon: software/intel/intel-xeon-phi-salomon.md
        - Intel Xeon Phi Anselm: software/intel/intel-xeon-phi-anselm.md
Lubomir Prda's avatar
Lubomir Prda committed
143
    - Machine Learning:
Pavel Gajdušek's avatar
Pavel Gajdušek committed
144
145
      - Introduction: software/machine-learning/introduction.md
      - TensorFlow: software/machine-learning/tensorflow.md
Lubomir Prda's avatar
Lubomir Prda committed
146
    - MPI:
147
      - Introduction: software/mpi/mpi.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
148
      - OpenMPI Examples: software/mpi/ompi-examples.md
149
150
151
      - MPI4Py (MPI for Python): software/mpi/mpi4py-mpi-for-python.md
      - Running Open MPI: software/mpi/Running_OpenMPI.md
      - Running MPICH2: software/mpi/running-mpich2.md
Lubomir Prda's avatar
Lubomir Prda committed
152
    - Numerical Languages:
153
      - Introduction: software/numerical-languages/introduction.md
154
      - Clp: salomon/software/numerical-libraries/Clp.md
155
156
157
158
159
      - R: software/numerical-languages/r.md
      - Matlab: software/numerical-languages/matlab.md
      - Matlab 2013-2014: software/numerical-languages/matlab_1314.md
      - Octave: software/numerical-languages/octave.md
      - OpenCoarrays: software/numerical-languages/opencoarrays.md
Lubomir Prda's avatar
Lubomir Prda committed
160
    - Numerical Libraries:
161
162
163
164
165
166
167
      - FFTW: software/numerical-libraries/fftw.md
      - GSL: software/numerical-libraries/gsl.md
      - HDF5: software/numerical-libraries/hdf5.md
      - Intel Numerical Libraries: software/numerical-libraries/intel-numerical-libraries.md
      - MAGMA for Intel Xeon Phi: software/numerical-libraries/magma-for-intel-xeon-phi.md
      - PETSc: software/numerical-libraries/petsc.md
      - Trilinos: software/numerical-libraries/trilinos.md
Lubomir Prda's avatar
Lubomir Prda committed
168
    - Languages:
169
170
      - Java: software/lang/java.md
      - C#: software/lang/csc.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
171
      - Python: software/lang/python.md
172
      - Python-Conda: software/lang/conda.md
Lubomir Prda's avatar
Lubomir Prda committed
173
    - Phys:
174
      - LMGC90: salomon/software/phys/LMGC90.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
175
      - PragTic: salomon/software/phys/PragTic.md
Lubomir Prda's avatar
Lubomir Prda committed
176
177
    - Tools:
      - ANSYS:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
178
179
180
181
182
183
184
185
186
        - Introduction: software/tools/ansys/ansys.md
        - ANSYS CFX: software/tools/ansys/ansys-cfx.md
        - ANSYS Fluent: software/tools/ansys/ansys-fluent.md
        - ANSYS LS-DYNA: software/tools/ansys/ansys-ls-dyna.md
        - ANSYS MAPDL: software/tools/ansys/ansys-mechanical-apdl.md
        - LS-DYNA: software/tools/ansys/ls-dyna.md
        - Workbench: software/tools/ansys/workbench.md
        - Setting License Preferences: software/tools/ansys/licensing.md
        - Licensing and Available Versions: software/tools/ansys/setting-license-preferences.md
David Hrbáč's avatar
David Hrbáč committed
187
      - EasyBuild:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
188
189
        - Introduction: software/tools/easybuild.md
        - Generating Container Recipes and Images: software/tools/easybuild-images.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
190
191
192
      - Singularity Container:
        - Singularity: software/tools/singularity.md
        - Singularity on IT4Innovations: software/tools/singularity-it4i.md
Lukáš Krupčík's avatar
Lukáš Krupčík committed
193
194
      - Spack: software/tools/spack.md
      - Virtualization: software/tools/virtualization.md
Lubomir Prda's avatar
Lubomir Prda committed
195
    - Visualisation:
Lukáš Krupčík's avatar
Lukáš Krupčík committed
196
197
198
      - GPI-2: software/viz/gpi2.md
      - OpenFOAM: software/viz/openfoam.md
      - ParaView: software/viz/paraview.md
David Hrbáč's avatar
David Hrbáč committed
199
    - PBS Pro Documentation: pbspro.md
200

Lukáš Krupčík's avatar
Lukáš Krupčík committed
201
extra:
David Hrbáč's avatar
David Hrbáč committed
202
  repo_icon: gitlab
David Hrbáč's avatar
David Hrbáč committed
203
  disqus: 'test-3whnesz3gq'
David Hrbáč's avatar
David Hrbáč committed
204
205
  social:
    - type: 'gitlab'
David Hrbáč's avatar
David Hrbáč committed
206
      link: 'https://code.it4i.cz/sccs/docs.it4i.cz'
David Hrbáč's avatar
David Hrbáč committed
207
208
    - type: globe
      link: https://www.it4i.cz
Lukáš Krupčík's avatar
Lukáš Krupčík committed
209

Lukáš Krupčík's avatar
Lukáš Krupčík committed
210
markdown_extensions:
David Hrbáč's avatar
David Hrbáč committed
211
  - codehilite
David Hrbáč's avatar
David Hrbáč committed
212
213
  - markdown.extensions.admonition:
  - pymdownx.arithmatex:
David Hrbáč's avatar
David Hrbáč committed
214
215
  - markdown.extensions.toc:
      permalink: true
David Hrbáč's avatar
David Hrbáč committed
216
      slugify: !!python/name:pymdownx.slugs.uslugify
David Hrbáč's avatar
David Hrbáč committed
217
  - pymdownx.snippets:
David Hrbáč's avatar
David Hrbáč committed
218
      base_path: snippets
David Hrbáč's avatar
David Hrbáč committed
219
  - pymdownx.superfences
Lukáš Krupčík's avatar
Lukáš Krupčík committed
220
221
222

google_analytics:
  - 'UA-90498826-1'
Lukáš Krupčík's avatar
Lukáš Krupčík committed
223
  - 'auto'