From 00c001926a9e283f77081bc4cd53c2eb6859723e Mon Sep 17 00:00:00 2001
From: Jan Siwiec <jan.siwiec@vsb.cz>
Date: Mon, 7 Oct 2024 10:03:06 +0200
Subject: [PATCH] Update overview.md
---
docs.it4i/software/bio/omics-master/overview.md | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/docs.it4i/software/bio/omics-master/overview.md b/docs.it4i/software/bio/omics-master/overview.md
index f673c899b..3afadfc1b 100644
--- a/docs.it4i/software/bio/omics-master/overview.md
+++ b/docs.it4i/software/bio/omics-master/overview.md
@@ -15,7 +15,7 @@ Figure 1. OMICS MASTER solution overview. Data is produced in the external labs
Typical genomics pipelines are composed by several components that need to be launched manually. The advantage of OMICS MASTER pipeline is that all these components are invoked sequentially in an automated way.
-OMICS MASTER pipeline inputs a FASTQ file and outputs an enriched VCF file. This pipeline is able to queue all the jobs to PBS by only launching a process taking all the necessary input files and creates the intermediate and final folders
+OMICS MASTER pipeline inputs a FASTQ file and outputs an enriched VCF file. This pipeline is able to queue all the jobs by only launching a process taking all the necessary input files and creates the intermediate and final folders
Let us see each of the OMICS MASTER solution components:
@@ -223,9 +223,9 @@ second one.
-p , --ped. The ped file with the pedigree. This file contains all the sample names. These names must coincide with the names of the input folders. If our input folder contains more samples than the .ped file, the pipeline will use only the samples from the .ped file.
- --email. Email for PBS notifications.
+ --email. Email for notifications.
- --prefix. Prefix for PBS Job names.
+ --prefix. Prefix for Job names.
-s, --start & -e, --end. Initial and final stage. If we want to launch the pipeline in a specific stage we must use -s. If we want to end the pipeline in a specific stage we must use -e.
--
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