diff --git a/docs.it4i/anselm-cluster-documentation/capacity-computing.md b/docs.it4i/anselm-cluster-documentation/capacity-computing.md index 5021c12a2994303cd41a1e5cbff96cce0a3f3b72..6ce94ca34b77ac4b6cc24168fc36ae4e8e0839fa 100644 --- a/docs.it4i/anselm-cluster-documentation/capacity-computing.md +++ b/docs.it4i/anselm-cluster-documentation/capacity-computing.md @@ -290,7 +290,7 @@ When deciding this values, think about following guiding rules: 1. Number of tasks should be modulo 16. 1. These rules are valid only when all tasks have similar task walltimes T. -### Submit the Job Array +### Submit the Job Array (-J) To submit the job array, use the qsub -J command. The 992 tasks' job of the [example above](capacity-computing/#combined_example) may be submitted like this: diff --git a/docs.it4i/anselm-cluster-documentation/environment-and-modules.md b/docs.it4i/anselm-cluster-documentation/environment-and-modules.md index 2de4cf7f30e8b665f2d4f8b685dfe67f96221aa9..2aae813076a8f25d8b265cccb3d856f0dc8109fe 100644 --- a/docs.it4i/anselm-cluster-documentation/environment-and-modules.md +++ b/docs.it4i/anselm-cluster-documentation/environment-and-modules.md @@ -1,6 +1,6 @@ # Environment and Modules -### Environment Customization +## Environment Customization After logging in, you may want to configure the environment. Write your preferred path definitions, aliases, functions and module loads in the .bashrc file @@ -26,7 +26,7 @@ fi !!! note Do not run commands outputting to standard output (echo, module list, etc) in .bashrc for non-interactive SSH sessions. It breaks fundamental functionality (scp, PBS) of your account! Conside utilization of SSH session interactivity for such commands as stated in the previous example. -### Application Modules +## Application Modules In order to configure your shell for running particular application on Anselm we use Module package interface. @@ -75,7 +75,7 @@ PrgEnv-gnu sets up the GNU development environment in conjunction with the bullx PrgEnv-intel sets up the INTEL development environment in conjunction with the Intel MPI library -### Application Modules Path Expansion +## Application Modules Path Expansion All application modules on Salomon cluster (and further) will be build using tool called [EasyBuild](http://hpcugent.github.io/easybuild/ "EasyBuild"). In case that you want to use some applications that are build by EasyBuild already, you have to modify your MODULEPATH environment variable. diff --git a/docs.it4i/software/lmod.md b/docs.it4i/software/lmod.md index e28164a36a1473cd6403b1eda881206177f4b8d6..9c7f97739fbd5e92f77796bb2d7bfe5b7993089c 100644 --- a/docs.it4i/software/lmod.md +++ b/docs.it4i/software/lmod.md @@ -48,13 +48,13 @@ To get an overview of all available modules, you can use module avail or simply ```bash $ ml av ---------------------------------------- /apps/modules/compiler ---------------------------------------------- - GCC/5.2.0 GCCcore/6.2.0 (D) icc/2013.5.192 ifort/2013.5.192 LLVM/3.9.0-intel-2017.00 (D) - ... ... + GCC/5.2.0 GCCcore/6.2.0 (D) icc/2013.5.192 ifort/2013.5.192 LLVM/3.9.0-intel-2017.00 (D) + ... ... ---------------------------------------- /apps/modules/devel ------------------------------------------------- - Autoconf/2.69-foss-2015g CMake/3.0.0-intel-2016.01 M4/1.4.17-intel-2016.01 pkg-config/0.27.1-foss-2015g - Autoconf/2.69-foss-2016a CMake/3.3.1-foss-2015g M4/1.4.17-intel-2017.00 pkg-config/0.27.1-intel-2015b - ... ... + Autoconf/2.69-foss-2015g CMake/3.0.0-intel-2016.01 M4/1.4.17-intel-2016.01 pkg-config/0.27.1-foss-2015g + Autoconf/2.69-foss-2016a CMake/3.3.1-foss-2015g M4/1.4.17-intel-2017.00 pkg-config/0.27.1-intel-2015b + ... ... ``` In the current module naming scheme, each module name consists of two parts: diff --git a/docs.it4i/software/orca.md b/docs.it4i/software/orca.md index 6a8769c65c1033f1b55fecf26a1e7855bc3a9da6..8fcfd69bfb44f9f978b18d8b8ac4e82a71653f36 100644 --- a/docs.it4i/software/orca.md +++ b/docs.it4i/software/orca.md @@ -10,7 +10,7 @@ The following module command makes the latest version of orca available to your $ module load ORCA/3_0_3-linux_x86-64 ``` -**Dependency** +### Dependency ```bash $ module list