From 07b754e097a441cbefcbc5a659bb0242a1b19e74 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Krup=C4=8D=C3=ADk?= <lukas.krupcik@vsb.cz>
Date: Fri, 27 Jan 2017 12:07:26 +0100
Subject: [PATCH] update
---
.../anselm-cluster-documentation/capacity-computing.md | 2 +-
.../environment-and-modules.md | 6 +++---
docs.it4i/software/lmod.md | 10 +++++-----
docs.it4i/software/orca.md | 2 +-
4 files changed, 10 insertions(+), 10 deletions(-)
diff --git a/docs.it4i/anselm-cluster-documentation/capacity-computing.md b/docs.it4i/anselm-cluster-documentation/capacity-computing.md
index 5021c12a2..6ce94ca34 100644
--- a/docs.it4i/anselm-cluster-documentation/capacity-computing.md
+++ b/docs.it4i/anselm-cluster-documentation/capacity-computing.md
@@ -290,7 +290,7 @@ When deciding this values, think about following guiding rules:
1. Number of tasks should be modulo 16.
1. These rules are valid only when all tasks have similar task walltimes T.
-### Submit the Job Array
+### Submit the Job Array (-J)
To submit the job array, use the qsub -J command. The 992 tasks' job of the [example above](capacity-computing/#combined_example) may be submitted like this:
diff --git a/docs.it4i/anselm-cluster-documentation/environment-and-modules.md b/docs.it4i/anselm-cluster-documentation/environment-and-modules.md
index 2de4cf7f3..2aae81307 100644
--- a/docs.it4i/anselm-cluster-documentation/environment-and-modules.md
+++ b/docs.it4i/anselm-cluster-documentation/environment-and-modules.md
@@ -1,6 +1,6 @@
# Environment and Modules
-### Environment Customization
+## Environment Customization
After logging in, you may want to configure the environment. Write your preferred path definitions, aliases, functions and module loads in the .bashrc file
@@ -26,7 +26,7 @@ fi
!!! note
Do not run commands outputting to standard output (echo, module list, etc) in .bashrc for non-interactive SSH sessions. It breaks fundamental functionality (scp, PBS) of your account! Conside utilization of SSH session interactivity for such commands as stated in the previous example.
-### Application Modules
+## Application Modules
In order to configure your shell for running particular application on Anselm we use Module package interface.
@@ -75,7 +75,7 @@ PrgEnv-gnu sets up the GNU development environment in conjunction with the bullx
PrgEnv-intel sets up the INTEL development environment in conjunction with the Intel MPI library
-### Application Modules Path Expansion
+## Application Modules Path Expansion
All application modules on Salomon cluster (and further) will be build using tool called [EasyBuild](http://hpcugent.github.io/easybuild/ "EasyBuild"). In case that you want to use some applications that are build by EasyBuild already, you have to modify your MODULEPATH environment variable.
diff --git a/docs.it4i/software/lmod.md b/docs.it4i/software/lmod.md
index e28164a36..9c7f97739 100644
--- a/docs.it4i/software/lmod.md
+++ b/docs.it4i/software/lmod.md
@@ -48,13 +48,13 @@ To get an overview of all available modules, you can use module avail or simply
```bash
$ ml av
---------------------------------------- /apps/modules/compiler ----------------------------------------------
- GCC/5.2.0 GCCcore/6.2.0 (D) icc/2013.5.192 ifort/2013.5.192 LLVM/3.9.0-intel-2017.00 (D)
- ... ...
+ GCC/5.2.0 GCCcore/6.2.0 (D) icc/2013.5.192 ifort/2013.5.192 LLVM/3.9.0-intel-2017.00 (D)
+ ... ...
---------------------------------------- /apps/modules/devel -------------------------------------------------
- Autoconf/2.69-foss-2015g CMake/3.0.0-intel-2016.01 M4/1.4.17-intel-2016.01 pkg-config/0.27.1-foss-2015g
- Autoconf/2.69-foss-2016a CMake/3.3.1-foss-2015g M4/1.4.17-intel-2017.00 pkg-config/0.27.1-intel-2015b
- ... ...
+ Autoconf/2.69-foss-2015g CMake/3.0.0-intel-2016.01 M4/1.4.17-intel-2016.01 pkg-config/0.27.1-foss-2015g
+ Autoconf/2.69-foss-2016a CMake/3.3.1-foss-2015g M4/1.4.17-intel-2017.00 pkg-config/0.27.1-intel-2015b
+ ... ...
```
In the current module naming scheme, each module name consists of two parts:
diff --git a/docs.it4i/software/orca.md b/docs.it4i/software/orca.md
index 6a8769c65..8fcfd69bf 100644
--- a/docs.it4i/software/orca.md
+++ b/docs.it4i/software/orca.md
@@ -10,7 +10,7 @@ The following module command makes the latest version of orca available to your
$ module load ORCA/3_0_3-linux_x86-64
```
-**Dependency**
+### Dependency
```bash
$ module list
--
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