From 081522321d551f0113201a7477aa06f48873a41d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?David=20Hrb=C3=A1=C4=8D?= <david@hrbac.cz>
Date: Fri, 20 Jan 2017 16:21:21 +0100
Subject: [PATCH] Refactored menu

---
 mkdocs.yml | 240 ++++++++++++++++++++++++++---------------------------
 1 file changed, 120 insertions(+), 120 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index dff94552b..ce0215f2f 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -36,73 +36,72 @@ pages:
     - Job Submission and Execution: anselm-cluster-documentation/job-submission-and-execution.md
     - Capacity computing: anselm-cluster-documentation/capacity-computing.md
     - Storage: anselm-cluster-documentation/storage.md
-#  - Anselm Cluster Software: anselm-cluster-documentation/software/index.md
-  - 'Anselm Cluster Software':
-    - Modules: modules-anselm.md
-    - COMSOL: anselm-cluster-documentation/software/comsol-multiphysics.md
-    - ParaView: anselm-cluster-documentation/software/paraview.md
-    - Compilers: anselm-cluster-documentation/software/compilers.md
-    - nVidia CUDA: anselm-cluster-documentation/software/nvidia-cuda.md
-    - GPI-2: anselm-cluster-documentation/software/gpi2.md
-    - OpenFOAM: anselm-cluster-documentation/software/openfoam.md
-    - ISV Licenses: anselm-cluster-documentation/software/isv_licenses.md
-    - Intel Xeon Phi: anselm-cluster-documentation/software/intel-xeon-phi.md
-    - Virtualization: anselm-cluster-documentation/software/kvirtualization.md
-    - Java: anselm-cluster-documentation/software/java.md
-    - Operating System: anselm-cluster-documentation/software/operating-system.md
-    - 'Intel Suite':
-      - Introduction: anselm-cluster-documentation/software/intel-suite/introduction.md
-      - Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md
-      - Intel Compilers: anselm-cluster-documentation/software/intel-suite/intel-compilers.md
-      - Intel IPP: anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md
-      - Intel TBB: anselm-cluster-documentation/software/intel-suite/intel-tbb.md
-      - Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md
-    - 'MPI':
-      - Introduction: anselm-cluster-documentation/software/mpi/mpi.md
-      - MPI4Py (MPI for Python): anselm-cluster-documentation/software/mpi/mpi4py-mpi-for-python.md
-      - Running OpenMPI: anselm-cluster-documentation/software/mpi/Running_OpenMPI.md
-      - Running MPICH2: anselm-cluster-documentation/software/mpi/running-mpich2.md
-    - 'Numerical Libraries':
-      - Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md
-      - PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md
-      - Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md
-      - FFTW: anselm-cluster-documentation/software/numerical-libraries/fftw.md
-      - GSL: anselm-cluster-documentation/software/numerical-libraries/gsl.md
-      - MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
-      - HDF5: anselm-cluster-documentation/software/numerical-libraries/hdf5.md
-    - 'Omics Master':
-      - Diagnostic component (TEAM): anselm-cluster-documentation/software/omics-master/diagnostic-component-team.md
-      - Priorization component (BiERApp): anselm-cluster-documentation/software/omics-master/priorization-component-bierapp.md
-      - Overview: anselm-cluster-documentation/software/omics-master/overview.md
-    - 'Debuggers':
-      - Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md
-      - PAPI: anselm-cluster-documentation/software/debuggers/papi.md
-      - Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md
-      - Total View: anselm-cluster-documentation/software/debuggers/total-view.md
-      - CUBE: anselm-cluster-documentation/software/debuggers/cube.md
-      - Intel VTune Amplifier: anselm-cluster-documentation/software/debuggers/intel-vtune-amplifier.md
-      - VNC: anselm-cluster-documentation/software/debuggers/debuggers.md
-      - Scalasca: anselm-cluster-documentation/software/debuggers/scalasca.md
-      - Score-P: anselm-cluster-documentation/software/debuggers/score-p.md
-      - Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
-      - Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md
-      - Vampir: anselm-cluster-documentation/software/debuggers/vampir.md
-    - 'Numerical Languages':
-      - Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md
-      - R: anselm-cluster-documentation/software/numerical-languages/r.md
-      - Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab_1314.md
-      - Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md
-      - Octave: anselm-cluster-documentation/software/numerical-languages/octave.md
-    - 'Chemistry':
-      - Molpro: anselm-cluster-documentation/software/chemistry/molpro.md
-      - NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md
-    - 'Ansys':
-      - Introduction: anselm-cluster-documentation/software/ansys/ansys.md
-      - ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md
-      - ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md
-      - ANSYS MAPDL: anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md
-      - LS-DYNA: anselm-cluster-documentation/software/ansys/ls-dyna.md
-      - ANSYS Fluent: anselm-cluster-documentation/software/ansys/ansys-fluent.md
+    - Software:
+      - Modules: modules-anselm.md
+      - COMSOL: anselm-cluster-documentation/software/comsol-multiphysics.md
+      - ParaView: anselm-cluster-documentation/software/paraview.md
+      - Compilers: anselm-cluster-documentation/software/compilers.md
+      - nVidia CUDA: anselm-cluster-documentation/software/nvidia-cuda.md
+      - GPI-2: anselm-cluster-documentation/software/gpi2.md
+      - OpenFOAM: anselm-cluster-documentation/software/openfoam.md
+      - ISV Licenses: anselm-cluster-documentation/software/isv_licenses.md
+      - Intel Xeon Phi: anselm-cluster-documentation/software/intel-xeon-phi.md
+      - Virtualization: anselm-cluster-documentation/software/kvirtualization.md
+      - Java: anselm-cluster-documentation/software/java.md
+      - Operating System: anselm-cluster-documentation/software/operating-system.md
+      - 'Intel Suite':
+        - Introduction: anselm-cluster-documentation/software/intel-suite/introduction.md
+        - Intel MKL: anselm-cluster-documentation/software/intel-suite/intel-mkl.md
+        - Intel Compilers: anselm-cluster-documentation/software/intel-suite/intel-compilers.md
+        - Intel IPP: anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md
+        - Intel TBB: anselm-cluster-documentation/software/intel-suite/intel-tbb.md
+        - Intel Debugger: anselm-cluster-documentation/software/intel-suite/intel-debugger.md
+      - 'MPI':
+        - Introduction: anselm-cluster-documentation/software/mpi/mpi.md
+        - MPI4Py (MPI for Python): anselm-cluster-documentation/software/mpi/mpi4py-mpi-for-python.md
+        - Running OpenMPI: anselm-cluster-documentation/software/mpi/Running_OpenMPI.md
+        - Running MPICH2: anselm-cluster-documentation/software/mpi/running-mpich2.md
+      - 'Numerical Libraries':
+        - Intel numerical libraries: anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md
+        - PETSc: anselm-cluster-documentation/software/numerical-libraries/petsc.md
+        - Trilinos: anselm-cluster-documentation/software/numerical-libraries/trilinos.md
+        - FFTW: anselm-cluster-documentation/software/numerical-libraries/fftw.md
+        - GSL: anselm-cluster-documentation/software/numerical-libraries/gsl.md
+        - MAGMA for Intel Xeon Phi: anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
+        - HDF5: anselm-cluster-documentation/software/numerical-libraries/hdf5.md
+      - 'Omics Master':
+        - Diagnostic component (TEAM): anselm-cluster-documentation/software/omics-master/diagnostic-component-team.md
+        - Priorization component (BiERApp): anselm-cluster-documentation/software/omics-master/priorization-component-bierapp.md
+        - Overview: anselm-cluster-documentation/software/omics-master/overview.md
+      - 'Debuggers':
+        - Valgrind: anselm-cluster-documentation/software/debuggers/valgrind.md
+        - PAPI: anselm-cluster-documentation/software/debuggers/papi.md
+        - Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md
+        - Total View: anselm-cluster-documentation/software/debuggers/total-view.md
+        - CUBE: anselm-cluster-documentation/software/debuggers/cube.md
+        - Intel VTune Amplifier: anselm-cluster-documentation/software/debuggers/intel-vtune-amplifier.md
+        - VNC: anselm-cluster-documentation/software/debuggers/debuggers.md
+        - Scalasca: anselm-cluster-documentation/software/debuggers/scalasca.md
+        - Score-P: anselm-cluster-documentation/software/debuggers/score-p.md
+        - Intel Performance Counter Monitor: anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
+        - Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md
+        - Vampir: anselm-cluster-documentation/software/debuggers/vampir.md
+      - 'Numerical Languages':
+        - Introduction: anselm-cluster-documentation/software/numerical-languages/introduction.md
+        - R: anselm-cluster-documentation/software/numerical-languages/r.md
+        - Matlab 2013-2014: anselm-cluster-documentation/software/numerical-languages/matlab_1314.md
+        - Matlab: anselm-cluster-documentation/software/numerical-languages/matlab.md
+        - Octave: anselm-cluster-documentation/software/numerical-languages/octave.md
+      - 'Chemistry':
+        - Molpro: anselm-cluster-documentation/software/chemistry/molpro.md
+        - NWChem: anselm-cluster-documentation/software/chemistry/nwchem.md
+      - 'Ansys':
+        - Introduction: anselm-cluster-documentation/software/ansys/ansys.md
+        - ANSYS CFX: anselm-cluster-documentation/software/ansys/ansys-cfx.md
+        - ANSYS LS-DYNA: anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md
+        - ANSYS MAPDL: anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md
+        - LS-DYNA: anselm-cluster-documentation/software/ansys/ls-dyna.md
+        - ANSYS Fluent: anselm-cluster-documentation/software/ansys/ansys-fluent.md
   - Salomon Cluster:
     - Introduction: salomon/introduction.md
     - PRACE User Support: salomon/prace.md
@@ -118,60 +117,61 @@ pages:
     - Job submission and execution: salomon/job-submission-and-execution.md
     - Capacity computing: salomon/capacity-computing.md
     - Storage: salomon/storage.md
-  - 'Salomon Cluster Software':
-    - Modules: modules-salomon.md
-    - UV Modules: modules-salomon-uv.md
-    - Compilers: salomon/software/compilers.md
-    - Intel Xeon Phi: salomon/software/intel-xeon-phi.md
-    - Java: salomon/software/java.md
-    - Operating System: salomon/software/operating-system.md
-    - 'Intel Suite':
-      - Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md
-      - Intel MKL: salomon/software/intel-suite/intel-mkl.md
-      - Intel Compilers: salomon/software/intel-suite/intel-compilers.md
-      - Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md
-      - Intel TBB: salomon/software/intel-suite/intel-tbb.md
-      - Intel Debugger: salomon/software/intel-suite/intel-debugger.md
-      - Intel Inspector: salomon/software/intel-suite/intel-inspector.md
-      - Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
-      - Intel Advisor: salomon/software/intel-suite/intel-advisor.md
-    - 'MPI':
-      - Introduction: salomon/software/mpi/mpi.md
-      - MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md
-      - Running OpenMPI: salomon/software/mpi/Running_OpenMPI.md
-    - 'Debuggers':
-      - Introduction: salomon/software/debuggers/Introduction.md
-      - Valgrind: salomon/software/debuggers/valgrind.md
-      - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md
-      - Total View: salomon/software/debuggers/total-view.md
-      - Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md
-      - Aislinn: salomon/software/debuggers/aislinn.md
-      - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md
-      - Vampir: salomon/software/debuggers/vampir.md
-    - 'Numerical Languages':
-      - Introduction: salomon/software/numerical-languages/introduction.md
-      - R: salomon/software/numerical-languages/r.md
-      - Matlab: salomon/software/numerical-languages/matlab.md
-      - Octave: salomon/software/numerical-languages/octave.md
-    - 'Chemistry':
-      - Molpro: salomon/software/chemistry/molpro.md
-      - Phono3py: salomon/software/chemistry/phono3py.md
-      - NWChem: salomon/software/chemistry/nwchem.md
-    - 'Comsol':
-      - COMSOL: salomon/software/comsol/comsol-multiphysics.md
-      - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md
-    - 'Ansys':
-      - Introduction: salomon/software/ansys/ansys.md
-      - Workbench: salomon/software/ansys/workbench.md
-      - ANSYS CFX: salomon/software/ansys/ansys-cfx.md
-      - ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md
-      - ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md
-      - ANSYS Fluent: salomon/software/ansys/ansys-fluent.md
-      - Setting license preferences: salomon/software/ansys/licensing.md
-      - Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md
+    - Software:
+      - Modules: modules-salomon.md
+      - UV Modules: modules-salomon-uv.md
+      - Compilers: salomon/software/compilers.md
+      - Intel Xeon Phi: salomon/software/intel-xeon-phi.md
+      - Java: salomon/software/java.md
+      - Operating System: salomon/software/operating-system.md
+      - 'Intel Suite':
+        - Introduction: salomon/software/intel-suite/intel-parallel-studio-introduction.md
+        - Intel MKL: salomon/software/intel-suite/intel-mkl.md
+        - Intel Compilers: salomon/software/intel-suite/intel-compilers.md
+        - Intel IPP: salomon/software/intel-suite/intel-integrated-performance-primitives.md
+        - Intel TBB: salomon/software/intel-suite/intel-tbb.md
+        - Intel Debugger: salomon/software/intel-suite/intel-debugger.md
+        - Intel Inspector: salomon/software/intel-suite/intel-inspector.md
+        - Intel Trace Analyzer and Collector: salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
+        - Intel Advisor: salomon/software/intel-suite/intel-advisor.md
+      - 'MPI':
+        - Introduction: salomon/software/mpi/mpi.md
+        - MPI4Py (MPI for Python): salomon/software/mpi/mpi4py-mpi-for-python.md
+        - Running OpenMPI: salomon/software/mpi/Running_OpenMPI.md
+      - 'Debuggers':
+        - Introduction: salomon/software/debuggers/Introduction.md
+        - Valgrind: salomon/software/debuggers/valgrind.md
+        - Allinea Forge (DDT,MAP): salomon/software/debuggers/allinea-ddt.md
+        - Total View: salomon/software/debuggers/total-view.md
+        - Intel VTune Amplifier XE: salomon/software/debuggers/intel-vtune-amplifier.md
+        - Aislinn: salomon/software/debuggers/aislinn.md
+        - Allinea Performance Reports: salomon/software/debuggers/allinea-performance-reports.md
+        - Vampir: salomon/software/debuggers/vampir.md
+      - 'Numerical Languages':
+        - Introduction: salomon/software/numerical-languages/introduction.md
+        - R: salomon/software/numerical-languages/r.md
+        - Matlab: salomon/software/numerical-languages/matlab.md
+        - Octave: salomon/software/numerical-languages/octave.md
+      - 'Chemistry':
+        - Molpro: salomon/software/chemistry/molpro.md
+        - Phono3py: salomon/software/chemistry/phono3py.md
+        - NWChem: salomon/software/chemistry/nwchem.md
+      - 'Comsol':
+        - COMSOL: salomon/software/comsol/comsol-multiphysics.md
+        - Licensing and Available Versions: salomon/software/comsol/licensing-and-available-versions.md
+      - 'Ansys':
+        - Introduction: salomon/software/ansys/ansys.md
+        - Workbench: salomon/software/ansys/workbench.md
+        - ANSYS CFX: salomon/software/ansys/ansys-cfx.md
+        - ANSYS LS-DYNA: salomon/software/ansys/ansys-ls-dyna.md
+        - ANSYS MAPDL: salomon/software/ansys/ansys-mechanical-apdl.md
+        - ANSYS Fluent: salomon/software/ansys/ansys-fluent.md
+        - Setting license preferences: salomon/software/ansys/licensing.md
+        - Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md
   - PBSPro Documentation: pbspro-documentation/pbspro.md
-  - Colors: colors.md
-  - All modules: all_modules.md
+  - Testing:
+    - Colors: colors.md
+    - Modules Matrix: modules_matrix.md
 
 extra:
   #logo: img/logo2.png
-- 
GitLab