From 16f585fa73d72dfa6e8b75ae75a19056bec47ba4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Krup=C4=8D=C3=ADk?= <lukas.krupcik@vsb.cz>
Date: Wed, 7 Mar 2018 12:48:47 +0100
Subject: [PATCH] fix
---
docs.it4i/software/tools/singularity-it4i.md | 46 +++++---------------
1 file changed, 11 insertions(+), 35 deletions(-)
diff --git a/docs.it4i/software/tools/singularity-it4i.md b/docs.it4i/software/tools/singularity-it4i.md
index dfd37b357..1b64a4d96 100644
--- a/docs.it4i/software/tools/singularity-it4i.md
+++ b/docs.it4i/software/tools/singularity-it4i.md
@@ -6,26 +6,22 @@ On clusters we have different versions of operating systems images. Below you se
Salomon Anselm
├── CentOS ├── CentOS
│ ├── 6.9 │ ├── 6.9
- │ ├── 6.9-shell │ ├── 6.9-shell
│ ├── 6.9-MIC │ ├── 6.9-GPU
- │ ├── 6.9-MIC-shell │ ├── 6.9-GPU-shell
- │ ├── 7.3 │ ├── 7.3
- │ └── 7.3-shell │ └── 7.3-shell
+ │ └── 7.3 │ └── 7.3
├── Debian ├── Debian
- │ ├── 8.0 │ ├── 8.0
- │ └── 8.0-shell │ └── 8.0-shell
+ │ └── 8.0 │ └── 8.0
├── Fedora ├── Fedora
- │ ├── 26 │ ├── 26
- │ └── 26-shell │ └── 26-shell
+ │ └── 26 │ └── 26
└── Ubuntu └── Ubuntu
- ├── 16.04 ├── 16.04
- └── 16.04-shell └── 16.04-shell
+ └── 16.04 └── 16.04
```
-For current information on available images, refer to the `ml av` statement and the `OS`
+For current information on available images, refer to the `ml av` and see statement the `OS`
## Available Operating Systems Images
+On IT4Innovations clusters we support different operating system.
+
**Supported OS:**
* CentOS
@@ -38,17 +34,11 @@ For current information on available images, refer to the `ml av` statement and
* GPU - graphics cards
* MIC - Intel Xeon Phi cards
-**Type images**
-
-* classic
-* shell - automatics start shell after load module
-
## IT4Innovations Wrappers
For using modules we prepared special wrappers
* image-exec
-* image-load
* image-mpi
* image-run
* image-shell
@@ -65,17 +55,13 @@ image-exec cat /etc/centos-release
CentOS Linux release 7.3.1708 (Core)
```
-**image-load**
-
-Settings and loading image. Script for `shell` modules.
-
**image-mpi**
MPI wrapper. More in the chapter [Examples MPI](#MPI)
**image-run**
-Run subscript into image
+Run subscript into image.
**image-shell**
@@ -125,22 +111,10 @@ Your image of CentOS/6.9 is at location: /home/login/.singularity/images/CentOS-
!!! note
First usage image copy image from /apps/all/OS/... to your /home (.singularity/images)
-For classic image, but autostart shell
-
-```console
-$ ml CentOS/6.9-shell
-Singularity: Invoking an interactive shell within container...
-
-Singularity CentOS-6.9_20180220133305.img:> exit
-exit
-Welcome to the normal operating system ()
-```
-
For special image (GPU, MIC)
```console
$ ml CentOS/6.9-GPU
-
```
!!! note
@@ -153,7 +127,8 @@ Submited job `qsub -A PROJECT -q qprod -l select=2:mpiprocs=24 -l walltime=00:30
### MPI Into Image
```console
-$ ml CentOS/6.9-shell
+$ ml CentOS/6.9
+$ image-shell
Singularity: Invoking an interactive shell within container...
Singularity CentOS-6.9_20180220092823.img:~> mpirun hostname | wc -l
@@ -183,5 +158,6 @@ $ image-mpi hostname | wc -l
1. Transfer image to your local computer
1. Edit image
+1. Transfer image from your local computer to cluster /home
1. Load module Singularity (`ml Singularity`)
1. Use your image
--
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