From 251471df0ba5cb5ac5fffb60bc133eed9ce8f819 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Krup=C4=8D=C3=ADk?= <lukas.krupcik@vsb.cz>
Date: Tue, 19 Jul 2016 12:39:37 +0200
Subject: [PATCH] new version
---
README.md | 6 +
.../software.1.md | 3 -
.../software/ansys/ansys-cfx-pbs-file/view.md | 2 -
.../ansys/ansys-fluent-pbs-file/view.md | 2 -
.../ansys/ansys-ls-dyna-pbs-file/view.md | 2 -
.../ansys/ansys-mapdl-pbs-file/view.md | 2 -
.../software/ansys/licensing.md | 2 -
.../software/ansys/ls-dyna-pbs-file/view.md | 2 -
.../software/chemistry.md | 5 -
.../mympiprog_32p_2014-10-15_16-56.md | 3 -
.../software/numerical-libraries.md | 3 -
.../software/omics-master-1.md | 5 -
.../software/omics-master-1/images.md | 1 -
.../images/fig1.png/image_view_fullscreen.md | 5 -
.../omics-master-1/images/fig1.png/view.md | 5 -
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.../table1.png/image_view_fullscreen.md | 5 -
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docs.it4i.cz/changelog.md | 3 -
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.../graphical-user-interface/vnc/vnc.md | 4 +-
.../changelog.md | 3 -
.../obtaining-login-credentials.md | 3 -
docs.it4i.cz/pbspro-documentation.md | 3 -
.../pbspro-programmers-guide/view.md | 3 -
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docs.it4i.cz/robots.txt | 23 --
.../graphical-user-interface/vnc.md | 4 +-
docs.it4i.cz/salomon/compute-nodes.md | 4 +-
.../view.md | 1 -
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docs.it4i.cz/salomon/software.md | 3 -
.../software/ansys/ansys-cfx-pbs-file/view.md | 2 -
.../ansys/ansys-fluent-pbs-file/view.md | 2 -
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.../software/ansys/ls-dyna-pbs-file/view.md | 2 -
docs.it4i.cz/salomon/software/chemistry.md | 1 -
.../software/chemistry/phono3py-input.md | 1 -
.../chemistry/phono3py-input/INCAR/view.md | 1 -
.../chemistry/phono3py-input/KPOINTS/view.md | 1 -
.../chemistry/phono3py-input/POTCAR/view.md | 1 -
.../phono3py-input/gofree-cond1.sh/view.md | 1 -
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.../phono3py-input/prepare.sh/view.md | 1 -
.../chemistry/phono3py-input/run.sh/view.md | 1 -
.../phono3py-input/submit.sh/view.md | 1 -
.../image_view_fullscreen.md | 4 -
.../view.md | 4 -
.../mympiprog_32p_2014-10-15_16-56.md | 4 -
.../salomon/software/debuggers/score-p.md | 4 -
docs.it4i.cz/salomon/software/isv_licenses.md | 2 -
docs.it4i.cz/sitemap.md | 4 -
docs.it4i.cz/whats-new.md | 1 -
docs.it4i.cz/whats-new/downtimes_history.md | 89 +++---
docs.it4i.cz/whats-new/news-feed.1.md | 5 -
.../allinea-forge-5-1-installed-on-anselm.md | 5 -
.../whats-new/news-feed/allinea-forge-6.0.md | 1 -
.../allinea-tools-updated-to-6-0.6.md | 1 -
...-downtime-has-been-extended-to-feb-26th.md | 1 -
.../news-feed/ansys-17-0-installed.md | 5 -
.../cuda-7-5-is-now-installed-on-anselm.md | 1 -
.../intel-parallel-studio-2016-update-3.md | 1 -
...plifier-support-for-xeon-phi-on-salomon.md | 1 -
.../news-feed/intel-vtune-is-working.md | 5 -
.../issue-with-intel-mpi-4-1-1-on-salomon.md | 5 -
.../whats-new/news-feed/matlab-2015b.md | 1 -
.../mono-4-2-2-and-mpi-net-1-2-on-salomon.md | 1 -
...ff-4-1_g-trimmomatic-0-35-java-1-7.0_79.md | 5 -
...-method-to-execute-parallel-matlab-jobs.md | 5 -
...el-programming-in-modern-fortran-course.md | 5 -
...f-allinea-forge-and-performance-version.md | 5 -
.../octave-updated-to-4-0-1-on-anselm.md | 1 -
.../news-feed/salomon-pbs-changes.md | 5 -
.../whats-new/news-feed/vampir-installed.md | 5 -
html_md.sh | 49 ++--
info/files_md.txt | 276 ------------------
info/list_md.txt | 189 ++++++++++++
info/list_png.txt | 2 +-
98 files changed, 279 insertions(+), 645 deletions(-)
delete mode 100644 docs.it4i.cz/anselm-cluster-documentation/software.1.md
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rename docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/{8e80a92f-f691-4d92-8e62-344128dcc00b.png => 44048cfa-e854-4cb4-902b-c173821c2db1.png} (100%)
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diff --git a/README.md b/README.md
index 7a9549b28..80ec25797 100644
--- a/README.md
+++ b/README.md
@@ -28,6 +28,12 @@ Konverze html do md
html_md.sh -c
```
+Přehled o souborech (složka info)
+
+```bash
+html_md.sh -i
+```
+
Smazánà html/md souborů
```bash
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diff --git a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/8e80a92f-f691-4d92-8e62-344128dcc00b.png b/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/44048cfa-e854-4cb4-902b-c173821c2db1.png
similarity index 100%
rename from docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/8e80a92f-f691-4d92-8e62-344128dcc00b.png
rename to docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/44048cfa-e854-4cb4-902b-c173821c2db1.png
diff --git a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/vnc.md b/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/vnc.md
index ebb203071..230ae392f 100644
--- a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/vnc.md
+++ b/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/vnc.md
@@ -199,12 +199,12 @@ session](../../../../salomon/gnome_screen.jpg/@@images/7758b792-24eb-48dc-bf72-6
Open Screensaver preferences dialog:
[](../../../../salomon/gnome_screen.jpg.1)
+Preferences](gdmscreensaver.png/@@images/44048cfa-e854-4cb4-902b-c173821c2db1.png "Screensaver Preferences")](../../../../salomon/gnome_screen.jpg.1)
Uncheck both options below the slider:
[](gdmdisablescreensaver.png)
+screensaver](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmdisablescreensaver.png/@@images/0259b284-18eb-402c-a55c-584562e26b47.png "Disable lock screen and screensaver")](gdmdisablescreensaver.png)
### Kill screensaver if locked screen
diff --git a/docs.it4i.cz/get-started-with-it4innovations/changelog.md b/docs.it4i.cz/get-started-with-it4innovations/changelog.md
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-# http://www.google.com/support/webmasters/bin/answer.py?answer=40367&ctx=sibling
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diff --git a/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc.md b/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc.md
index f174c6c9f..4d232ffa7 100644
--- a/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc.md
+++ b/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc.md
@@ -200,12 +200,12 @@ session](../../gnome_screen.jpg/@@images/7758b792-24eb-48dc-bf72-618cda100fda.pn
Open Screensaver preferences dialog:
[](../../gnome_screen.jpg.1)
+Preferences](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/44048cfa-e854-4cb4-902b-c173821c2db1.png "Screensaver Preferences")](../../gnome_screen.jpg.1)
Uncheck both options below the slider:
[](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmdisablescreensaver.png)
+screensaver](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmdisablescreensaver.png/@@images/0259b284-18eb-402c-a55c-584562e26b47.png "Disable lock screen and screensaver")](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmdisablescreensaver.png)
### Kill screensaver if locked screen
diff --git a/docs.it4i.cz/salomon/compute-nodes.md b/docs.it4i.cz/salomon/compute-nodes.md
index 54e3b7023..b83281bd6 100644
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+++ b/docs.it4i.cz/salomon/compute-nodes.md
@@ -40,7 +40,7 @@ topology](network-1/ib-single-plane-topology.html).
-[](cn_m_cell)
+[](cn_m_cell)
### **Compute Nodes With MIC Accelerator**
@@ -77,7 +77,7 @@ topology](network-1/ib-single-plane-topology.html).
-[](cn_mic-1)
+[](cn_mic-1)
[](https://www.sgi.com/products/servers/rackable/1u_intel.html#v3 "(source Silicon Graphics International Corp.)")[{.image-inline
diff --git a/docs.it4i.cz/salomon/network-1/IB single-plane topology - Accelerated nodes.pdf/view.md b/docs.it4i.cz/salomon/network-1/IB single-plane topology - Accelerated nodes.pdf/view.md
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diff --git a/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB single-plane topology - ICEX Mcell.pdf/view.md b/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB single-plane topology - ICEX Mcell.pdf/view.md
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diff --git a/docs.it4i.cz/salomon/software/isv_licenses.md b/docs.it4i.cz/salomon/software/isv_licenses.md
deleted file mode 100644
index 139597f9c..000000000
--- a/docs.it4i.cz/salomon/software/isv_licenses.md
+++ /dev/null
@@ -1,2 +0,0 @@
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diff --git a/docs.it4i.cz/sitemap.md b/docs.it4i.cz/sitemap.md
deleted file mode 100644
index fd40910d9..000000000
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+++ /dev/null
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diff --git a/docs.it4i.cz/whats-new.md b/docs.it4i.cz/whats-new.md
deleted file mode 100644
index 8b1378917..000000000
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+++ /dev/null
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diff --git a/docs.it4i.cz/whats-new/downtimes_history.md b/docs.it4i.cz/whats-new/downtimes_history.md
index 5ba19ab3d..8f9727cb4 100644
--- a/docs.it4i.cz/whats-new/downtimes_history.md
+++ b/docs.it4i.cz/whats-new/downtimes_history.md
@@ -18,20 +18,27 @@ planned downtimes, outages etc.
</thead>
<tbody>
<tr class="odd">
+<td align="left">2016-07-19 10:51:02</td>
+<td align="left"><strong>Anselm planned downtime</strong>
+<p></p>
+<p>There's a planned maintenance window from 2016-08-16 07:00 till 2016-06-18 20:00 CEST.</p>
+</td>
+</tr>
+<tr class="even">
<td align="left">2016-07-15 08:20:00</td>
<td align="left"><strong>Salomon cluster maintenance outage</strong>
<p></p>
<p>From 2016-07-20 09:00 till  2016-07-21 12:00 CEST will be maintenance outage for Salomon.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2016-06-29 13:50:00</td>
<td align="left"><strong>Salomon cluster maintenance outage prolonged</strong>
<p></p>
<p>Important! Salomon cluster maintenance outage will be prolonged till 2016-06-29 20:00 CEST.</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2016-06-16 00:00:00</td>
<td align="left"><strong>Salomon planned downtime</strong>
<p></p>
@@ -40,7 +47,7 @@ planned downtimes, outages etc.
the IT4Innovations team</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2016-05-26 10:31:44</td>
<td align="left"><strong>Salomon planned downtime</strong>
<p></p>
@@ -49,42 +56,42 @@ the IT4Innovations team</p>
the IT4Innovations team</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2016-04-27 15:57:28</td>
<td align="left"><strong>Salomon cluster maintenance outage prolonged</strong>
<p></p>
<p>Important! Salomon cluster maintenance outage will be prolonged till 2016-04-28 14:00 CEST</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2016-03-31 19:03:25</td>
<td align="left"><strong>Failure on Salomon Cooling System</strong>
<p></p>
<p>We have very serious issue with Salomon cooling system since 2016-03-31 10:00. We are working to resolve the issue.</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2016-03-31 18:59:04</td>
<td align="left"><strong>Salomon Back in Production</strong>
<p></p>
<p>As of 2016-03-31 19:30 CET, the Salomon is back in production. The outage was caused by an issue in cooling system.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2016-03-30 15:57:57</td>
<td align="left"><strong>PBS malfunction</strong>
<p></p>
<p>We've had several issues with PBS scheduler since 2016-03-30 13:00 CEST. We are still working on it.</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2016-03-26 09:52:41</td>
<td align="left"><strong>Salomon back to production</strong>
<p></p>
<p>We have recovered all the issues with the Salomon cluster.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2016-03-26 09:51:16</td>
<td align="left"><strong>Failure on Salomon Cooling Infrastructure</strong>
<p></p>
@@ -93,28 +100,28 @@ the IT4Innovations team</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2016-03-14 14:57:51</td>
<td align="left"><strong>Infrastructure Maintenance</strong>
<p></p>
<p>The Salomon supercomputer will be down for the maintenance from 2016-03-22 10:00 CEST to 2016-03-22 17:00 CEST.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2016-02-24 12:30:00</td>
<td align="left"><strong>Anselm Upgrade</strong>
<p></p>
<p>The Anselm supercomputer will be down for the updates from 2016-02-01 to 2016-02-29.</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2016-02-23 08:45:45</td>
<td align="left"><strong>Anselm Upgrade</strong>
<p></p>
<p>The Anselm supercomputer will be down for the updates from 2016-02-01 to 2016-02-29.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2016-02-14 08:07:46</td>
<td align="left"><strong>Failure on Salomon Infiniband Network</strong>
<p></p>
@@ -123,7 +130,7 @@ the IT4Innovations team</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2016-02-04 11:53:30</td>
<td align="left"><strong>Short network outage</strong>
<p></p>
@@ -131,21 +138,21 @@ the IT4Innovations team</p>
<p>Thanks for your understanding.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2016-02-04 11:52:37</td>
<td align="left"><strong>Salomon Upgrade</strong>
<p></p>
<p>The Salomon supercomputer will be down for the updates from 2016-02-16 09:00 CEST to 2016-02-16 13:00 CEST.</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2016-02-04 11:52:25</td>
<td align="left"><strong>Salomon Upgrade</strong>
<p></p>
<p>The Salomon supercomputer will be down for the updates from 2016-02-16 09:00 CEST to 2016-02-16 13:00 CEST.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2015-11-26 08:11:25</td>
<td align="left"><strong>/home downtime</strong>
<p></p>
@@ -157,7 +164,7 @@ Thank you for understanding,<br />
the IT4I team</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2015-11-24 09:10:15</td>
<td align="left"><strong>The /home filesystem was down</strong>
<p></p>
@@ -165,7 +172,7 @@ the IT4I team</p>
<span>We apologize for inconvenience.</span></p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2015-09-04 16:14:12</td>
<td align="left"><strong>SCRATCH downtime</strong>
<p></p>
@@ -177,7 +184,7 @@ Thank you for understanding,<br />
the IT4Innovations team</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2015-08-27 00:00:00</td>
<td align="left"><strong>Today's SCRATCH downtime</strong>
<p></p>
@@ -189,7 +196,7 @@ Thank you for understanding,<br />
the IT4Innovations team</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2015-08-12 00:00:00</td>
<td align="left"><strong>Unplanned downtime</strong>
<p></p>
@@ -201,7 +208,7 @@ We're sorry for the inconvenience,<br />
the IT4I team</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2015-08-06 00:00:00</td>
<td align="left"><strong>SCRATCH downtime</strong>
<p></p>
@@ -213,7 +220,7 @@ Thank you for understanding,<br />
the IT4Innovations team</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2014-11-14 10:27:51</td>
<td align="left"><strong>Unplanned PBS Downtime</strong>
<p></p>
@@ -225,14 +232,14 @@ Thank you for understanding,<br />
Anselm Admins</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2014-11-14 10:27:50</td>
<td align="left"><strong>Login1 troubles</strong>
<p></p>
<p>Login1 had a short unplanned downtime. Sorry for the troubles.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2014-10-14 20:30:00</td>
<td align="left"><strong>Unexpected power failure</strong>
<p></p>
@@ -246,7 +253,7 @@ Anselm Admins</p>
Anselm Administrators</span></p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2014-07-17 13:50:00</td>
<td align="left"><strong>Login2(!) downtime</strong>
<p></p>
@@ -258,7 +265,7 @@ Thank you for understanding,<br />
Anselm Admins</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2014-07-16 13:11:34</td>
<td align="left"><strong>Login1 downtime</strong>
<p></p>
@@ -270,7 +277,7 @@ Thank you for understanding,<br />
Anselm Admins</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2014-06-18 10:51:56</td>
<td align="left"><strong>Login2 downtime</strong>
<p></p>
@@ -282,7 +289,7 @@ Thank you for understanding,<br />
Anselm Admins</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2014-05-22 00:00:00</td>
<td align="left"><strong>Outage</strong>
<p></p>
@@ -294,7 +301,7 @@ Sorry for the inconveniences,<br />
Anselm admins</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2014-04-11 11:30:00</td>
<td align="left"><strong>Heartbleed bug</strong>
<p></p>
@@ -309,14 +316,14 @@ Thank you for your understanding.<br />
IT4Innovations team</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2014-04-02 13:05:00</td>
<td align="left"><strong>Scheduler is Down</strong>
<p></p>
<p>We are sorry for the current scheduler issues which are caused by an inconsistency of the internal PBS database. Thus it's not possible to interact with the scheduler now. In addition, some jobs may be affected and some job outputs may not be retrieved at this moment.</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2014-03-26 15:50:00</td>
<td align="left"><strong>Temporary Scratch Mount on Login1</strong>
<p></p>
@@ -324,7 +331,7 @@ IT4Innovations team</p>
<p>/scratch_nfs/</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2014-03-26 13:10:00</td>
<td align="left"><strong>Both Login Nodes Inaccessible</strong>
<p></p>
@@ -332,7 +339,7 @@ IT4Innovations team</p>
<p>Thank you for understanding.</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2014-03-25 22:05:00</td>
<td align="left"><strong>Login1(!) Not Responding</strong>
<p></p>
@@ -340,7 +347,7 @@ IT4Innovations team</p>
<p>We'll let you know by MOTD when login1 comes back online.</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2013-12-03 00:00:00</td>
<td align="left"><strong>Planned Downtime</strong>
<p></p>
@@ -366,7 +373,7 @@ After the period:<br />
We are sorry for the inconvenience.</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2013-10-14 00:00:00</td>
<td align="left"><strong>Cooling system unstable</strong>
<p></p>
@@ -380,7 +387,7 @@ Sincerely yours,<br />
Anselm admins</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2013-09-17 15:50:00</td>
<td align="left"><strong>A Fair Amount of Nodes Down</strong>
<p></p>
@@ -394,7 +401,7 @@ We are sorry for the troubles,<br />
Anselm admins</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2013-08-23 15:25:00</td>
<td align="left"><strong>Infiniband Maintenance Window</strong>
<p></p>
@@ -409,7 +416,7 @@ Sincerely yours,<br />
Anselm Admins</p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2013-08-14 17:10:00</td>
<td align="left"><strong>Planned Upgrade / Scheduler Downtime</strong>
<p></p>
@@ -421,7 +428,7 @@ Thank you for understanding,<br />
Anselm Admins</p>
</td>
</tr>
-<tr class="odd">
+<tr class="even">
<td align="left">2013-07-16 13:45:00</td>
<td align="left"><strong>Anselm Cluster Upgrade - July 23rd</strong>
<p></p>
@@ -438,7 +445,7 @@ Anselm cluster documentation can be found at:<br />
<a href="http://support.it4i.cz/docs/anselm-cluster-documentation/" class="uri" class="external-link">http://support.it4i.cz/docs/anselm-cluster-documentation/</a></p>
</td>
</tr>
-<tr class="even">
+<tr class="odd">
<td align="left">2013-06-27 09:35:00</td>
<td align="left"><strong>SSH Password Authentication</strong>
<p></p>
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deleted file mode 100644
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+++ /dev/null
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deleted file mode 100644
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diff --git a/docs.it4i.cz/whats-new/news-feed/matlab-2015b.md b/docs.it4i.cz/whats-new/news-feed/matlab-2015b.md
deleted file mode 100644
index 8b1378917..000000000
--- a/docs.it4i.cz/whats-new/news-feed/matlab-2015b.md
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/docs.it4i.cz/whats-new/news-feed/mono-4-2-2-and-mpi-net-1-2-on-salomon.md b/docs.it4i.cz/whats-new/news-feed/mono-4-2-2-and-mpi-net-1-2-on-salomon.md
deleted file mode 100644
index 8b1378917..000000000
--- a/docs.it4i.cz/whats-new/news-feed/mono-4-2-2-and-mpi-net-1-2-on-salomon.md
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/docs.it4i.cz/whats-new/news-feed/new-bioinformatic-tools-installed-fastqc-0-11-3-gatk-3-5-java-1-7-0_79-picard-2-1-0-samtools-1-3-foss-2015g-snpeff-4-1_g-trimmomatic-0-35-java-1-7.0_79.md b/docs.it4i.cz/whats-new/news-feed/new-bioinformatic-tools-installed-fastqc-0-11-3-gatk-3-5-java-1-7-0_79-picard-2-1-0-samtools-1-3-foss-2015g-snpeff-4-1_g-trimmomatic-0-35-java-1-7.0_79.md
deleted file mode 100644
index 3f2ff2d6c..000000000
--- a/docs.it4i.cz/whats-new/news-feed/new-bioinformatic-tools-installed-fastqc-0-11-3-gatk-3-5-java-1-7-0_79-picard-2-1-0-samtools-1-3-foss-2015g-snpeff-4-1_g-trimmomatic-0-35-java-1-7.0_79.md
+++ /dev/null
@@ -1,5 +0,0 @@
-
-
-
-
-
diff --git a/docs.it4i.cz/whats-new/news-feed/new-method-to-execute-parallel-matlab-jobs.md b/docs.it4i.cz/whats-new/news-feed/new-method-to-execute-parallel-matlab-jobs.md
deleted file mode 100644
index 3f2ff2d6c..000000000
--- a/docs.it4i.cz/whats-new/news-feed/new-method-to-execute-parallel-matlab-jobs.md
+++ /dev/null
@@ -1,5 +0,0 @@
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-
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diff --git a/docs.it4i.cz/whats-new/news-feed/new-modules-for-parallel-programming-in-modern-fortran-course.md b/docs.it4i.cz/whats-new/news-feed/new-modules-for-parallel-programming-in-modern-fortran-course.md
deleted file mode 100644
index 3f2ff2d6c..000000000
--- a/docs.it4i.cz/whats-new/news-feed/new-modules-for-parallel-programming-in-modern-fortran-course.md
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diff --git a/docs.it4i.cz/whats-new/news-feed/new-versions-of-allinea-forge-and-performance-version.md b/docs.it4i.cz/whats-new/news-feed/new-versions-of-allinea-forge-and-performance-version.md
deleted file mode 100644
index 3f2ff2d6c..000000000
--- a/docs.it4i.cz/whats-new/news-feed/new-versions-of-allinea-forge-and-performance-version.md
+++ /dev/null
@@ -1,5 +0,0 @@
-
-
-
-
-
diff --git a/docs.it4i.cz/whats-new/news-feed/octave-updated-to-4-0-1-on-anselm.md b/docs.it4i.cz/whats-new/news-feed/octave-updated-to-4-0-1-on-anselm.md
deleted file mode 100644
index 8b1378917..000000000
--- a/docs.it4i.cz/whats-new/news-feed/octave-updated-to-4-0-1-on-anselm.md
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/docs.it4i.cz/whats-new/news-feed/salomon-pbs-changes.md b/docs.it4i.cz/whats-new/news-feed/salomon-pbs-changes.md
deleted file mode 100644
index 3f2ff2d6c..000000000
--- a/docs.it4i.cz/whats-new/news-feed/salomon-pbs-changes.md
+++ /dev/null
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diff --git a/docs.it4i.cz/whats-new/news-feed/vampir-installed.md b/docs.it4i.cz/whats-new/news-feed/vampir-installed.md
deleted file mode 100644
index 3f2ff2d6c..000000000
--- a/docs.it4i.cz/whats-new/news-feed/vampir-installed.md
+++ /dev/null
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-
-
-
-
-
diff --git a/html_md.sh b/html_md.sh
index 64e3ade5f..57c5c6385 100755
--- a/html_md.sh
+++ b/html_md.sh
@@ -21,21 +21,7 @@ if [ "$1" = "-d" ]; then
done
fi
fi
-if [ "$1" = "-w" ]; then
- # download html pages
- wget -X changelog,portal_css,portal_javascripts,++resource++jquery-ui-themes,anselm-cluster-documentation/icon.jpg -R favicon.ico,pdf.png,logo.png,background.png,application.png,search_icon.png,png.png,sh.png,touch_icon.png,anselm-cluster-documentation/icon.jpg,*js,robots.txt,*xml,RSS,download_icon.png,*zip,*rar,@@*,anselm-cluster-documentation/icon.jpg.1 --mirror --convert-links --adjust-extension --page-requisites --no-parent https://docs.it4i.cz;
-fi
-if [ "$1" = "-c" ]; then
- # delete all .md files
- find . -name "*.md" |
- while read i;
- do
- rm "$i";
- echo "$i deleted";
- done
-
- rm -rf info;
-
+if [ "$1" = "-i" ]; then
# create folder info
mkdir info;
@@ -51,6 +37,26 @@ if [ "$1" = "-c" ]; then
echo "$i" >> ./info/list_jpg.txt;
done
+ find . -name "*.md" |
+ while read i;
+ do
+ echo "$i" >> ./info/list_md.txt;
+ done
+fi
+if [ "$1" = "-w" ]; then
+ # download html pages
+ wget -X changelog,portal_css,portal_javascripts,++resource++jquery-ui-themes,anselm-cluster-documentation/icon.jpg -R favicon.ico,pdf.png,logo.png,background.png,application.png,search_icon.png,png.png,sh.png,touch_icon.png,anselm-cluster-documentation/icon.jpg,*js,robots.txt,*xml,RSS,download_icon.png,*zip,*rar,@@*,anselm-cluster-documentation/icon.jpg.1 --mirror --convert-links --adjust-extension --page-requisites --no-parent https://docs.it4i.cz;
+fi
+if [ "$1" = "-c" ]; then
+ # delete all .md files
+ find . -name "*.md" |
+ while read i;
+ do
+ rm "$i";
+ echo "$i deleted";
+ done
+
+ rm -rf info;
# html -> md
find . -name "*.ht*" |
@@ -72,9 +78,6 @@ if [ "$1" = "-c" ]; then
pandoc -f html -t markdown+pipe_tables-grid_tables "${i%.*}TMP.html" -o "${i%.*}.md";
rm "${i%.*}TMP.html";
- # folder info, file strukture, list of all files and his addres into folders
- echo "${i%.*}" >> ./info/files_md.txt;
-
# create filter_auto
grep -o -P '(?<={).*(?=})' "${i%.*}.md" | sort -u | sed '/{/d' | sed '/\$/d' >> filter_auto;
sort -u filter_auto -o filter_auto;
@@ -97,9 +100,15 @@ if [ "$1" = "-c" ]; then
done) < filter_auto
# delete temporary files
- rm "${i%.*}TMP.md";
-
+ rm "${i%.*}TMP.md";
+ done
+ find -type f -size -10c |
+ while read i;
+ do
+ rm "$i";
+ echo "$i deleted";
done
rm filter_autoTMP
rm filter_auto
+ rm docs.it4i.cz/robots.txt
fi
diff --git a/info/files_md.txt b/info/files_md.txt
deleted file mode 100644
index 5dea2aae5..000000000
--- a/info/files_md.txt
+++ /dev/null
@@ -1,276 +0,0 @@
-./docs.it4i.cz/whats-new
-./docs.it4i.cz/salomon
-./docs.it4i.cz/whats-new/downtimes_history
-./docs.it4i.cz/whats-new/news-feed.1
-./docs.it4i.cz/whats-new/news-feed/salomon-pbs-changes
-./docs.it4i.cz/whats-new/news-feed/new-method-to-execute-parallel-matlab-jobs
-./docs.it4i.cz/whats-new/news-feed/new-versions-of-allinea-forge-and-performance-version
-./docs.it4i.cz/whats-new/news-feed/new-bioinformatic-tools-installed-fastqc-0-11-3-gatk-3-5-java-1-7-0_79-picard-2-1-0-samtools-1-3-foss-2015g-snpeff-4-1_g-trimmomatic-0-35-java-1-7.0_79
-./docs.it4i.cz/whats-new/news-feed/new-modules-for-parallel-programming-in-modern-fortran-course
-./docs.it4i.cz/whats-new/news-feed/allinea-forge-5-1-installed-on-anselm
-./docs.it4i.cz/whats-new/news-feed/intel-vtune-is-working
-./docs.it4i.cz/whats-new/news-feed/vampir-installed
-./docs.it4i.cz/whats-new/news-feed/issue-with-intel-mpi-4-1-1-on-salomon
-./docs.it4i.cz/whats-new/news-feed/added-basic-documentation-for-intel-advisor-and-intel-inspector
-./docs.it4i.cz/whats-new/news-feed/ansys-17-0-installed
-./docs.it4i.cz/whats-new/news-feed/allinea-forge-documentation-updated
-./docs.it4i.cz/whats-new/news-feed/intel-vtune-amplifier-support-for-xeon-phi-on-salomon
-./docs.it4i.cz/whats-new/news-feed/anselm-downtime-has-been-extended-to-feb-26th
-./docs.it4i.cz/whats-new/news-feed/octave-updated-to-4-0-1-on-anselm
-./docs.it4i.cz/whats-new/news-feed/allinea-tools-updated-to-6-0.6
-./docs.it4i.cz/whats-new/news-feed/mono-4-2-2-and-mpi-net-1-2-on-salomon
-./docs.it4i.cz/whats-new/news-feed/allinea-forge-6.0
-./docs.it4i.cz/whats-new/news-feed/cuda-7-5-is-now-installed-on-anselm
-./docs.it4i.cz/whats-new/news-feed/intel-parallel-studio-2016-update-3
-./docs.it4i.cz/whats-new/news-feed/matlab-2015b
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/vnc
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system.1
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/graphical-user-interface
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/cygwin-and-x11-forwarding
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/cygwin-and-x11-forwarding/cygwin-and-x11-forwarding
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty.1
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/accessing-the-clusters
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/pageant
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/puttygen
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/putty
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface
-./docs.it4i.cz/get-started-with-it4innovations/changelog
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters
-./docs.it4i.cz/get-started-with-it4innovations/obtaining-login-credentials/certificates-faq
-./docs.it4i.cz/get-started-with-it4innovations/obtaining-login-credentials/obtaining-login-credentials
-./docs.it4i.cz/get-started-with-it4innovations/obtaining-login-credentials
-./docs.it4i.cz/get-started-with-it4innovations/applying-for-resources
-./docs.it4i.cz/get-started-with-it4innovations/introduction
-./docs.it4i.cz/salomon/hardware-overview-1.1
-./docs.it4i.cz/salomon/resource-allocation-and-job-execution/job-priority
-./docs.it4i.cz/salomon/resource-allocation-and-job-execution/resources-allocation-policy
-./docs.it4i.cz/salomon/resource-allocation-and-job-execution/job-submission-and-execution
-./docs.it4i.cz/salomon/resource-allocation-and-job-execution/introduction
-./docs.it4i.cz/salomon/resource-allocation-and-job-execution/capacity-computing
-./docs.it4i.cz/salomon/storage
-./docs.it4i.cz/salomon/compute-nodes
-./docs.it4i.cz/salomon/resource-allocation-and-job-execution
-./docs.it4i.cz/salomon/network-1
-./docs.it4i.cz/salomon/prace
-./docs.it4i.cz/salomon/network-1/IB single-plane topology - Accelerated nodes.pdf/view
-./docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB single-plane topology - ICEX Mcell.pdf/view
-./docs.it4i.cz/salomon/network-1/ib-single-plane-topology/schematic-representation-of-the-salomon-cluster-ib-single-plain-topology-hypercube-dimension-0
-./docs.it4i.cz/salomon/network-1/ib-single-plane-topology
-./docs.it4i.cz/salomon/network-1/network
-./docs.it4i.cz/salomon/network-1/7d-enhanced-hypercube
-./docs.it4i.cz/salomon/accessing-the-cluster/vpn-access
-./docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc
-./docs.it4i.cz/salomon/accessing-the-cluster/shell-and-data-access/shell-and-data-access
-./docs.it4i.cz/salomon/accessing-the-cluster/outgoing-connections
-./docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface
-./docs.it4i.cz/salomon/software/debuggers/summary
-./docs.it4i.cz/salomon/software/debuggers/valgrind
-./docs.it4i.cz/salomon/software/debuggers/total-view
-./docs.it4i.cz/salomon/software/debuggers/allinea-performance-reports
-./docs.it4i.cz/salomon/software/debuggers/mympiprog_32p_2014-10-15_16-56
-./docs.it4i.cz/salomon/software/debuggers/intel-vtune-amplifier
-./docs.it4i.cz/salomon/software/debuggers/score-p
-./docs.it4i.cz/salomon/software/debuggers/Snmekobrazovky20160708v12.33.35.png/image_view_fullscreen
-./docs.it4i.cz/salomon/software/debuggers/Snmekobrazovky20160708v12.33.35.png/view
-./docs.it4i.cz/salomon/software/debuggers/aislinn
-./docs.it4i.cz/salomon/software/debuggers/vampir
-./docs.it4i.cz/salomon/software/mpi-1
-./docs.it4i.cz/salomon/software/numerical-languages/r
-./docs.it4i.cz/salomon/software/numerical-languages/octave
-./docs.it4i.cz/salomon/software/numerical-languages/matlab
-./docs.it4i.cz/salomon/software/numerical-languages/introduction
-./docs.it4i.cz/salomon/software/mpi-1/mpi
-./docs.it4i.cz/salomon/software/mpi-1/mpi4py-mpi-for-python
-./docs.it4i.cz/salomon/software/mpi-1/Running_OpenMPI
-./docs.it4i.cz/salomon/software/intel-suite
-./docs.it4i.cz/salomon/software/operating-system
-./docs.it4i.cz/salomon/software/numerical-languages.1
-./docs.it4i.cz/salomon/software/java
-./docs.it4i.cz/salomon/software/chemistry/nwchem
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input/KPOINTS/view
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input/POTCAR/view
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input/gofree-cond1.sh/view
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input/INCAR/view
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input/prepare.sh/view
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input/submit.sh/view
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input/poscar-si/view
-./docs.it4i.cz/salomon/software/chemistry/phono3py-input/run.sh/view
-./docs.it4i.cz/salomon/software/chemistry/molpro
-./docs.it4i.cz/salomon/software/chemistry/phono3py
-./docs.it4i.cz/salomon/software/chemistry
-./docs.it4i.cz/salomon/software/compilers
-./docs.it4i.cz/salomon/software/ansys
-./docs.it4i.cz/salomon/software/intel-suite/intel-inspector
-./docs.it4i.cz/salomon/software/intel-suite/intel-compilers
-./docs.it4i.cz/salomon/software/intel-suite/intel-trace-analyzer-and-collector
-./docs.it4i.cz/salomon/software/intel-suite/intel-tbb
-./docs.it4i.cz/salomon/software/intel-suite/intel-parallel-studio-introduction
-./docs.it4i.cz/salomon/software/intel-suite/intel-debugger
-./docs.it4i.cz/salomon/software/intel-suite/intel-mkl
-./docs.it4i.cz/salomon/software/intel-suite/intel-advisor
-./docs.it4i.cz/salomon/software/intel-suite/intel-integrated-performance-primitives
-./docs.it4i.cz/salomon/software/comsol
-./docs.it4i.cz/salomon/software/comsol/comsol-multiphysics
-./docs.it4i.cz/salomon/software/comsol/licensing-and-available-versions
-./docs.it4i.cz/salomon/software/isv_licenses
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-./docs.it4i.cz/salomon/software/ansys/ansys-mapdl-pbs-file/view
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-./docs.it4i.cz/salomon/software/ansys/ansys-mechanical-apdl
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-./docs.it4i.cz/salomon/software/ansys/ansys-products-mechanical-fluent-cfx-mapdl
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-./docs.it4i.cz/salomon/software
-./docs.it4i.cz/salomon/environment-and-modules
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-./docs.it4i.cz/anselm-cluster-documentation/storage-1/storage
-./docs.it4i.cz/anselm-cluster-documentation/storage-1/cesnet-data-storage
-./docs.it4i.cz/anselm-cluster-documentation/prace
-./docs.it4i.cz/anselm-cluster-documentation/network
-./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/vpn-access
-./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/x-window-and-vnc
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-./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/storage-1
-./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/summary
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/valgrind
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/total-view
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/allinea-performance-reports
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/mympiprog_32p_2014-10-15_16-56
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/intel-vtune-amplifier
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/score-p
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/allinea-ddt
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/cube
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/papi
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/scalasca
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/vampir
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diff --git a/info/list_md.txt b/info/list_md.txt
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+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages.1.md
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/gsl.md
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/trilinos.md
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/hdf5.md
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/intel-numerical-libraries.md
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/fftw.md
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/petsc.md
+./docs.it4i.cz/anselm-cluster-documentation/network.md
+./docs.it4i.cz/anselm-cluster-documentation/remote-visualization.md
+./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster.md
+./docs.it4i.cz/anselm-cluster-documentation/compute-nodes.md
+./docs.it4i.cz/anselm-cluster-documentation/storage-1.md
+./docs.it4i.cz/salomon.md
+./docs.it4i.cz/vpn-connection-fail-in-win-8.1.md
+./docs.it4i.cz/anselm-cluster-documentation.md
+./docs.it4i.cz/index.md
diff --git a/info/list_png.txt b/info/list_png.txt
index 92f556b66..c00dbb9ba 100644
--- a/info/list_png.txt
+++ b/info/list_png.txt
@@ -2,7 +2,7 @@
./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/putty-tunnel.png
./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gnome-terminal.png
./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png
-./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/8e80a92f-f691-4d92-8e62-344128dcc00b.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/44048cfa-e854-4cb4-902b-c173821c2db1.png
./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gnome-compute-nodes-over-vnc.png
./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmdisablescreensaver.png
./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/cygwin-and-x11-forwarding/cygwinX11forwarding.png
--
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