From 407d8b276a6f4146180d7484f12e56d29ed49aa0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Krup=C4=8D=C3=ADk?= <lukas.krupcik@vsb.cz>
Date: Fri, 17 Feb 2017 11:37:26 +0100
Subject: [PATCH] module load -> ml

---
 docs.it4i/anselm/software/ansys/ansys.md           |  2 +-
 docs.it4i/anselm/software/debuggers/allinea-ddt.md |  6 +++---
 .../debuggers/allinea-performance-reports.md       |  4 ++--
 docs.it4i/anselm/software/debuggers/debuggers.md   | 10 +++++-----
 .../debuggers/intel-performance-counter-monitor.md |  2 +-
 docs.it4i/anselm/software/debuggers/papi.md        |  8 ++++----
 docs.it4i/anselm/software/debuggers/vampir.md      |  2 +-
 docs.it4i/anselm/software/intel-suite/intel-mkl.md |  4 ++--
 .../software/numerical-languages/matlab_1314.md    |  4 ++--
 .../salomon/software/comsol/comsol-multiphysics.md |  6 +++---
 .../salomon/software/debuggers/Introduction.md     |  4 ++--
 .../salomon/software/debuggers/allinea-ddt.md      |  2 +-
 .../debuggers/allinea-performance-reports.md       |  2 +-
 .../salomon/software/intel-suite/intel-mkl.md      | 14 +++++++-------
 .../intel-trace-analyzer-and-collector.md          |  2 +-
 docs.it4i/salomon/software/mpi/mpi.md              |  2 +-
 .../software/numerical-languages/introduction.md   |  6 +++---
 .../salomon/software/numerical-languages/matlab.md |  4 ++--
 .../salomon/software/numerical-languages/r.md      |  2 +-
 19 files changed, 43 insertions(+), 43 deletions(-)

diff --git a/docs.it4i/anselm/software/ansys/ansys.md b/docs.it4i/anselm/software/ansys/ansys.md
index 0e4634e5f..24b8b1c09 100644
--- a/docs.it4i/anselm/software/ansys/ansys.md
+++ b/docs.it4i/anselm/software/ansys/ansys.md
@@ -7,7 +7,7 @@ Anselm provides commercial as well as academic variants. Academic variants are d
 To load the latest version of any ANSYS product (Mechanical, Fluent, CFX, MAPDL,...) load the module:
 
 ```console
-$ module load ansys
+$ ml ansys
 ```
 
 ANSYS supports interactive regime, but due to assumed solution of extremely difficult tasks it is not recommended.
diff --git a/docs.it4i/anselm/software/debuggers/allinea-ddt.md b/docs.it4i/anselm/software/debuggers/allinea-ddt.md
index e1fc0ddc5..f85848417 100644
--- a/docs.it4i/anselm/software/debuggers/allinea-ddt.md
+++ b/docs.it4i/anselm/software/debuggers/allinea-ddt.md
@@ -25,14 +25,14 @@ In case of debugging on accelerators:
 Load all necessary modules to compile the code. For example:
 
 ```console
-$ module load intel
-$ module load impi   ... or ... module load openmpi/X.X.X-icc
+$ ml intel
+$ ml impi   ... or ... module load openmpi/X.X.X-icc
 ```
 
 Load the Allinea DDT module:
 
 ```console
-$ module load Forge
+$ ml Forge
 ```
 
 Compile the code:
diff --git a/docs.it4i/anselm/software/debuggers/allinea-performance-reports.md b/docs.it4i/anselm/software/debuggers/allinea-performance-reports.md
index e263bb3b0..a5399a61e 100644
--- a/docs.it4i/anselm/software/debuggers/allinea-performance-reports.md
+++ b/docs.it4i/anselm/software/debuggers/allinea-performance-reports.md
@@ -13,7 +13,7 @@ Our license is limited to 64 MPI processes.
 Allinea Performance Reports version 6.0 is available
 
 ```console
-$ module load PerformanceReports/6.0
+$ ml PerformanceReports/6.0
 ```
 
 The module sets up environment variables, required for using the Allinea Performance Reports. This particular command loads the default module, which is performance reports version 4.2.
@@ -46,7 +46,7 @@ $ qsub -q qexp -l select=2:ncpus=16:mpiprocs=16:ompthreads=1 -I
 Then we load the modules and run the program the usual way:
 
 ```console
-$ module load intel impi allinea-perf-report/4.2
+$ ml intel impi allinea-perf-report/4.2
 $ mpirun ./mympiprog.x
 ```
 
diff --git a/docs.it4i/anselm/software/debuggers/debuggers.md b/docs.it4i/anselm/software/debuggers/debuggers.md
index 31fbd5370..3d38fd6a5 100644
--- a/docs.it4i/anselm/software/debuggers/debuggers.md
+++ b/docs.it4i/anselm/software/debuggers/debuggers.md
@@ -9,7 +9,7 @@ We provide state of the art programms and tools to develop, profile and debug HP
 The intel debugger version 13.0 is available, via module intel. The debugger works for applications compiled with C and C++ compiler and the ifort fortran 77/90/95 compiler. The debugger provides java GUI environment. Use X display for running the GUI.
 
 ```console
-$ module load intel
+$ ml intel
 $ idb
 ```
 
@@ -20,7 +20,7 @@ Read more at the [Intel Debugger](intel-suite/intel-debugger/) page.
 Allinea DDT, is a commercial debugger primarily for debugging parallel MPI or OpenMP programs. It also has a support for GPU (CUDA) and Intel Xeon Phi accelerators. DDT provides all the standard debugging features (stack trace, breakpoints, watches, view variables, threads etc.) for every thread running as part of your program, or for every process even if these processes are distributed across a cluster using an MPI implementation.
 
 ```console
-$ module load Forge
+$ ml Forge
 $ forge
 ```
 
@@ -31,7 +31,7 @@ Read more at the [Allinea DDT](debuggers/allinea-ddt/) page.
 Allinea Performance Reports characterize the performance of HPC application runs. After executing your application through the tool, a synthetic HTML report is generated automatically, containing information about several metrics along with clear behavior statements and hints to help you improve the efficiency of your runs. Our license is limited to 64 MPI processes.
 
 ```console
-$ module load PerformanceReports/6.0
+$ ml PerformanceReports/6.0
 $ perf-report mpirun -n 64 ./my_application argument01 argument02
 ```
 
@@ -42,7 +42,7 @@ Read more at the [Allinea Performance Reports](debuggers/allinea-performance-rep
 TotalView is a source- and machine-level debugger for multi-process, multi-threaded programs. Its wide range of tools provides ways to analyze, organize, and test programs, making it easy to isolate and identify problems in individual threads and processes in programs of great complexity.
 
 ```console
-$ module load totalview
+$ ml totalview
 $ totalview
 ```
 
@@ -53,7 +53,7 @@ Read more at the [Totalview](debuggers/total-view/) page.
 Vampir is a GUI trace analyzer for traces in OTF format.
 
 ```console
-$ module load Vampir/8.5.0
+$ ml Vampir/8.5.0
 $ vampir
 ```
 
diff --git a/docs.it4i/anselm/software/debuggers/intel-performance-counter-monitor.md b/docs.it4i/anselm/software/debuggers/intel-performance-counter-monitor.md
index 16b450213..b46b472b6 100644
--- a/docs.it4i/anselm/software/debuggers/intel-performance-counter-monitor.md
+++ b/docs.it4i/anselm/software/debuggers/intel-performance-counter-monitor.md
@@ -9,7 +9,7 @@ Intel PCM (Performance Counter Monitor) is a tool to monitor performance hardwar
 Currently installed version 2.6. To load the [module](../../environment-and-modules/), issue:
 
 ```console
-$ module load intelpcm
+$ ml intelpcm
 ```
 
 ## Command Line Tools
diff --git a/docs.it4i/anselm/software/debuggers/papi.md b/docs.it4i/anselm/software/debuggers/papi.md
index e4a4bae93..d03dd8354 100644
--- a/docs.it4i/anselm/software/debuggers/papi.md
+++ b/docs.it4i/anselm/software/debuggers/papi.md
@@ -13,7 +13,7 @@ PAPI can be used with parallel as well as serial programs.
 To use PAPI, load [module](../../environment-and-modules/) papi:
 
 ```console
-$ module load papi
+$ ml papi
 ```
 
 This will load the default version. Execute module avail papi for a list of installed versions.
@@ -196,13 +196,13 @@ $ ./matrix
 To use PAPI in [Intel Xeon Phi](../intel-xeon-phi/) native applications, you need to load module with " -mic" suffix, for example " papi/5.3.2-mic" :
 
 ```console
-$ module load papi/5.3.2-mic
+$ ml papi/5.3.2-mic
 ```
 
 Then, compile your application in the following way:
 
 ```console
-$ module load intel
+$ ml intel
 $ icc -mmic -Wl,-rpath,/apps/intel/composer_xe_2013.5.192/compiler/lib/mic matrix-mic.c -o matrix-mic -lpapi -lpfm
 ```
 
@@ -226,7 +226,7 @@ $ /apps/tools/papi/5.4.0-mic/bin/papi_native_avail
 To use PAPI in offload mode, you need to provide both host and MIC versions of PAPI:
 
 ```console
-$ module load papi/5.4.0
+$ ml papi/5.4.0
 $ icc matrix-offload.c -o matrix-offload -offload-option,mic,compiler,"-L$PAPI_HOME-mic/lib -lpapi" -lpapi
 ```
 
diff --git a/docs.it4i/anselm/software/debuggers/vampir.md b/docs.it4i/anselm/software/debuggers/vampir.md
index d9d44d847..1dfa23e7b 100644
--- a/docs.it4i/anselm/software/debuggers/vampir.md
+++ b/docs.it4i/anselm/software/debuggers/vampir.md
@@ -9,7 +9,7 @@ Vampir is a commercial trace analysis and visualization tool. It can work with t
 Version 8.5.0 is currently installed as module Vampir/8.5.0 :
 
 ```console
-$ module load Vampir/8.5.0
+$ ml Vampir/8.5.0
 $ vampir &
 ```
 
diff --git a/docs.it4i/anselm/software/intel-suite/intel-mkl.md b/docs.it4i/anselm/software/intel-suite/intel-mkl.md
index e09b8d2f3..d77d4d770 100644
--- a/docs.it4i/anselm/software/intel-suite/intel-mkl.md
+++ b/docs.it4i/anselm/software/intel-suite/intel-mkl.md
@@ -96,8 +96,8 @@ In this example, we compile and link the cblas_dgemm example, using LP64 interfa
 ### Example: MKL and GNU Compiler
 
 ```console
-$ module load gcc
-$ module load imkl
+$ ml gcc
+$ ml imkl
 $ cp -a $MKL_EXAMPLES/cblas /tmp/
 $ cd /tmp/cblas
 $ gcc -w source/cblas_dgemmx.c source/common_func.c -o cblas_dgemmx.x -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core -lgomp -lm
diff --git a/docs.it4i/anselm/software/numerical-languages/matlab_1314.md b/docs.it4i/anselm/software/numerical-languages/matlab_1314.md
index 69f54eb3b..1b72f5b4c 100644
--- a/docs.it4i/anselm/software/numerical-languages/matlab_1314.md
+++ b/docs.it4i/anselm/software/numerical-languages/matlab_1314.md
@@ -90,8 +90,8 @@ The second part of the command shows how to request all necessary licenses. In t
 Once the access to compute nodes is granted by PBS, user can load following modules and start Matlab:
 
 ```console
-    cn79$ module load matlab/R2013a-EDU
-    cn79$ module load impi/4.1.1.036
+    cn79$ ml matlab/R2013a-EDU
+    cn79$ ml impi/4.1.1.036
     cn79$ matlab &
 ```
 
diff --git a/docs.it4i/salomon/software/comsol/comsol-multiphysics.md b/docs.it4i/salomon/software/comsol/comsol-multiphysics.md
index 7279793d9..431294469 100644
--- a/docs.it4i/salomon/software/comsol/comsol-multiphysics.md
+++ b/docs.it4i/salomon/software/comsol/comsol-multiphysics.md
@@ -37,7 +37,7 @@ If user needs to prepare COMSOL jobs in the interactive mode it is recommend to
 ```console
 $ xhost +
 $ qsub -I -X -A PROJECT_ID -q qprod -l select=1:ppn=24
-$ module load COMSOL
+$ ml COMSOL
 $ comsol
 ```
 
@@ -79,8 +79,8 @@ LiveLink for MATLAB is available in both **EDU** and **COM** **variant** of the
 ```console
 $ xhost +
 $ qsub -I -X -A PROJECT_ID -q qexp -l select=1:ppn=24
-$ module load MATLAB
-$ module load COMSOL
+$ ml MATLAB
+$ ml COMSOL
 $ comsol server MATLAB
 ```
 
diff --git a/docs.it4i/salomon/software/debuggers/Introduction.md b/docs.it4i/salomon/software/debuggers/Introduction.md
index de8c00c66..4ce2fc77b 100644
--- a/docs.it4i/salomon/software/debuggers/Introduction.md
+++ b/docs.it4i/salomon/software/debuggers/Introduction.md
@@ -33,7 +33,7 @@ Read more at the [Allinea DDT](allinea-ddt/) page.
 Allinea Performance Reports characterize the performance of HPC application runs. After executing your application through the tool, a synthetic HTML report is generated automatically, containing information about several metrics along with clear behavior statements and hints to help you improve the efficiency of your runs. Our license is limited to 64 MPI processes.
 
 ```console
-$ module load PerformanceReports/6.0
+$ ml PerformanceReports/6.0
 $ perf-report mpirun -n 64 ./my_application argument01 argument02
 ```
 
@@ -55,7 +55,7 @@ Read more at the [Totalview](total-view/) page.
 Vampir is a GUI trace analyzer for traces in OTF format.
 
 ```console
-    $ module load Vampir/8.5.0
+    $ ml Vampir/8.5.0
     $ vampir
 ```
 
diff --git a/docs.it4i/salomon/software/debuggers/allinea-ddt.md b/docs.it4i/salomon/software/debuggers/allinea-ddt.md
index b73d21a8a..6e1f046f1 100644
--- a/docs.it4i/salomon/software/debuggers/allinea-ddt.md
+++ b/docs.it4i/salomon/software/debuggers/allinea-ddt.md
@@ -32,7 +32,7 @@ $ ml impi **or** ml OpenMPI/X.X.X-icc
 Load the Allinea DDT module:
 
 ```console
-$ module load Forge
+$ ml Forge
 ```
 
 Compile the code:
diff --git a/docs.it4i/salomon/software/debuggers/allinea-performance-reports.md b/docs.it4i/salomon/software/debuggers/allinea-performance-reports.md
index 2fcaee9f6..ead91a093 100644
--- a/docs.it4i/salomon/software/debuggers/allinea-performance-reports.md
+++ b/docs.it4i/salomon/software/debuggers/allinea-performance-reports.md
@@ -13,7 +13,7 @@ Our license is limited to 64 MPI processes.
 Allinea Performance Reports version 6.0 is available
 
 ```console
-$ module load PerformanceReports/6.0
+$ ml PerformanceReports/6.0
 ```
 
 The module sets up environment variables, required for using the Allinea Performance Reports.
diff --git a/docs.it4i/salomon/software/intel-suite/intel-mkl.md b/docs.it4i/salomon/software/intel-suite/intel-mkl.md
index 13bae44b6..6b54e0890 100644
--- a/docs.it4i/salomon/software/intel-suite/intel-mkl.md
+++ b/docs.it4i/salomon/software/intel-suite/intel-mkl.md
@@ -18,7 +18,7 @@ For details see the [Intel MKL Reference Manual](http://software.intel.com/sites
 Intel MKL version 11.2.3.187 is available on the cluster
 
 ```console
-$ module load imkl
+$ ml imkl
 ```
 
 The module sets up environment variables, required for linking and running mkl enabled applications. The most important variables are the $MKLROOT, $CPATH, $LD_LIBRARY_PATH and $MKL_EXAMPLES
@@ -64,8 +64,8 @@ Number of examples, demonstrating use of the Intel MKL library and its linking i
 ### Working With Examples
 
 ```console
-$ module load intel
-$ module load imkl
+$ ml intel
+$ ml imkl
 $ cp -a $MKL_EXAMPLES/cblas /tmp/
 $ cd /tmp/cblas
 $ make sointel64 function=cblas_dgemm
@@ -76,8 +76,8 @@ In this example, we compile, link and run the cblas_dgemm example, demonstrating
 ### Example: MKL and Intel Compiler
 
 ```console
-$ module load intel
-$ module load imkl
+$ ml intel
+$ ml imkl
 $ cp -a $MKL_EXAMPLES/cblas /tmp/
 $ cd /tmp/cblas
 $
@@ -96,8 +96,8 @@ In this example, we compile and link the cblas_dgemm example, using LP64 interfa
 ### Example: Intel MKL and GNU Compiler
 
 ```console
-$ module load GCC
-$ module load imkl
+$ ml GCC
+$ ml imkl
 $ cp -a $MKL_EXAMPLES/cblas /tmp/
 $ cd /tmp/cblas
 $ gcc -w source/cblas_dgemmx.c source/common_func.c -o cblas_dgemmx.x -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core -lgomp -lm
diff --git a/docs.it4i/salomon/software/intel-suite/intel-trace-analyzer-and-collector.md b/docs.it4i/salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
index ab8194b5a..9cae361ca 100644
--- a/docs.it4i/salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
+++ b/docs.it4i/salomon/software/intel-suite/intel-trace-analyzer-and-collector.md
@@ -24,7 +24,7 @@ The trace will be saved in file myapp.stf in the current directory.
 To view and analyze the trace, open ITAC GUI in a [graphical environment](../../../general/accessing-the-clusters/graphical-user-interface/x-window-system/):
 
 ```console
-$ module load itac/9.1.2.024
+$ ml itac/9.1.2.024
 $ traceanalyzer
 ```
 
diff --git a/docs.it4i/salomon/software/mpi/mpi.md b/docs.it4i/salomon/software/mpi/mpi.md
index 902fc4f7a..99f8745ac 100644
--- a/docs.it4i/salomon/software/mpi/mpi.md
+++ b/docs.it4i/salomon/software/mpi/mpi.md
@@ -44,7 +44,7 @@ In this example, we activate the latest OpenMPI with latest GNU compilers (OpenM
 To use OpenMPI with the intel compiler suite, use
 
 ```console
-$ module load iompi/2015.03
+$ ml iompi/2015.03
 ```
 
 In this example, the openmpi 1.8.6 using intel compilers is activated. It's used "iompi" toolchain.
diff --git a/docs.it4i/salomon/software/numerical-languages/introduction.md b/docs.it4i/salomon/software/numerical-languages/introduction.md
index 6f140ef9d..13ba67071 100644
--- a/docs.it4i/salomon/software/numerical-languages/introduction.md
+++ b/docs.it4i/salomon/software/numerical-languages/introduction.md
@@ -11,7 +11,7 @@ This section contains a collection of high-level interpreted languages, primaril
 MATLAB®^ is a high-level language and interactive environment for numerical computation, visualization, and programming.
 
 ```console
-$ module load MATLAB
+$ ml MATLAB
 $ matlab
 ```
 
@@ -22,7 +22,7 @@ Read more at the [Matlab page](matlab/).
 GNU Octave is a high-level interpreted language, primarily intended for numerical computations. The Octave language is quite similar to Matlab so that most programs are easily portable.
 
 ```console
-$ module load Octave
+$ ml Octave
 $ octave
 ```
 
@@ -33,7 +33,7 @@ Read more at the [Octave page](octave/).
 The R is an interpreted language and environment for statistical computing and graphics.
 
 ```console
-$ module load R
+$ ml R
 $ R
 ```
 
diff --git a/docs.it4i/salomon/software/numerical-languages/matlab.md b/docs.it4i/salomon/software/numerical-languages/matlab.md
index 31602bf0f..e08bf9099 100644
--- a/docs.it4i/salomon/software/numerical-languages/matlab.md
+++ b/docs.it4i/salomon/software/numerical-languages/matlab.md
@@ -10,7 +10,7 @@ Matlab is available in versions R2015a and R2015b. There are always two variants
 To load the latest version of Matlab load the module
 
 ```console
-$ module load MATLAB
+$ ml MATLAB
 ```
 
 By default the EDU variant is marked as default. If you need other version or variant, load the particular version. To obtain the list of available versions use
@@ -79,7 +79,7 @@ The second part of the command shows how to request all necessary licenses. In t
 Once the access to compute nodes is granted by PBS, user can load following modules and start Matlab:
 
 ```console
-    r1i0n17$ module load MATLAB/2015a-EDU
+    r1i0n17$ ml MATLAB/2015a-EDU
     r1i0n17$ matlab &
 ```
 
diff --git a/docs.it4i/salomon/software/numerical-languages/r.md b/docs.it4i/salomon/software/numerical-languages/r.md
index 1563b4e5a..693ef18f6 100644
--- a/docs.it4i/salomon/software/numerical-languages/r.md
+++ b/docs.it4i/salomon/software/numerical-languages/r.md
@@ -34,7 +34,7 @@ The R on Anselm is linked to highly optimized MKL mathematical library. This pro
 To run R interactively, using Rstudio GUI, log in with ssh -X parameter for X11 forwarding. Run rstudio:
 
 ```console
-$ module load Rstudio
+$ ml Rstudio
 $ rstudio
 ```
 
-- 
GitLab