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Commit 50709aa9 authored by Josef Hrabal's avatar Josef Hrabal
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Merge branch 'fix_menu_and_accesing' into 'master'

Fix menu and accesing

See merge request !202
parents 4e9435d4 6570b3a3
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5 merge requests!368Update prace.md to document the change from qprace to qprod as the default...,!367Update prace.md to document the change from qprace to qprod as the default...,!366Update prace.md to document the change from qprace to qprod as the default...,!323extended-acls-storage-section,!202Fix menu and accesing
......@@ -38,7 +38,7 @@ NCORES=`wc -l $PBS_NODEFILE |awk '{print $1}'`
/ansys_inc/v145/fluent/bin/fluent 3d -t$NCORES -cnf=$PBS_NODEFILE -g -i fluent.jou
```
Header of the pbs file (above) is common and description can be find on [this site](../../anselm/resources-allocation-policy/). [SVS FEM](http://www.svsfem.cz) recommends to utilize sources by keywords: nodes, ppn. These keywords allows to address directly the number of nodes (computers) and cores (ppn) which will be utilized in the job. Also the rest of code assumes such structure of allocated resources.
Header of the pbs file (above) is common and description can be find on [this site](../../../salomon/resources-allocation-policy/). [SVS FEM](http://www.svsfem.cz) recommends to utilize sources by keywords: nodes, ppn. These keywords allows to address directly the number of nodes (computers) and cores (ppn) which will be utilized in the job. Also the rest of code assumes such structure of allocated resources.
Working directory has to be created before sending pbs job into the queue. Input file should be in working directory or full path to input file has to be specified. Input file has to be defined by common Fluent journal file which is attached to the Fluent solver via parameter -i fluent.jou
......
......@@ -50,6 +50,6 @@ echo Machines: $hl
/ansys_inc/v145/ansys/bin/ansys145 -dis -lsdynampp i=input.k -machines $hl
```
Header of the PBS file (above) is common and description can be find on [this site](../../anselm/job-submission-and-execution/). [SVS FEM](http://www.svsfem.cz) recommends to utilize sources by keywords: nodes, ppn. These keywords allows to address directly the number of nodes (computers) and cores (ppn) which will be utilized in the job. Also the rest of code assumes such structure of allocated resources.
Header of the PBS file (above) is common and description can be find on [this site](../../../anselm/job-submission-and-execution/). [SVS FEM](http://www.svsfem.cz) recommends to utilize sources by keywords: nodes, ppn. These keywords allows to address directly the number of nodes (computers) and cores (ppn) which will be utilized in the job. Also the rest of code assumes such structure of allocated resources.
Working directory has to be created before sending PBS job into the queue. Input file should be in working directory or full path to input file has to be specified. Input file has to be defined by common LS-DYNA .**k** file which is attached to the ANSYS solver via parameter i=
......@@ -49,7 +49,7 @@ echo Machines: $hl
/ansys_inc/v145/ansys/bin/ansys145 -b -dis -p aa_r -i input.dat -o file.out -machines $hl -dir $WORK_DIR
```
Header of the PBS file (above) is common and description can be found on [this site](../../anselm/resources-allocation-policy/). [SVS FEM](http://www.svsfem.cz) recommends to utilize sources by keywords: nodes, ppn. These keywords allow to address directly the number of nodes (computers) and cores (ppn) which will be utilized in the job. Also the rest of code assumes such structure of allocated resources.
Header of the PBS file (above) is common and description can be found on [this site](../../../anselm/resources-allocation-policy/). [SVS FEM](http://www.svsfem.cz) recommends to utilize sources by keywords: nodes, ppn. These keywords allow to address directly the number of nodes (computers) and cores (ppn) which will be utilized in the job. Also the rest of code assumes such structure of allocated resources.
Working directory has to be created before sending PBS job into the queue. Input file should be in working directory or full path to input file has to be specified. Input file has to be defined by common APDL file which is attached to the ANSYS solver via parameter -i
......
......@@ -30,6 +30,6 @@ module load lsdyna
/apps/engineering/lsdyna/lsdyna700s i=input.k
```
Header of the PBS file (above) is common and description can be find on [this site](../../anselm/job-submission-and-execution/). [SVS FEM](http://www.svsfem.cz) recommends to utilize sources by keywords: nodes, ppn. These keywords allows to address directly the number of nodes (computers) and cores (ppn) which will be utilized in the job. Also the rest of code assumes such structure of allocated resources.
Header of the PBS file (above) is common and description can be find on [this site](../../../anselm/job-submission-and-execution/). [SVS FEM](http://www.svsfem.cz) recommends to utilize sources by keywords: nodes, ppn. These keywords allows to address directly the number of nodes (computers) and cores (ppn) which will be utilized in the job. Also the rest of code assumes such structure of allocated resources.
Working directory has to be created before sending PBS job into the queue. Input file should be in working directory or full path to input file has to be specified. Input file has to be defined by common LS-DYNA **.k** file which is attached to the LS-DYNA solver via parameter i=
......@@ -4,7 +4,7 @@
Programming Next Generation Supercomputers: GPI-2 is an API library for asynchronous interprocess, cross-node communication. It provides a flexible, scalable and fault tolerant interface for parallel applications.
The GPI-2 library ([www.gpi-site.com/gpi2/](http://www.gpi-site.com/gpi2/)) implements the GASPI specification (Global Address Space Programming Interface, [www.gaspi.de](http://www.gaspi.de/en/project.html)). GASPI is a Partitioned Global Address Space (PGAS) API. It aims at scalable, flexible and failure tolerant computing in massively parallel environments.
The GPI-2 library implements the GASPI specification (Global Address Space Programming Interface, [www.gaspi.de](http://www.gaspi.de/en/project.html)). GASPI is a Partitioned Global Address Space (PGAS) API. It aims at scalable, flexible and failure tolerant computing in massively parallel environments.
## Modules
......
......@@ -45,7 +45,7 @@ In /opt/modules/modulefiles/engineering you can see installed engineering softwa
lsdyna/7.x.x openfoam/2.2.1-gcc481-openmpi1.6.5-SP
```
For information how to use modules please [look here](../anselm/environment-and-modules/).
For information how to use modules please [look here](../../environment-and-modules/).
## Getting Started
......@@ -111,7 +111,7 @@ Job submission (example for Anselm):
$ qsub -A OPEN-0-0 -q qprod -l select=1:ncpus=16,walltime=03:00:00 test.sh
```
For information about job submission please [look here](../anselm/job-submission-and-execution/).
For information about job submission please [look here](../../anselm/job-submission-and-execution/).
## Running Applications in Parallel
......
......@@ -29,7 +29,7 @@ To launch the server, you must first allocate compute nodes, for example
$ qsub -I -q qprod -A OPEN-0-0 -l select=2
```
to launch an interactive session on 2 nodes. Refer to [Resource Allocation and Job Execution](../salomon/job-submission-and-execution/) for details.
to launch an interactive session on 2 nodes. Refer to [Resource Allocation and Job Execution](../../salomon/job-submission-and-execution/) for details.
After the interactive session is opened, load the ParaView module (following examples for Salomon, Anselm instructions in comments):
......
......@@ -15,17 +15,17 @@ copyright: Copyright (c) 2013-2018 IT4Innovations__VERSION__
pages:
- Home: index.md
- General:
- Applying for Resources: general/applying-for-resources.md
- Accessing the Clusters:
- Obtaining Login Credentials: general/obtaining-login-credentials/obtaining-login-credentials.md
- Applying for Resources: general/applying-for-resources.md
- Certificates FAQ: general/obtaining-login-credentials/certificates-faq.md
- Accessing the Clusters:
- Resource Allocation and Job Execution: general/resource_allocation_and_job_execution.md
- Connect to the Clusters:
- OpenSSH Keys (UNIX): general/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.md
- PuTTY (Windows): general/accessing-the-clusters/shell-access-and-data-transfer/putty.md
- X Window System: general/accessing-the-clusters/graphical-user-interface/x-window-system.md
- VNC: general/accessing-the-clusters/graphical-user-interface/vnc.md
- VPN Access: general/accessing-the-clusters/vpn-access.md
- Resource Allocation and Job Execution: general/resource_allocation_and_job_execution.md
- PRACE User Support: prace.md
- Salomon Cluster:
- Introduction: salomon/introduction.md
......
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