From 5d7afb5dca85abb2bbc1edecf0989871898b817f Mon Sep 17 00:00:00 2001 From: Branislav Jansik <branislav.jansik@vsb.cz> Date: Tue, 3 Aug 2021 14:51:20 +0200 Subject: [PATCH] Update singularity.md --- docs.it4i/software/tools/singularity.md | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/docs.it4i/software/tools/singularity.md b/docs.it4i/software/tools/singularity.md index 0c5439913..721b8369e 100644 --- a/docs.it4i/software/tools/singularity.md +++ b/docs.it4i/software/tools/singularity.md @@ -68,6 +68,31 @@ Singularity container built: ubuntu.img Cleaning up... ``` +alternatively, you can create your own docker image and import it to singularity. +For example, we show how to create and run ubuntu docker image with gvim installed: + +```console +your_local_machine $ docker pull ubuntu +your_local_machine $ docker run --rm -it ubuntu bash +# apt update +# apt install vim-gtk +your_local_machine $ docker ps -a +your_local_machine $ docker commit 837a575cf8dc +your_local_machine $ docker image ls +your_local_machine $ docker tag 4dd97cefde62 ubuntu_gvim +your_local_machine $ docker save -o ubuntu_gvim.tar 4dd97cefde62 ubuntu_gvim +``` + +copy the `ubuntu_gvim.tar` archive to IT4I supercomputers, convert to Singularity image and run: + +```console +$ ml Singularity +$ singularity build ubuntu_givm.img docker-archive://ubuntu_gvim.tar +$ singularity shell -B /usr/user/$ID ubuntu_gvim.img +``` + +Note the bind to `/usr/user/$ID` directory. + ## Launching the Container The interactive shell can be invoked by the `singularity shell` command. This is useful for development purposes. Use the `-w | --writable` option to make changes inside the container permanent. -- GitLab