From 6d6c5419a9e5143895353a1f5b45bdca8de6529b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Pavel=20Jir=C3=A1sek?= <pavel.jirasek@vsb.cz>
Date: Thu, 2 Feb 2017 11:38:57 +0100
Subject: [PATCH] Table typo
---
.../anselm/software/omics-master/overview.md | 20 +++++++++----------
1 file changed, 10 insertions(+), 10 deletions(-)
diff --git a/docs.it4i/anselm/software/omics-master/overview.md b/docs.it4i/anselm/software/omics-master/overview.md
index 7a827c97b..3d6a9ba0a 100644
--- a/docs.it4i/anselm/software/omics-master/overview.md
+++ b/docs.it4i/anselm/software/omics-master/overview.md
@@ -63,19 +63,19 @@ The SAM format (1) consists of one header section and one alignment section. The
In SAM, each alignment line has 11 mandatory fields and a variable number of optional fields. The mandatory fields are briefly described in Table 1. They must be present but their value can be a â€\’ or a zero (depending on the field) if the
corresponding information is unavailable.
-| No. | Name | Description |
+| No. | Name | Description |
| --------- | ---------- | ----------------------------------------------------- |
| 1 | QNAME | Query NAME of the read or the read pai |
| 2 | FLAG | Bitwise FLAG (pairing,strand,mate strand,etc.) |
-| 3 | RNAME | <p>Reference sequence NAME |
-| 4 | POS | <p>1-Based leftmost POSition of clipped alignment |
-| 5 | MAPQ | <p>MAPping Quality (Phred-scaled) |
-| 6 | CIGAR | <p>Extended CIGAR string (operations:MIDNSHP) |
-| 7 | MRNM | <p>Mate REference NaMe ('=' if same RNAME) |
-| 8 | MPOS | <p>1-Based leftmost Mate POSition |
-| 9 | ISIZE | <p>Inferred Insert SIZE |
-| 10 | SEQ | <p>Query SEQuence on the same strand as the reference |
-| 11 | QUAL | <p>Query QUALity (ASCII-33=Phred base quality) |
+| 3 | RNAME | Reference sequence NAME |
+| 4 | POS | 1-Based leftmost POSition of clipped alignment |
+| 5 | MAPQ | MAPping Quality (Phred-scaled) |
+| 6 | CIGAR | Extended CIGAR string (operations:MIDNSHP) |
+| 7 | MRNM | Mate REference NaMe ('=' if same RNAME) |
+| 8 | MPOS | 1-Based leftmost Mate POSition |
+| 9 | ISIZE | Inferred Insert SIZE |
+| 10 | SEQ | Query SEQuence on the same strand as the reference |
+| 11 | QUAL | Query QUALity (ASCII-33=Phred base quality) |
Table 1 . Mandatory fields in the SAM format.
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