diff --git a/docs.it4i/anselm-cluster-documentation/software/index.md b/docs.it4i/anselm-cluster-documentation/software/index.md deleted file mode 100644 index 760656e5b60f6d3036e5b5dfd122f0b39717ba7c..0000000000000000000000000000000000000000 --- a/docs.it4i/anselm-cluster-documentation/software/index.md +++ /dev/null @@ -1,86 +0,0 @@ -# Anselm Cluster Software - -## [Modules](../../modules-anselm) - -- List of available modules - ## [COMSOL](comsol-multiphysics) -- A finite element analysis, solver and Simulation software - ## [ParaView](paraview) -- An open-source, multi-platform data analysis and visualization application - ## [Compilers](compilers) -- Available compilers, including GNU, INTEL and UPC compilers - ## [NVIDIA CUDA](nvidia-cuda) -- A guide to NVIDIA CUDA programming and GPU usage - ## [GPI-2](gpi2) -- A library that implements the GASPI specification - ## [OpenFOAM](openfoam) -- A free, open source CFD software package - ## [ISV Licenses](isv_licenses) -- A guide to managing Independent Software Vendor licenses - ## [Intel Xeon Phi](intel-xeon-phi) -- A guide to Intel Xeon Phi usage - ## [Virtualization](kvirtualization) - ## [Java](java) -- Java on ANSELM - ## [Operating System](operating-system) -- The operating system, deployed on ANSELM - ## Intel Suite -- The Intel Parallel Studio XE - ### [Introduction](intel-suite/introduction) - ### [Intel MKL](intel-suite/intel-mkl) - ### [Intel Compilers](intel-suite/intel-compilers) - ### [Intel IPP](intel-suite/intel-integrated-performance-primitives) - ### [Intel TBB](intel-suite/intel-tbb) - ### [Intel Debugger](intel-suite/intel-debugger) - ## MPI -- Message Passing Interface libraries - ### [Introduction](mpi/mpi) - ### [MPI4Py (MPI for Python)](mpi/mpi4py-mpi-for-python) - ### [Running OpenMPI](mpi/Running_OpenMPI) - ### [Running MPICH2](mpi/running-mpich2) - ## Numerical Libraries -- Libraries for numerical computations - ### [Intel numerical libraries](numerical-libraries/intel-numerical-libraries) - ### [PETSc](numerical-libraries/petsc) - ### [Trilinos](numerical-libraries/trilinos) - ### [FFTW](numerical-libraries/fftw) - ### [GSL](numerical-libraries/gsl) - ### [MAGMA for Intel Xeon Phi](numerical-libraries/magma-for-intel-xeon-phi) - ### [HDF5](numerical-libraries/hdf5) - ## Omics Master - ### [Diagnostic component (TEAM)](omics-master/diagnostic-component-team) - ### [Prioritization component (BiERapp)](omics-master/priorization-component-bierapp) - ### [Overview](omics-master/overview) - ## Debuggers -- A collection of development tools - ### [Valgrind](debuggers/valgrind) - ### [PAPI](debuggers/papi) - ### [Allinea Forge (DDT,MAP)](debuggers/allinea-ddt) - ### [Total View](debuggers/total-view) - ### [CUBE](debuggers/cube) - ### [Intel VTune Amplifier](debuggers/intel-vtune-amplifier) - ### [VNC](debuggers/debuggers) - ### [Scalasca](debuggers/scalasca) - ### [Score-P](debuggers/score-p) - ### [Intel Performance Counter Monitor](debuggers/intel-performance-counter-monitor) - ### [Allinea Performance Reports](debuggers/allinea-performance-reports) - ### [Vampir](debuggers/vampir) - ## Numerical Languages -- Interpreted languages for numerical computations - ### [Introduction](numerical-languages/introduction) - ### [R](numerical-languages/r) - ### [MATLAB 2013-2014](numerical-languages/matlab_1314) - ### [MATLAB](numerical-languages/matlab) - ### [Octave](numerical-languages/octave) - ## Chemistry -- Tools for computational chemistry - ### [Molpro](chemistry/molpro) - ### [NWChem](chemistry/nwchem) - ## ANSYS -- An engineering simulation software - ### [Introduction](ansys/ansys) - ### [ANSYS CFX](ansys/ansys-cfx) - ### [ANSYS LS-DYNA](ansys/ansys-ls-dyna) - ### [ANSYS MAPDL](ansys/ansys-mechanical-apdl) - ### [LS-DYNA](ansys/ls-dyna) - ### [ANSYS Fluent](ansys/ansys-fluent) diff --git a/docs.it4i/salomon/software/index.md b/docs.it4i/salomon/software/index.md deleted file mode 100644 index cebebebfeac0e20cc3679a03176f77e03c72af11..0000000000000000000000000000000000000000 --- a/docs.it4i/salomon/software/index.md +++ /dev/null @@ -1,64 +0,0 @@ -# Salomon Cluster Software - -## [Modules](../../modules-salomon) - -- List of Available Modules - ## [Compilers](compilers) -- Available compilers, including GNU, INTEL and UPC compilers - ## [Intel Xeon Phi](intel-xeon-phi) -- A guide to Intel Xeon Phi usage - ## [Java](java) -- Java on the cluster - ## [Operating System](operating-system) -- The operating system, deployed on Salomon cluster - ## Intel Suite -- The Intel Parallel Studio XE - ### [Introduction](intel-suite/intel-parallel-studio-introduction) - ### [Intel MKL](intel-suite/intel-mkl) - ### [Intel Compilers](intel-suite/intel-compilers) - ### [Intel IPP](intel-suite/intel-integrated-performance-primitives) - ### [Intel TBB](intel-suite/intel-tbb) - ### [Intel Debugger](intel-suite/intel-debugger) - ### [Intel Inspector](intel-suite/intel-inspector) - ### [Intel Trace Analyzer and Collector](intel-suite/intel-trace-analyzer-and-collector) - ### [Intel Advisor](intel-suite/intel-advisor) - ## MPI -- Message Passing Interface libraries - ### [Introduction](mpi/mpi) - ### [MPI4Py (MPI for Python)](mpi/mpi4py-mpi-for-python) - ### [Running Open MPI](mpi/Running_OpenMPI) - ## Debuggers -- A collection of development tools - ### [Introduction](debuggers/Introduction) - ### [Valgrind](debuggers/valgrind) - ### [Allinea Forge (DDT,MAP)](debuggers/allinea-ddt) - ### [Total View](debuggers/total-view) - ### [Intel VTune Amplifier XE](debuggers/intel-vtune-amplifier) - ### [Aislinn](debuggers/aislinn) - ### [Allinea Performance Reports](debuggers/allinea-performance-reports) - ### [Vampir](debuggers/vampir) - ## Numerical Languages -- Interpreted languages for numerical computations - ### [Introduction](numerical-languages/introduction) - ### [R](numerical-languages/r) - ### [MATLAB](numerical-languages/matlab) - ### [Octave](numerical-languages/octave) - ## Chemistry -- Tools for computational chemistry - ### [Molpro](chemistry/molpro) - ### [Phono3py](chemistry/phono3py) - ### [NWChem](chemistry/nwchem) - ## COMSOL -- A finite element analysis, solver and Simulation software - ### [COMSOL](comsol/comsol-multiphysics) - ### [Licensing and Available Versions](comsol/licensing-and-available-versions) - ## ANSYS -- An engineering simulation software - ### [Introduction](ansys/ansys) - ### [Workbench](ansys/workbench) - ### [ANSYS CFX](ansys/ansys-cfx) - ### [ANSYS LS-DYNA](ansys/ansys-ls-dyna) - ### [ANSYS MAPDL](ansys/ansys-mechanical-apdl) - ### [ANSYS Fluent](ansys/ansys-fluent) - ### [Setting license preferences](ansys/licensing) - ### [Licensing and Available Versions](ansys/setting-license-preferences)