From b6e09bb220613328694a74011823222a1fe59300 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Krup=C4=8D=C3=ADk?= <lukas.krupcik@vsb.cz>
Date: Tue, 24 Jan 2017 12:51:11 +0100
Subject: [PATCH] oprava podle mmokrejs
---
docs.it4i/software/{bio-gentoo.md => bioinformatics.md} | 2 +-
mkdocs.yml | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
rename docs.it4i/software/{bio-gentoo.md => bioinformatics.md} (89%)
diff --git a/docs.it4i/software/bio-gentoo.md b/docs.it4i/software/bioinformatics.md
similarity index 89%
rename from docs.it4i/software/bio-gentoo.md
rename to docs.it4i/software/bioinformatics.md
index c96a6bf06..941acad22 100644
--- a/docs.it4i/software/bio-gentoo.md
+++ b/docs.it4i/software/bioinformatics.md
@@ -4,7 +4,7 @@ Bioinformatics Applications
Introduction
------------
-In addition to the many applications available through modules (deployed through EasyBuild packaging system) we provide an alternative source of applications on our clusters inferred from Gentoo Linux ( www.gentoo.org ). The user's environment is setup through a script which returns a bash instance to the user (you can think of it a starting a whole virtual machine but inside your current namespace) . The applications were optimized by gcc compiler for the SandyBridge and IvyBridge platforms. The binaries use paths from /apps/gentoo prefix to find the required runtime dependencies, config files, etc. The Gentoo Linux is a standalone installation not even relying on the glibc provided by host operating system (Redhat). The trick which allowed us to install Gentoo Linux on the host Redhat system is called Gentoo::RAP and uses a modified loader with a hardcoded path ( https://wiki.gentoo.org/wiki/Prefix/libc ).
+In addition to the many applications available through modules (deployed through EasyBuild packaging system) we provide an alternative source of applications on our clusters inferred from [Gentoo Linux](www.gentoo.org). The user's environment is setup through a script which returns a bash instance to the user (you can think of it a starting a whole virtual machine but inside your current namespace) . The applications were optimized by gcc compiler for the SandyBridge and IvyBridge platforms. The binaries use paths from /apps/gentoo prefix to find the required runtime dependencies, config files, etc. The Gentoo Linux is a standalone installation not even relying on the glibc provided by host operating system (Redhat). The trick which allowed us to install Gentoo Linux on the host Redhat system is called Gentoo::RAP and uses a modified loader with a hardcoded path ([links](https://wiki.gentoo.org/wiki/Prefix/libc)).
Starting the environment
diff --git a/mkdocs.yml b/mkdocs.yml
index 5a9bf6a77..759e52bbb 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -54,7 +54,7 @@ pages:
- ANSYS MAPDL: anselm-cluster-documentation/software/ansys/ansys-mechanical-apdl.md
- LS-DYNA: anselm-cluster-documentation/software/ansys/ls-dyna.md
- 'Bioinformatics':
- - Bioinformatics Applications: software/bio-gentoo.md
+ - Bioinformatics Applications: software/bioinformatics.md
- 'Debuggers':
- Allinea Forge (DDT,MAP): anselm-cluster-documentation/software/debuggers/allinea-ddt.md
- Allinea Performance Reports: anselm-cluster-documentation/software/debuggers/allinea-performance-reports.md
@@ -141,7 +141,7 @@ pages:
- Setting License Preferences: salomon/software/ansys/licensing.md
- Licensing and Available Versions: salomon/software/ansys/setting-license-preferences.md
- 'Bioinformatics':
- - Bioinformatics Applications: software/bio-gentoo.md
+ - Bioinformatics Applications: software/bioinformatics.md
- 'Chemistry':
- Molpro: salomon/software/chemistry/molpro.md
- NWChem: salomon/software/chemistry/nwchem.md
--
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