diff --git a/README.md b/README.md
deleted file mode 100644
index 80ec257979b4c17bdac05c421b15d7ff3124ecd7..0000000000000000000000000000000000000000
--- a/README.md
+++ /dev/null
@@ -1,42 +0,0 @@
-# Převod html dokumentace do md formátu
-
-## CĂ­l
-
-Výsledkem projektu by měl být skript pro stažení a převod stávající dokumentace na docs.it4i.cz do md formátu
-
-## Základní požadavky
-
-* stažení celé adresářové struktury docs.it4i.cz
-* konverze html souborĹŻ na md soubory
-* zachování stejného formatování jako na webu
-
-## Postup
-
-Pro svou práci si naklonujete Gitem repozitář do svého pracovního adresáře.
-
-### Funkce skriptu
-
-StaĹľenĂ­ souborĹŻ:
-
-```bash
-html_md.sh -w
-```
-
-Konverze html do md
-
-```bash
-html_md.sh -c
-```
-
-Přehled o souborech (složka info)
-
-```bash
-html_md.sh -i
-```
-
-Smazání html/md souborů
-
-```bash
-html_md.sh -d -html
-html_md.sh -d -md
-```
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diff --git a/docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/introduction.md b/converted/docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/introduction.md
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index e1be2fecc787be8695c8d95d6e7d5d0afb682b35..bde0cbf9be729d4cfe36c733753f35cefe93c855 100644
--- a/docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/introduction.md
+++ b/converted/docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/introduction.md
@@ -13,7 +13,7 @@ supercomputer. Extensive informations about PBS Pro can be found in the
 [official documentation
 here](../../pbspro-documentation.html), especially in
 the [PBS Pro User's
-Guide](../../pbspro-documentation/pbspro-users-guide.1).
+Guide](https://docs.it4i.cz/pbspro-documentation/pbspro-users-guide).
 
 Resources Allocation Policy
 ---------------------------
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diff --git a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/vnc.md b/converted/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc.md
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index 6fe47bc4ef3b22fd3dd1309a8cc35c87c2e0a4d9..bea668234e17b946c2363a5dc035332ff6ebedc0 100644
--- a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/vnc.md
+++ b/converted/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc.md
@@ -199,7 +199,7 @@ session](../../../../salomon/gnome_screen.jpg/@@images/7758b792-24eb-48dc-bf72-6
 Open Screensaver preferences dialog:
 
 [![Screensaver
-Preferences](gdmscreensaver.png/@@images/8e80a92f-f691-4d92-8e62-344128dcc00b.png "Screensaver Preferences")](../../../../salomon/gnome_screen.jpg.1)
+Preferences](gdmscreensaver.png/@@images/44048cfa-e854-4cb4-902b-c173821c2db1.png "Screensaver Preferences")](../../../../salomon/gnome_screen.jpg.1)
 
 Uncheck both options below the slider:
 
@@ -246,7 +246,7 @@ may be used to run the GUI applications on compute nodes. However, for
 Open a Terminal (Applications -> System Tools -> Terminal). Run
 all the next commands in the terminal.
 
-[![gnome-terminal.png](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gnome-terminal.png/@@images/b44f5d8c-156d-4041-9bb0-973996413834.png "gnome-terminal.png")](gnome-terminal.png)
+[![gnome-terminal.png](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gnome-terminal.png/@@images/dc0f0207-c614-49be-9cfb-905a523c5a39.png "gnome-terminal.png")](gnome-terminal.png)
 
 Allow incoming X11 graphics from the compute nodes at the login node:
 
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diff --git a/docs.it4i.cz/salomon/uv-2000/@@images/04ce7514-8d27-4cdb-bf0f-45d875c75df0.jpeg b/converted/docs.it4i.cz/salomon/04ce7514-8d27-4cdb-bf0f-45d875c75df0.jpeg
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diff --git a/docs.it4i.cz/salomon/copy_of_vpn_web_install_3.png b/converted/docs.it4i.cz/salomon/copy_of_vpn_web_install_3.png
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diff --git a/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IBsingleplanetopologyAcceleratednodessmall.png b/converted/docs.it4i.cz/salomon/network-1/IBsingleplanetopologyAcceleratednodessmall.png
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diff --git a/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IBsingleplanetopologyICEXMcellsmall.png b/converted/docs.it4i.cz/salomon/network-1/IBsingleplanetopologyICEXMcellsmall.png
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diff --git a/docs.it4i.cz/salomon/network-1/Salomon_IB_topology.png b/converted/docs.it4i.cz/salomon/network-1/Salomon_IB_topology.png
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rename from docs.it4i.cz/salomon/network-1/Salomon_IB_topology.png
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diff --git a/docs.it4i.cz/salomon/network-1/ib-single-plane-topology.md b/converted/docs.it4i.cz/salomon/network-1/ib-single-plane-topology.md
similarity index 83%
rename from docs.it4i.cz/salomon/network-1/ib-single-plane-topology.md
rename to converted/docs.it4i.cz/salomon/network-1/ib-single-plane-topology.md
index c803b9ae8f6482b9df56564419e5e2c3e951036c..d5733c512eea7970eceda9b26c5fbea02d13cffe 100644
--- a/docs.it4i.cz/salomon/network-1/ib-single-plane-topology.md
+++ b/converted/docs.it4i.cz/salomon/network-1/ib-single-plane-topology.md
@@ -24,7 +24,7 @@ with connections as follows:
 
 Each colour in each physical IRU represents one dual-switch ASIC switch.
 
-[![Mcell](ib-single-plane-topology/IBsingleplanetopologyICEXMcellsmall.png "Mcell")](ib-single-plane-topology/IB%20single-plane%20topology%20-%20ICEX%20Mcell.pdf)
+[![Mcell](ib-single-plane-topology/IBsingleplanetopologyICEXMcellsmall.png "Mcell")](https://docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB%20single-plane%20topology%20-%20ICEX%20Mcell.pdf)
 
  
 
@@ -43,7 +43,7 @@ Topology](Salomon_IB_topology.png):
 -   Racks 33, 34, 35, 36, 37, 38 are equivalent to one Mcell rack.
 
 [![Accelerated
-nodes](ib-single-plane-topology/IBsingleplanetopologyAcceleratednodessmall.png "Accelerated nodes")](ib-single-plane-topology/IB%20single-plane%20topology%20-%20Accelerated%20nodes.pdf)
+nodes](ib-single-plane-topology/IBsingleplanetopologyAcceleratednodessmall.png "Accelerated nodes")](https://docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB%20single-plane%20topology%20-%20Accelerated%20nodes.pdf)
 
  
 
diff --git a/docs.it4i.cz/salomon/network-1/network.md b/converted/docs.it4i.cz/salomon/network-1/network.md
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diff --git a/docs.it4i.cz/salomon/prace.md b/converted/docs.it4i.cz/salomon/prace.md
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diff --git a/docs.it4i.cz/salomon/resource-allocation-and-job-execution/capacity-computing.md b/converted/docs.it4i.cz/salomon/resource-allocation-and-job-execution/capacity-computing.md
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diff --git a/docs.it4i.cz/salomon/resource-allocation-and-job-execution/introduction.md b/converted/docs.it4i.cz/salomon/resource-allocation-and-job-execution/introduction.md
similarity index 96%
rename from docs.it4i.cz/salomon/resource-allocation-and-job-execution/introduction.md
rename to converted/docs.it4i.cz/salomon/resource-allocation-and-job-execution/introduction.md
index e9b611c2ac6b1b04df3d297a302671fb45662e40..4332b2fd9c3f428d36cc40e2f7f18509214283f7 100644
--- a/docs.it4i.cz/salomon/resource-allocation-and-job-execution/introduction.md
+++ b/converted/docs.it4i.cz/salomon/resource-allocation-and-job-execution/introduction.md
@@ -14,7 +14,7 @@ across the supercomputer. Extensive informations about PBS Pro can be
 found in the [official documentation
 here](../../pbspro-documentation.html), especially in
 the [PBS Pro User's
-Guide](../../pbspro-documentation/pbspro-users-guide.1).
+Guide](https://docs.it4i.cz/pbspro-documentation/pbspro-users-guide).
 
 Resources Allocation Policy
 ---------------------------
diff --git a/docs.it4i.cz/salomon/resource-allocation-and-job-execution/job-priority.md b/converted/docs.it4i.cz/salomon/resource-allocation-and-job-execution/job-priority.md
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diff --git a/docs.it4i.cz/salomon/resource-allocation-and-job-execution/resources-allocation-policy.md b/converted/docs.it4i.cz/salomon/resource-allocation-and-job-execution/resources-allocation-policy.md
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diff --git a/docs.it4i.cz/salomon/resource-allocation-and-job-execution/rswebsalomon.png b/converted/docs.it4i.cz/salomon/resource-allocation-and-job-execution/rswebsalomon.png
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diff --git a/docs.it4i.cz/salomon/software/comsol/comsol-multiphysics.md b/converted/docs.it4i.cz/salomon/software/comsol/comsol-multiphysics.md
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diff --git a/docs.it4i.cz/salomon/software/comsol/licensing-and-available-versions.md b/converted/docs.it4i.cz/salomon/software/comsol/licensing-and-available-versions.md
similarity index 100%
rename from docs.it4i.cz/salomon/software/comsol/licensing-and-available-versions.md
rename to converted/docs.it4i.cz/salomon/software/comsol/licensing-and-available-versions.md
diff --git a/docs.it4i.cz/salomon/software/debuggers.1.md b/converted/docs.it4i.cz/salomon/software/debuggers.md
similarity index 99%
rename from docs.it4i.cz/salomon/software/debuggers.1.md
rename to converted/docs.it4i.cz/salomon/software/debuggers.md
index 7ad373d5c02375228717a28897742e48467155f0..67defc2e2cefdc7e3226b6d3e876b10c67953a32 100644
--- a/docs.it4i.cz/salomon/software/debuggers.1.md
+++ b/converted/docs.it4i.cz/salomon/software/debuggers.md
@@ -92,3 +92,4 @@ Read more at the [Vampir](debuggers/vampir.html) page.
 
 
 
+
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diff --git a/docs.it4i.cz/anselm-cluster-documentation.md b/docs.it4i.cz/anselm-cluster-documentation.md
deleted file mode 100644
index 7d0f0258c0eec28b115e6619971e701ea4997fac..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation.md
+++ /dev/null
@@ -1,42 +0,0 @@
-Introduction 
-============
-
-
-
-  
-
-Welcome to Anselm supercomputer cluster. The Anselm cluster consists of
-209 compute nodes, totaling 3344 compute cores with 15TB RAM and giving
-over 94 Tflop/s theoretical peak performance. Each node is a <span
-class="WYSIWYG_LINK">powerful</span> x86-64 computer, equipped with 16
-cores, at least 64GB RAM, and 500GB harddrive. Nodes are interconnected
-by fully non-blocking fat-tree Infiniband network and equipped with
-Intel Sandy Bridge processors. A few nodes are also equipped with NVIDIA
-Kepler GPU or Intel Xeon Phi MIC accelerators. Read more in [Hardware
-Overview](anselm-cluster-documentation/hardware-overview.html).
-
-The cluster runs bullx Linux [<span
-class="WYSIWYG_LINK"></span>](http://www.bull.com/bullx-logiciels/systeme-exploitation.html)[operating
-system](anselm-cluster-documentation/software/operating-system.html),
-which is compatible with the <span class="WYSIWYG_LINK">RedHat</span>
-[<span class="WYSIWYG_LINK">Linux
-family.</span>](http://upload.wikimedia.org/wikipedia/commons/1/1b/Linux_Distribution_Timeline.svg)
-We have installed a wide range of
-[software](anselm-cluster-documentation/software.1.html)
-packages targeted at different scientific domains. These packages are
-accessible via the [modules
-environment](anselm-cluster-documentation/environment-and-modules.html).
-
-User data shared file-system (HOME, 320TB) and job data shared
-file-system (SCRATCH, 146TB) are available to users.
-
-The PBS Professional workload manager provides [computing resources
-allocations and job
-execution](anselm-cluster-documentation/resource-allocation-and-job-execution.html).
-
-Read more on how to [apply for
-resources](get-started-with-it4innovations/applying-for-resources.html),
-[obtain login
-credentials,](get-started-with-it4innovations/obtaining-login-credentials.html)
-and [access the
-cluster](anselm-cluster-documentation/accessing-the-cluster.html).
diff --git a/docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster.md b/docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster.md
deleted file mode 100644
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--- a/docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster.md
+++ /dev/null
@@ -1,141 +0,0 @@
-Shell access and data transfer 
-==============================
-
-
-
-  
-
-Interactive Login
------------------
-
-The Anselm cluster is accessed by SSH protocol via login nodes login1
-and login2 at address anselm.it4i.cz. The login nodes may be addressed
-specifically, by prepending the login node name to the address.
-
-  Login address           Port   Protocol   Login node
-  ----------------------- ------ ---------- ----------------------------------------------
-  anselm.it4i.cz          22     ssh        round-robin DNS record for login1 and login2
-  login1.anselm.it4i.cz   22     ssh        login1
-  login2.anselm.it4i.cz   22     ssh        login2
-
-The authentication is by the [private
-key](../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.html)
-
-Please verify SSH fingerprints during the first logon. They are
-identical on all login nodes:<span class="monospace">
-29:b3:f4:64:b0:73:f5:6f:a7:85:0f:e0:0d:be:76:bf (DSA)
-d4:6f:5c:18:f4:3f:70:ef:bc:fc:cc:2b:fd:13:36:b7 (RSA)</span>
-
- 
-
-Private keys authentication:
-
-On **Linux** or **Mac**, use
-
-``` 
-local $ ssh -i /path/to/id_rsa username@anselm.it4i.cz
-```
-
-If you see warning message "UNPROTECTED PRIVATE KEY FILE!", use this
-command to set lower permissions to private key file.
-
-``` 
-local $ chmod 600 /path/to/id_rsa
-```
-
-On **Windows**, use [PuTTY ssh
-client](../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/putty.html).
-
-After logging in, you will see the command prompt:
-
-                                                _
-                           /                  | |
-                          /     _ __  ___  ___| |_ __ ___
-                         / /  | '_ / __|/ _  | '_ ` _ 
-                        / ____ | | | __   __/ | | | | | |
-                       /_/    __| |_|___/___|_|_| |_| |_|
-
-
-                            http://www.it4i.cz/?lang=en
-
-
-    Last login: Tue Jul  9 15:57:38 2013 from your-host.example.com
-    [username@login2.anselm ~]$
-
-The environment is **not** shared between login nodes, except for
-[shared
-filesystems](accessing-the-cluster/storage-1.html#section-1).
-
-Data Transfer
--------------
-
-Data in and out of the system may be transferred by the
-[scp](http://en.wikipedia.org/wiki/Secure_copy) and sftp
-protocols. <span class="discreet">(Not available yet.) In case large
-volumes of data are transferred, use dedicated data mover node
-dm1.anselm.it4i.cz for increased performance.</span>
-
-  Address                                            Port                               Protocol
-  -------------------------------------------------- ---------------------------------- -----------------------------------------
-  anselm.it4i.cz                                     22                                 scp, sftp
-  login1.anselm.it4i.cz                              22                                 scp, sftp
-  login2.anselm.it4i.cz                              22                                 scp, sftp
-  <span class="discreet">dm1.anselm.it4i.cz</span>   <span class="discreet">22</span>   <span class="discreet">scp, sftp</span>
-
- The authentication is by the [private
-key](../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.html)
-
-Data transfer rates up to **160MB/s** can be achieved with scp or sftp.
-1TB may be transferred in 1:50h.
-
-To achieve 160MB/s transfer rates, the end user must be connected by 10G
-line all the way to IT4Innovations and use computer with fast processor
-for the transfer. Using Gigabit ethernet connection, up to 110MB/s may
-be expected.  Fast cipher (aes128-ctr) should be used.
-
-If you experience degraded data transfer performance, consult your local
-network provider.
-
-On linux or Mac, use scp or sftp client to transfer the data to Anselm:
-
-``` 
-local $ scp -i /path/to/id_rsa my-local-file username@anselm.it4i.cz:directory/file
-```
-
-``` 
-local $ scp -i /path/to/id_rsa -r my-local-dir username@anselm.it4i.cz:directory
-```
-
-> or
-
-``` 
-local $ sftp -o IdentityFile=/path/to/id_rsa username@anselm.it4i.cz
-```
-
-Very convenient way to transfer files in and out of the Anselm computer
-is via the fuse filesystem
-[sshfs](http://linux.die.net/man/1/sshfs)
-
-``` 
-local $ sshfs -o IdentityFile=/path/to/id_rsa username@anselm.it4i.cz:. mountpoint
-```
-
-Using sshfs, the users Anselm home directory will be mounted on your
-local computer, just like an external disk.
-
-Learn more on ssh, scp and sshfs by reading the manpages
-
-``` 
-$ man ssh
-$ man scp
-$ man sshfs
-```
-
-On Windows, use [WinSCP
-client](http://winscp.net/eng/download.php) to transfer
-the data. The [win-sshfs
-client](http://code.google.com/p/win-sshfs/) provides a
-way to mount the Anselm filesystems directly as an external disc.
-
-More information about the shared file systems is available
-[here](storage.html).
diff --git a/docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/storage-1.md b/docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/storage-1.md
deleted file mode 100644
index cb600cb9450ae40401fa6c66e6b11b831a625d47..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/storage-1.md
+++ /dev/null
@@ -1,509 +0,0 @@
-Storage 
-=======
-
-
-
-  
-
-There are two main shared file systems on Anselm cluster, the
-[HOME](../storage.html#home) and
-[SCRATCH](../storage.html#scratch). All login and compute
-nodes may access same data on shared filesystems. Compute nodes are also
-equipped with local (non-shared) scratch, ramdisk and tmp filesystems.
-
-Archiving
----------
-
-Please don't use shared filesystems as a backup for large amount of data
-or long-term archiving mean. The academic staff and students of research
-institutions in the Czech Republic can use [CESNET storage
-service](../storage-1/cesnet-data-storage.html), which
-is available via SSHFS.
-
-Shared Filesystems
-------------------
-
-Anselm computer provides two main shared filesystems, the [HOME
-filesystem](../storage.html#home) and the [SCRATCH
-filesystem](../storage.html#scratch). Both HOME and
-SCRATCH filesystems are realized as a parallel Lustre filesystem. Both
-shared file systems are accessible via the Infiniband network. Extended
-ACLs are provided on both Lustre filesystems for the purpose of sharing
-data with other users using fine-grained control.
-
-### Understanding the Lustre Filesystems
-
-(source <http://www.nas.nasa.gov>)
-
-A user file on the Lustre filesystem can be divided into multiple chunks
-(stripes) and stored across a subset of the object storage targets
-(OSTs) (disks). The stripes are distributed among the OSTs in a
-round-robin fashion to ensure load balancing.
-
-When a client (a <span class="glossaryItem">compute <span
-class="glossaryItem">node</span></span> from your job) needs to create
-or access a file, the client queries the metadata server (<span
-class="glossaryItem">MDS</span>) and the metadata target (<span
-class="glossaryItem">MDT</span>) for the layout and location of the
-[file's
-stripes](http://www.nas.nasa.gov/hecc/support/kb/Lustre_Basics_224.html#striping).
-Once the file is opened and the client obtains the striping information,
-the <span class="glossaryItem">MDS</span> is no longer involved in the
-file I/O process. The client interacts directly with the object storage
-servers (OSSes) and OSTs to perform I/O operations such as locking, disk
-allocation, storage, and retrieval.
-
-If multiple clients try to read and write the same part of a file at the
-same time, the Lustre distributed lock manager enforces coherency so
-that all clients see consistent results.
-
-There is default stripe configuration for Anselm Lustre filesystems.
-However, users can set the following stripe parameters for their own
-directories or files to get optimum I/O performance:
-
-1.  stripe_size: the size of the chunk in bytes; specify with k, m, or
-    g to use units of KB, MB, or GB, respectively; the size must be an
-    even multiple of 65,536 bytes; default is 1MB for all Anselm Lustre
-    filesystems
-2.  stripe_count the number of OSTs to stripe across; default is 1 for
-    Anselm Lustre filesystems  one can specify -1 to use all OSTs in
-    the filesystem.
-3.  stripe_offset The index of the <span
-    class="glossaryItem">OST</span> where the first stripe is to be
-    placed; default is -1 which results in random selection; using a
-    non-default value is NOT recommended.
-
- 
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-Use the lfs getstripe for getting the stripe parameters. Use the lfs
-setstripe command for setting the stripe parameters to get optimal I/O
-performance The correct stripe setting depends on your needs and file
-access patterns. 
-
-``` 
-$ lfs getstripe dir|filename 
-$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename 
-```
-
-Example:
-
-``` 
-$ lfs getstripe /scratch/username/
-/scratch/username/
-stripe_count:   1 stripe_size:    1048576 stripe_offset:  -1
-
-$ lfs setstripe -c -1 /scratch/username/
-$ lfs getstripe /scratch/username/
-/scratch/username/
-stripe_count:  10 stripe_size:    1048576 stripe_offset:  -1
-```
-
-In this example, we view current stripe setting of the
-/scratch/username/ directory. The stripe count is changed to all OSTs,
-and verified. All files written to this directory will be striped over
-10 OSTs
-
-Use lfs check OSTs to see the number and status of active OSTs for each
-filesystem on Anselm. Learn more by reading the man page
-
-``` 
-$ lfs check osts
-$ man lfs
-```
-
-### Hints on Lustre Stripping
-
-Increase the stripe_count for parallel I/O to the same file.
-
-When multiple processes are writing blocks of data to the same file in
-parallel, the I/O performance for large files will improve when the
-stripe_count is set to a larger value. The stripe count sets the number
-of OSTs the file will be written to. By default, the stripe count is set
-to 1. While this default setting provides for efficient access of
-metadata (for example to support the ls -l command), large files should
-use stripe counts of greater than 1. This will increase the aggregate
-I/O bandwidth by using multiple OSTs in parallel instead of just one. A
-rule of thumb is to use a stripe count approximately equal to the number
-of gigabytes in the file.
-
-Another good practice is to make the stripe count be an integral factor
-of the number of processes performing the write in parallel, so that you
-achieve load balance among the OSTs. For example, set the stripe count
-to 16 instead of 15 when you have 64 processes performing the writes.
-
-Using a large stripe size can improve performance when accessing very
-large files
-
-Large stripe size allows each client to have exclusive access to its own
-part of a file. However, it can be counterproductive in some cases if it
-does not match your I/O pattern. The choice of stripe size has no effect
-on a single-stripe file.
-
-Read more on
-<http://wiki.lustre.org/manual/LustreManual20_HTML/ManagingStripingFreeSpace.html>
-
-### Lustre on Anselm
-
-The  architecture of Lustre on Anselm is composed of two metadata
-servers (MDS) and four data/object storage servers (OSS). Two object
-storage servers are used for file system HOME and another two object
-storage servers are used for file system SCRATCH.
-
-<span class="emphasis">Configuration of the storages</span>
-
-
--   <span class="emphasis">HOME Lustre object storage</span>
-    <div class="itemizedlist">
-
-    -   One disk array NetApp E5400
-    -   22 OSTs
-    -   227 2TB NL-SAS 7.2krpm disks
-    -   22 groups of 10 disks in RAID6 (8+2)
-    -   7 hot-spare disks
-
-    
-
--   <span class="emphasis">SCRATCH Lustre object storage</span>
-    <div class="itemizedlist">
-
-    -   Two disk arrays NetApp E5400
-    -   10 OSTs
-    -   106 2TB NL-SAS 7.2krpm disks
-    -   10 groups of 10 disks in RAID6 (8+2)
-    -   6 hot-spare disks
-
-    
-
--   <span class="emphasis">Lustre metadata storage</span>
-    <div class="itemizedlist">
-
-    -   One disk array NetApp E2600
-    -   12 300GB SAS 15krpm disks
-    -   2 groups of 5 disks in RAID5
-    -   2 hot-spare disks
-
-    
-
-
-
-### []()[]()HOME
-
-The HOME filesystem is mounted in directory /home. Users home
-directories /home/username reside on this filesystem. Accessible
-capacity is 320TB, shared among all users. Individual users are
-restricted by filesystem usage quotas, set to 250GB per user. <span>If
-250GB should prove as insufficient for particular user, please
-contact</span> [support](https://support.it4i.cz/rt),
-the quota may be lifted upon request.
-
-The HOME filesystem is intended for preparation, evaluation, processing
-and storage of data generated by active Projects.
-
-The HOME filesystem should not be used to archive data of past Projects
-or other unrelated data.
-
-The files on HOME filesystem will not be deleted until end of the [users
-lifecycle](../../get-started-with-it4innovations/obtaining-login-credentials/obtaining-login-credentials.html).
-
-The filesystem is backed up, such that it can be restored in case of 
-catasthropic failure resulting in significant data loss. This backup
-however is not intended to restore old versions of user data or to
-restore (accidentaly) deleted files. 
-
-The HOME filesystem is realized as Lustre parallel filesystem and is
-available on all login and computational nodes.
-Default stripe size is 1MB, stripe count is 1. There are 22 OSTs
-dedicated for the HOME filesystem.
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-HOME filesystem
-Mountpoint
-/home
-Capacity
-320TB
-Throughput
-2GB/s
-User quota
-250GB
-Default stripe size
-1MB
-Default stripe count
-1
-Number of OSTs
-22
-### []()[]()SCRATCH
-
-The SCRATCH filesystem is mounted in directory /scratch. Users may
-freely create subdirectories and files on the filesystem. Accessible
-capacity is 146TB, shared among all users. Individual users are
-restricted by filesystem usage quotas, set to 100TB per user. The
-purpose of this quota is to prevent runaway programs from filling the
-entire filesystem and deny service to other users. <span>If 100TB should
-prove as insufficient for particular user, please contact
-[support](https://support.it4i.cz/rt), the quota may be
-lifted upon request. </span>
-
-The Scratch filesystem is intended  for temporary scratch data generated
-during the calculation as well as for high performance access to input
-and output files. All I/O intensive jobs must use the SCRATCH filesystem
-as their working directory.
-
-Users are advised to save the necessary data from the SCRATCH filesystem
-to HOME filesystem after the calculations and clean up the scratch
-files.
-
-Files on the SCRATCH filesystem that are **not accessed for more than 90
-days** will be automatically **deleted**.
-
-The SCRATCH filesystem is realized as Lustre parallel filesystem and is
-available from all login and computational nodes.
-Default stripe size is 1MB, stripe count is 1. There are 10 OSTs
-dedicated for the SCRATCH filesystem.
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-SCRATCH filesystem
-Mountpoint
-/scratch
-Capacity
-146TB
-Throughput
-6GB/s
-User quota
-100TB
-Default stripe size
-1MB
-Default stripe count
-1
-Number of OSTs
-10
-### <span>Disk usage and quota commands</span>
-
-<span>User quotas on the file systems can be checked and reviewed using
-following command:</span>
-
-``` 
-$ lfs quota dir
-```
-
-Example for Lustre HOME directory:
-
-``` 
-$ lfs quota /home
-Disk quotas for user user001 (uid 1234):
-    Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-         /home  300096       0 250000000       -    2102       0  500000    -
-Disk quotas for group user001 (gid 1234):
-    Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-        /home  300096       0       0       -    2102       0       0       -
-```
-
-In this example, we view current quota size limit of 250GB and 300MB
-currently used by user001.
-
-Example for Lustre SCRATCH directory:
-
-``` 
-$ lfs quota /scratch
-Disk quotas for user user001 (uid 1234):
-     Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-          /scratch       8       0 100000000000       -       3       0       0       -
-Disk quotas for group user001 (gid 1234):
- Filesystem kbytes quota limit grace files quota limit grace
- /scratch       8       0       0       -       3       0       0       -
-```
-
-In this example, we view current quota size limit of 100TB and 8KB
-currently used by user001.
-
- 
-
-To have a better understanding of where the space is exactly used, you
-can use following command to find out.
-
-``` 
-$ du -hs dir
-```
-
-Example for your HOME directory:
-
-``` 
-$ cd /home
-$ du -hs * .[a-zA-z0-9]* | grep -E "[0-9]*G|[0-9]*M" | sort -hr
-258M     cuda-samples
-15M      .cache
-13M      .mozilla
-5,5M     .eclipse
-2,7M     .idb_13.0_linux_intel64_app
-```
-
-This will list all directories which are having MegaBytes or GigaBytes
-of consumed space in your actual (in this example HOME) directory. List
-is sorted in descending order from largest to smallest
-files/directories.
-
-
-<span>To have a better understanding of previous commands, you can read
-manpages.</span>
-
-``` 
-$ man lfs
-```
-
-``` 
-$ man du 
-```
-
-### Extended ACLs
-
-Extended ACLs provide another security mechanism beside the standard
-POSIX ACLs which are defined by three entries (for
-owner/group/others). Extended ACLs have more than the three basic
-entries. In addition, they also contain a mask entry and may contain any
-number of named user and named group entries.
-
-ACLs on a Lustre file system work exactly like ACLs on any Linux file
-system. They are manipulated with the standard tools in the standard
-manner. Below, we create a directory and allow a specific user access.
-
-``` 
-[vop999@login1.anselm ~]$ umask 027
-[vop999@login1.anselm ~]$ mkdir test
-[vop999@login1.anselm ~]$ ls -ld test
-drwxr-x--- 2 vop999 vop999 4096 Nov  5 14:17 test
-[vop999@login1.anselm ~]$ getfacl test
-# file: test
-# owner: vop999
-# group: vop999
-user::rwx
-group::r-x
-other::---
-
-[vop999@login1.anselm ~]$ setfacl -m user:johnsm:rwx test
-[vop999@login1.anselm ~]$ ls -ld test
-drwxrwx---+ 2 vop999 vop999 4096 Nov  5 14:17 test
-[vop999@login1.anselm ~]$ getfacl test
-# file: test
-# owner: vop999
-# group: vop999
-user::rwx
-user:johnsm:rwx
-group::r-x
-mask::rwx
-other::---
-```
-
-Default ACL mechanism can be used to replace setuid/setgid permissions
-on directories. Setting a default ACL on a directory (-d flag to
-setfacl) will cause the ACL permissions to be inherited by any newly
-created file or subdirectory within the directory. Refer to this page
-for more information on Linux ACL:
-
-[http://www.vanemery.com/Linux/ACL/POSIX_ACL_on_Linux.html ](http://www.vanemery.com/Linux/ACL/POSIX_ACL_on_Linux.html)
-
-Local Filesystems
------------------
-
-### Local Scratch
-
-Every computational node is equipped with 330GB local scratch disk.
-
-Use local scratch in case you need to access large amount of small files
-during your calculation.
-
-[]()The local scratch disk is mounted as /lscratch and is accessible to
-user at /lscratch/$PBS_JOBID directory.
-
-The local scratch filesystem is intended  for temporary scratch data
-generated during the calculation as well as for high performance access
-to input and output files. All I/O intensive jobs that access large
-number of small files within the calculation must use the local scratch
-filesystem as their working directory. This is required for performance
-reasons, as frequent access to number of small files may overload the
-metadata servers (MDS) of the Lustre filesystem.
-
-The local scratch directory /lscratch/$PBS_JOBID will be deleted
-immediately after the calculation end. Users should take care to save
-the output data from within the jobscript.
-
-local SCRATCH filesystem
-Mountpoint
-/lscratch
-Accesspoint
-/lscratch/$PBS_JOBID
-Capacity
-330GB
-Throughput
-100MB/s
-User quota
-none
-### RAM disk
-
-Every computational node is equipped with filesystem realized in memory,
-so called RAM disk.
-
-Use RAM disk in case you need really fast access to your data of limited
-size during your calculation.
-Be very careful, use of RAM disk filesystem is at the expense of
-operational memory.
-
-[]()The local RAM disk is mounted as /ramdisk and is accessible to user
-at /ramdisk/$PBS_JOBID directory.
-
-The local RAM disk filesystem is intended for temporary scratch data
-generated during the calculation as well as for high performance access
-to input and output files. Size of RAM disk filesystem is limited. Be
-very careful, use of RAM disk filesystem is at the expense of
-operational memory.  It is not recommended to allocate large amount of
-memory and use large amount of data in RAM disk filesystem at the same
-time.
-
-The local RAM disk directory /ramdisk/$PBS_JOBID will be deleted
-immediately after the calculation end. Users should take care to save
-the output data from within the jobscript.
-
-RAM disk
-Mountpoint
-<span class="monospace">/ramdisk</span>
-Accesspoint
-<span class="monospace">/ramdisk/$PBS_JOBID</span>
-Capacity
-60GB at compute nodes without accelerator
-
-90GB at compute nodes with accelerator
-
-500GB at fat nodes
-
-Throughput
-over 1.5 GB/s write, over 5 GB/s read, single thread
-over 10 GB/s write, over 50 GB/s read, 16 threads
-
-User quota
-none
-### tmp
-
-Each node is equipped with local /tmp directory of few GB capacity. The
-/tmp directory should be used to work with small temporary files. Old
-files in /tmp directory are automatically purged.
-
-
-**Summary
-**
-----------
-
-
-  Mountpoint                                 Usage                       Protocol   Net Capacity     Throughput   Limitations   Access                    Services
-  ------------------------------------------ --------------------------- ---------- ---------------- ------------ ------------- ------------------------- -----------------------------
-  <span class="monospace">/home</span>       home directory              Lustre     320 TiB          2 GB/s       Quota 250GB   Compute and login nodes   backed up
-  <span class="monospace">/scratch</span>    cluster shared jobs' data   Lustre     146 TiB          6 GB/s       Quota 100TB   Compute and login nodes   files older 90 days removed
-  <span class="monospace">/lscratch</span>   node local jobs' data       local      330 GB           100 MB/s     none          Compute nodes             purged after job ends
-  <span class="monospace">/ramdisk</span>    node local jobs' data       local      60, 90, 500 GB   5-50 GB/s    none          Compute nodes             purged after job ends
-  <span class="monospace">/tmp</span>        local temporary files       local                       100 MB/s     none          Compute and login nodes   auto purged
-
- 
diff --git a/docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/x-window-and-vnc.md b/docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/x-window-and-vnc.md
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-Graphical User Interface 
-========================
-
-
-
-  
-
-X Window System
----------------
-
-The X Window system is a principal way to get GUI access to the
-clusters.
-
-Read more about configuring [**X Window
-System**](../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc.html).
-
-VNC
----
-
-The **Virtual Network Computing** (**VNC**) is a graphical <span
-class="link-external">[desktop
-sharing](http://en.wikipedia.org/wiki/Desktop_sharing "Desktop sharing")</span>
-system that uses the <span class="link-external">[Remote Frame Buffer
-protocol
-(RFB)](http://en.wikipedia.org/wiki/RFB_protocol "RFB protocol")</span>
-to remotely control another <span
-class="link-external">[computer](http://en.wikipedia.org/wiki/Computer "Computer")</span>.
-
-Read more about configuring
-**[VNC](../../salomon/accessing-the-cluster/graphical-user-interface/vnc.html)**.
diff --git a/docs.it4i.cz/anselm-cluster-documentation/icon.jpg b/docs.it4i.cz/anselm-cluster-documentation/icon.jpg
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diff --git a/docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution.md b/docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution.md
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-Resource Allocation and Job Execution 
-=====================================
-
-
-
-  
-
-To run a [job](introduction.html), [computational
-resources](introduction.html) for this particular job
-must be allocated. This is done via the PBS Pro job workload manager
-software, which efficiently distributes workloads across the
-supercomputer. Extensive informations about PBS Pro can be found in the
-[official documentation
-here](../pbspro-documentation.html), especially in the
-[PBS Pro User's
-Guide](../pbspro-documentation/pbspro-users-guide.1).
-
-Resources Allocation Policy
----------------------------
-
-The resources are allocated to the job in a fairshare fashion, subject
-to constraints set by the queue and resources available to the Project.
-[The
-Fairshare](resource-allocation-and-job-execution/job-priority.html)
-at Anselm ensures that individual users may consume approximately equal
-amount of resources per week. The resources are accessible via several
-queues for queueing the jobs. The queues provide prioritized and
-exclusive access to the computational resources. Following queues are
-available to Anselm users:
-
--   **qexp**, the Express queue
--   **qprod**, the Production queue****
--   **qlong**, the Long queue, regula
--   **qnvidia, qmic, qfat**, the Dedicated queues
--   **qfree,** the Free resource utilization queue
-
-Check the queue status at <https://extranet.it4i.cz/anselm/>
-
-Read more on the [Resource Allocation
-Policy](resource-allocation-and-job-execution/resources-allocation-policy.html)
-page.
-
-Job submission and execution
-----------------------------
-
-Use the **qsub** command to submit your jobs.
-
-The qsub submits the job into the queue. The qsub command creates a
-request to the PBS Job manager for allocation of specified resources. 
-The **smallest allocation unit is entire node, 16 cores**, with
-exception of the qexp queue. The resources will be allocated when
-available, subject to allocation policies and constraints. **After the
-resources are allocated the jobscript or interactive shell is executed
-on first of the allocated nodes.**
-
-Read more on the [Job submission and
-execution](resource-allocation-and-job-execution/job-submission-and-execution.html)
-page.
-
-Capacity computing
-------------------
-
-Use Job arrays when running huge number of jobs.
-Use GNU Parallel and/or Job arrays when running (many) single core jobs.
-
-In many cases, it is useful to submit huge (<span>100+</span>) number of
-computational jobs into the PBS queue system. Huge number of (small)
-jobs is one of the most effective ways to execute embarrassingly
-parallel calculations, achieving best runtime, throughput and computer
-utilization. In this chapter, we discuss the the recommended way to run
-huge number of jobs, including **ways to run huge number of single core
-jobs**.
-
-Read more on [Capacity
-computing](resource-allocation-and-job-execution/capacity-computing.html)
-page.
diff --git a/docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing-examples b/docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing-examples
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diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/anselm-cluster-documentation/software/mpi-1/running-mpich2.md b/docs.it4i.cz/anselm-cluster-documentation/software/anselm-cluster-documentation/software/mpi-1/running-mpich2.md
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-Running MPICH2 
-==============
-
-
-
-  
-
-MPICH2 program execution
-------------------------
-
-The MPICH2 programs use mpd daemon or ssh connection to spawn processes,
-no PBS support is needed. However the PBS allocation is required to
-access compute nodes. On Anselm, the **Intel MPI** and **mpich2 1.9**
-are MPICH2 based MPI implementations.
-
-### Basic usage
-
-Use the mpirun to execute the MPICH2 code.
-
-Example:
-
-    $ qsub -q qexp -l select=4:ncpus=16 -I
-    qsub: waiting for job 15210.srv11 to start
-    qsub: job 15210.srv11 ready
-
-    $ module load impi
-
-    $ mpirun -ppn 1 -hostfile $PBS_NODEFILE ./helloworld_mpi.x
-    Hello world! from rank 0 of 4 on host cn17
-    Hello world! from rank 1 of 4 on host cn108
-    Hello world! from rank 2 of 4 on host cn109
-    Hello world! from rank 3 of 4 on host cn110
-
-In this example, we allocate 4 nodes via the express queue
-interactively. We set up the intel MPI environment and interactively run
-the helloworld_mpi.x program. We request MPI to spawn 1 process per
-node.
-Note that the executable helloworld_mpi.x must be available within the
-same path on all nodes. This is automatically fulfilled on the /home and
-/scratch filesystem.
-
-You need to preload the executable, if running on the local scratch
-/lscratch filesystem
-
-    $ pwd
-    /lscratch/15210.srv11
-    $ mpirun -ppn 1 -hostfile $PBS_NODEFILE cp /home/username/helloworld_mpi.x .
-    $ mpirun -ppn 1 -hostfile $PBS_NODEFILE ./helloworld_mpi.x
-    Hello world! from rank 0 of 4 on host cn17
-    Hello world! from rank 1 of 4 on host cn108
-    Hello world! from rank 2 of 4 on host cn109
-    Hello world! from rank 3 of 4 on host cn110
-
-In this example, we assume the executable helloworld_mpi.x is present
-on shared home directory. We run the cp command via mpirun, copying the
-executable from shared home to local scratch . Second  mpirun will
-execute the binary in the /lscratch/15210.srv11 directory on nodes cn17,
-cn108, cn109 and cn110, one process per node.
-
-MPI process mapping may be controlled by PBS parameters.
-
-The mpiprocs and ompthreads parameters allow for selection of number of
-running MPI processes per node as well as number of OpenMP threads per
-MPI process.
-
-### One MPI process per node
-
-Follow this example to run one MPI process per node, 16 threads per
-process. Note that no options to mpirun are needed
-
-    $ qsub -q qexp -l select=4:ncpus=16:mpiprocs=1:ompthreads=16 -I
-
-    $ module load mvapich2
-
-    $ mpirun ./helloworld_mpi.x
-
-In this example, we demonstrate recommended way to run an MPI
-application, using 1 MPI processes per node and 16 threads per socket,
-on 4 nodes.
-
-### Two MPI processes per node
-
-Follow this example to run two MPI processes per node, 8 threads per
-process. Note the options to mpirun for mvapich2. No options are needed
-for impi.
-
-    $ qsub -q qexp -l select=4:ncpus=16:mpiprocs=2:ompthreads=8 -I
-
-    $ module load mvapich2
-
-    $ mpirun -bind-to numa ./helloworld_mpi.x
-
-In this example, we demonstrate recommended way to run an MPI
-application, using 2 MPI processes per node and 8 threads per socket,
-each process and its threads bound to a separate processor socket of the
-node, on 4 nodes
-
-### 16 MPI processes per node
-
-Follow this example to run 16 MPI processes per node, 1 thread per
-process. Note the options to mpirun for mvapich2. No options are needed
-for impi.
-
-    $ qsub -q qexp -l select=4:ncpus=16:mpiprocs=16:ompthreads=1 -I
-
-    $ module load mvapich2
-
-    $ mpirun -bind-to core ./helloworld_mpi.x
-
-In this example, we demonstrate recommended way to run an MPI
-application, using 16 MPI processes per node, single threaded. Each
-process is bound to separate processor core, on 4 nodes.
-
-### OpenMP thread affinity
-
-Important!  Bind every OpenMP thread to a core!
-
-In the previous two examples with one or two MPI processes per node, the
-operating system might still migrate OpenMP threads between cores. You
-might want to avoid this by setting these environment variable for GCC
-OpenMP:
-
-    $ export GOMP_CPU_AFFINITY="0-15"
-
-or this one for Intel OpenMP:
-
-    $ export KMP_AFFINITY=granularity=fine,compact,1,0
-
-As of OpenMP 4.0 (supported by GCC 4.9 and later and Intel 14.0 and
-later) the following variables may be used for Intel or GCC:
-
-    $ export OMP_PROC_BIND=true
-    $ export OMP_PLACES=cores 
-
- 
-
-MPICH2 Process Mapping and Binding
-----------------------------------
-
-The mpirun allows for precise selection of how the MPI processes will be
-mapped to the computational nodes and how these processes will bind to
-particular processor sockets and cores.
-
-### Machinefile
-
-Process mapping may be controlled by specifying a machinefile input to
-the mpirun program. Altough all implementations of MPI provide means for
-process mapping and binding, following examples are valid for the impi
-and mvapich2 only.
-
-Example machinefile
-
-    cn110.bullx
-    cn109.bullx
-    cn108.bullx
-    cn17.bullx
-    cn108.bullx
-
-Use the machinefile to control process placement
-
-    $ mpirun -machinefile machinefile helloworld_mpi.x
-    Hello world! from rank 0 of 5 on host cn110
-    Hello world! from rank 1 of 5 on host cn109
-    Hello world! from rank 2 of 5 on host cn108
-    Hello world! from rank 3 of 5 on host cn17
-    Hello world! from rank 4 of 5 on host cn108
-
-In this example, we see that ranks have been mapped on nodes according
-to the order in which nodes show in the machinefile
-
-### Process Binding
-
-The Intel MPI automatically binds each process and its threads to the
-corresponding portion of cores on the processor socket of the node, no
-options needed. The binding is primarily controlled by environment
-variables. Read more about mpi process binding on [Intel
-website](https://software.intel.com/sites/products/documentation/hpc/ics/impi/41/lin/Reference_Manual/Environment_Variables_Process_Pinning.htm).
-The MPICH2 uses the -bind-to option Use -bind-to numa or -bind-to core
-to bind the process on single core or entire socket.
-
-### Bindings verification
-
-In all cases, binding and threading may be verified by executing
-
-    $ mpirun  -bindto numa numactl --show
-    $ mpirun  -bindto numa echo $OMP_NUM_THREADS
-
-Intel MPI on Xeon Phi
----------------------
-
-The[MPI section of Intel Xeon Phi
-chapter](../../../intel-xeon-phi.html) provides details
-on how to run Intel MPI code on Xeon Phi architecture.
-
-
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-cfx-pbs-file.1 b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-cfx-pbs-file.1
deleted file mode 100644
index 51a7614bd3483479099938f533024ab16451ba1e..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-cfx-pbs-file.1
+++ /dev/null
@@ -1,32 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-CFX-Project
-#PBS -A XX-YY-ZZ
-#! Mail to user when job terminate or abort
-#PBS -m ae
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-module load ansys
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-echo Machines: $hl
-#-dev input.def includes the input of CFX analysis in DEF format
-/ansys_inc/v145/CFX/bin/cfx5solve -def input.def -size 4 -size-ni 4x -part-large -start-method "Platform MPI Distributed Parallel" -par-dist $hl
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-cfx-pbs-file/at_download/file b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-cfx-pbs-file/at_download/file
deleted file mode 100644
index 51a7614bd3483479099938f533024ab16451ba1e..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-cfx-pbs-file/at_download/file
+++ /dev/null
@@ -1,32 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-CFX-Project
-#PBS -A XX-YY-ZZ
-#! Mail to user when job terminate or abort
-#PBS -m ae
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-module load ansys
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-echo Machines: $hl
-#-dev input.def includes the input of CFX analysis in DEF format
-/ansys_inc/v145/CFX/bin/cfx5solve -def input.def -size 4 -size-ni 4x -part-large -start-method "Platform MPI Distributed Parallel" -par-dist $hl
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-fluent-pbs-file.1 b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-fluent-pbs-file.1
deleted file mode 100644
index b5c0bcd7d40180c6706a5f2babc0d598ed7f866d..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-fluent-pbs-file.1
+++ /dev/null
@@ -1,28 +0,0 @@
-#!/bin/bash
-#PBS -S /bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-Fluent-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-#### Load ansys module so that we find the cfx5solve command
-module load ansys
-
-# Use following line to specify MPI for message-passing instead
-NCORES=`wc -l $PBS_NODEFILE |awk '{print $1}'`
-
-/ansys_inc/v145/fluent/bin/fluent 3d -t$NCORES -cnf=$PBS_NODEFILE -g -i fluent.jou
\ No newline at end of file
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-fluent-pbs-file/at_download/file b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-fluent-pbs-file/at_download/file
deleted file mode 100644
index b5c0bcd7d40180c6706a5f2babc0d598ed7f866d..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-fluent-pbs-file/at_download/file
+++ /dev/null
@@ -1,28 +0,0 @@
-#!/bin/bash
-#PBS -S /bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-Fluent-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-#### Load ansys module so that we find the cfx5solve command
-module load ansys
-
-# Use following line to specify MPI for message-passing instead
-NCORES=`wc -l $PBS_NODEFILE |awk '{print $1}'`
-
-/ansys_inc/v145/fluent/bin/fluent 3d -t$NCORES -cnf=$PBS_NODEFILE -g -i fluent.jou
\ No newline at end of file
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-ls-dyna-pbs-file.1 b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-ls-dyna-pbs-file.1
deleted file mode 100644
index 0f07a5b5016d7d9873cdb2bc93f8f547e639e51d..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-ls-dyna-pbs-file.1
+++ /dev/null
@@ -1,43 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=8
-#PBS -q qprod
-#PBS -N $USER-DYNA-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory>
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-#! Counts the number of processors
-NPROCS=`wc -l < $PBS_NODEFILE`
-
-echo This job has allocated $NPROCS nodes
-
-module load ansys
-
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-
-echo Machines: $hl
-
-/ansys_inc/v145/ansys/bin/ansys145 -dis -lsdynampp i=input.k -machines $hl
\ No newline at end of file
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-ls-dyna-pbs-file/at_download/file b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-ls-dyna-pbs-file/at_download/file
deleted file mode 100644
index 0f07a5b5016d7d9873cdb2bc93f8f547e639e51d..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-ls-dyna-pbs-file/at_download/file
+++ /dev/null
@@ -1,43 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=8
-#PBS -q qprod
-#PBS -N $USER-DYNA-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory>
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-#! Counts the number of processors
-NPROCS=`wc -l < $PBS_NODEFILE`
-
-echo This job has allocated $NPROCS nodes
-
-module load ansys
-
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-
-echo Machines: $hl
-
-/ansys_inc/v145/ansys/bin/ansys145 -dis -lsdynampp i=input.k -machines $hl
\ No newline at end of file
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-mapdl-pbs-file.1 b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-mapdl-pbs-file.1
deleted file mode 100644
index 5d701c7e3bba9af76b303b3e6e8523aae1042ea9..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-mapdl-pbs-file.1
+++ /dev/null
@@ -1,41 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-ANSYS-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-module load ansys
-
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-
-echo Machines: $hl
-
-#-i input.dat includes the input of analysis in APDL format
-#-o file.out is output file from ansys where all text outputs will be redirected 
-#-p the name of license feature (aa_r=ANSYS Academic Research, ane3fl=Multiphysics(commercial), aa_r_dy=Academic AUTODYN)
-/ansys_inc/v145/ansys/bin/ansys145 -b -dis -p aa_r -i input.dat -o file.out -machines $hl -dir $WORK_DIR
\ No newline at end of file
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-mapdl-pbs-file/at_download/file b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-mapdl-pbs-file/at_download/file
deleted file mode 100644
index 5d701c7e3bba9af76b303b3e6e8523aae1042ea9..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-mapdl-pbs-file/at_download/file
+++ /dev/null
@@ -1,41 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-ANSYS-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-module load ansys
-
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-
-echo Machines: $hl
-
-#-i input.dat includes the input of analysis in APDL format
-#-o file.out is output file from ansys where all text outputs will be redirected 
-#-p the name of license feature (aa_r=ANSYS Academic Research, ane3fl=Multiphysics(commercial), aa_r_dy=Academic AUTODYN)
-/ansys_inc/v145/ansys/bin/ansys145 -b -dis -p aa_r -i input.dat -o file.out -machines $hl -dir $WORK_DIR
\ No newline at end of file
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-products-mechanical-fluent-cfx-mapdl.md b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-products-mechanical-fluent-cfx-mapdl.md
deleted file mode 100644
index ea369b7a88f22f62380b9d45528d2ca494805d66..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-products-mechanical-fluent-cfx-mapdl.md
+++ /dev/null
@@ -1,36 +0,0 @@
-Overview of ANSYS Products 
-==========================
-
-**[SVS FEM](http://www.svsfem.cz/)** as ***[ANSYS
-Channel partner](http://www.ansys.com/)*** for Czech
-Republic provided all ANSYS licenses for ANSELM cluster and supports of
-all ANSYS Products (Multiphysics, Mechanical, MAPDL, CFX, Fluent,
-Maxwell, LS-DYNA...) to IT staff and ANSYS users. If you are challenging
-to problem of ANSYS functionality contact
-please [hotline@svsfem.cz](mailto:hotline@svsfem.cz?subject=Ostrava%20-%20ANSELM)
-
-Anselm provides as commercial as academic variants. Academic variants
-are distinguished by "**Academic...**" word in the name of  license or
-by two letter preposition "**aa_**" in the license feature name. Change
-of license is realized on command line respectively directly in user's
-pbs file (see individual products). [<span id="result_box"
-class="short_text"><span class="hps">More</span> <span class="hps">about
-licensing</span> <span
-class="hps">here</span></span>](licensing.html)
-
-To load the latest version of any ANSYS product (Mechanical, Fluent,
-CFX, MAPDL,...) load the module:
-
-    $ module load ansys
-
-ANSYS supports interactive regime, but due to assumed solution of
-extremely difficult tasks it is not recommended.
-
-If user needs to work in interactive regime we recommend to configure
-the RSM service on the client machine which allows to forward the
-solution to the Anselm directly from the client's Workbench project
-(see ANSYS RSM service).
-
-
-
-
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ls-dyna-pbs-file.1 b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ls-dyna-pbs-file.1
deleted file mode 100644
index 81fb179a41c7545facdc5ae4d10ccff410874e20..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ls-dyna-pbs-file.1
+++ /dev/null
@@ -1,21 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=1:ppn=1
-#PBS -q qprod
-#PBS -N $USER-LSDYNA-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-
-module load lsdyna
-
-/apps/engineering/lsdyna/lsdyna700s i=input.k
\ No newline at end of file
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ls-dyna-pbs-file/at_download/file b/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ls-dyna-pbs-file/at_download/file
deleted file mode 100644
index 81fb179a41c7545facdc5ae4d10ccff410874e20..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/ansys/ls-dyna-pbs-file/at_download/file
+++ /dev/null
@@ -1,21 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=1:ppn=1
-#PBS -q qprod
-#PBS -N $USER-LSDYNA-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-
-module load lsdyna
-
-/apps/engineering/lsdyna/lsdyna700s i=input.k
\ No newline at end of file
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/comsol.md b/docs.it4i.cz/anselm-cluster-documentation/software/comsol.md
deleted file mode 100644
index 2b71e4fe64447f4b3491bd302709d2f5301239e1..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/comsol.md
+++ /dev/null
@@ -1,207 +0,0 @@
-COMSOL Multiphysics® 
-====================
-
-
-
-  
-
-<span><span>Introduction
-</span></span>
--------------------------
-
-<span><span>[COMSOL](http://www.comsol.com)</span></span><span><span>
-is a powerful environment for modelling and solving various engineering
-and scientific problems based on partial differential equations. COMSOL
-is designed to solve coupled or multiphysics phenomena. For many
-standard engineering problems COMSOL provides add-on products such as
-electrical, mechanical, fluid flow, and chemical
-applications.</span></span>
-
--   <span><span>[Structural Mechanics
-    Module](http://www.comsol.com/structural-mechanics-module),
-    </span></span>
-
--   <span><span>[Heat Transfer
-    Module](http://www.comsol.com/heat-transfer-module),
-    </span></span>
-
--   <span><span>[CFD
-    Module](http://www.comsol.com/cfd-module),
-    </span></span>
-
--   <span><span>[Acoustics
-    Module](http://www.comsol.com/acoustics-module),
-    </span></span>
-
--   <span><span>and [many
-    others](http://www.comsol.com/products)</span></span>
-
-<span><span>COMSOL also allows an
-</span></span><span><span><span><span>interface support for
-equation-based modelling of
-</span></span></span></span><span><span>partial differential
-equations.</span></span>
-
-<span><span>Execution
-</span></span>
-----------------------
-
-<span><span>On the Anselm cluster COMSOL is available in the latest
-stable version. There are two variants of the release:</span></span>
-
--   <span><span>**Non commercial**</span></span><span><span> or so
-    called </span></span><span><span>**EDU
-    variant**</span></span><span><span>, which can be used for research
-    and educational purposes.</span></span>
-
--   <span><span>**Commercial**</span></span><span><span> or so called
-    </span></span><span><span>**COM variant**</span></span><span><span>,
-    which can used also for commercial activities.
-    </span></span><span><span>**COM variant**</span></span><span><span>
-    has only subset of features compared to the
-    </span></span><span><span>**EDU
-    variant**</span></span><span><span> available. <span
-    class="internal-link"><span id="result_box" class="short_text"><span
-    class="hps">More</span> <span class="hps">about
-    licensing</span> will be posted <span class="hps">here
-    soon</span>.</span></span>
-    </span></span>
-
-<span><span>To load the of COMSOL load the module</span></span>
-
-``` 
-$ module load comsol
-```
-
-<span><span>By default the </span></span><span><span>**EDU
-variant**</span></span><span><span> will be loaded. If user needs other
-version or variant, load the particular version. To obtain the list of
-available versions use</span></span>
-
-``` 
-$ module avail comsol
-```
-
-<span><span>If user needs to prepare COMSOL jobs in the interactive mode
-it is recommend to use COMSOL on the compute nodes via PBS Pro
-scheduler. In order run the COMSOL Desktop GUI on Windows is recommended
-to use the [Virtual Network Computing
-(VNC)](https://docs.it4i.cz/anselm-cluster-documentation/software/comsol/resolveuid/11e53ad0d2fd4c5187537f4baeedff33).</span></span>
-
-``` 
-$ xhost +
-$ qsub -I -X -A PROJECT_ID -q qprod -l select=1:ncpus=16
-$ module load comsol
-$ comsol
-```
-
-<span><span>To run COMSOL in batch mode, without the COMSOL Desktop GUI
-environment, user can utilized the default (comsol.pbs) job script and
-execute it via the qsub command.</span></span>
-
-``` 
-#!/bin/bash
-#PBS -l select=3:ncpus=16
-#PBS -q qprod
-#PBS -N JOB_NAME
-#PBS -A  PROJECT_ID
-
-cd /scratch/$USER/ || exit
-
-echo Time is `date`
-echo Directory is `pwd`
-echo '***PBS_NODEFILE***START*******'
-cat $PBS_NODEFILE
-echo '***PBS_NODEFILE***END*********'
-
-text_nodes < cat $PBS_NODEFILE
-
-module load comsol
-# module load comsol/43b-COM
-
-ntask=$(wc -l $PBS_NODEFILE)
-
-comsol -nn $ batch -configuration /tmp –mpiarg –rmk –mpiarg pbs -tmpdir /scratch/$USER/ -inputfile name_input_f.mph -outputfile name_output_f.mph -batchlog name_log_f.log
-```
-
-<span><span>Working directory has to be created before sending the
-(comsol.pbs) job script into the queue. Input file (name_input_f.mph)
-has to be in working directory or full path to input file has to be
-specified. The appropriate path to the temp directory of the job has to
-be set by command option (-tmpdir).</span></span>
-
-LiveLink™* *for MATLAB^®^
--------------------------
-
-<span><span>COMSOL is the software package for the numerical solution of
-the partial differential equations. LiveLink for MATLAB allows
-connection to the
-COMSOL</span></span><span><span>^<span><span><span><span><span><span><span>**®**</span></span></span></span></span></span></span>^</span></span><span><span>
-API (Application Programming Interface) with the benefits of the
-programming language and computing environment of the MATLAB.
-</span></span>
-
-<span><span>LiveLink for MATLAB is available in both
-</span></span><span><span>**EDU**</span></span><span><span> and
-</span></span><span><span>**COM**</span></span><span><span>
-</span></span><span><span>**variant**</span></span><span><span> of the
-COMSOL release. On Anselm 1 commercial
-(</span></span><span><span>**COM**</span></span><span><span>) license
-and the 5 educational
-(</span></span><span><span>**EDU**</span></span><span><span>) licenses
-of LiveLink for MATLAB (please see the [ISV
-Licenses](isv_licenses.html)) are available. Following
-example shows how to start COMSOL model from MATLAB via LiveLink in the
-interactive mode.</span></span>
-
-``` 
-$ xhost +
-$ qsub -I -X -A PROJECT_ID -q qexp -l select=1:ncpus=16
-$ module load matlab
-$ module load comsol
-$ comsol server matlab
-```
-
-<span><span>At the first time to launch the LiveLink for MATLAB
-(client-MATLAB/server-COMSOL connection) the login and password is
-requested and this information is not requested again.</span></span>
-
-<span><span>To run LiveLink for MATLAB in batch mode with
-(comsol_matlab.pbs) job script you can utilize/modify the following
-script and execute it via the qsub command.</span></span>
-
-``` 
-#!/bin/bash
-#PBS -l select=3:ncpus=16
-#PBS -q qprod
-#PBS -N JOB_NAME
-#PBS -A  PROJECT_ID
-
-cd /scratch/$USER || exit
-
-echo Time is `date`
-echo Directory is `pwd`
-echo '***PBS_NODEFILE***START*******'
-cat $PBS_NODEFILE
-echo '***PBS_NODEFILE***END*********'
-
-text_nodes < cat $PBS_NODEFILE
-
-module load matlab
-module load comsol/43b-EDU
-
-ntask=$(wc -l $PBS_NODEFILE)
-
-comsol -nn $ server -configuration /tmp -mpiarg -rmk -mpiarg pbs -tmpdir /scratch/$USER &
-cd /apps/engineering/comsol/comsol43b/mli
-matlab -nodesktop -nosplash -r "mphstart; addpath /scratch/$USER; test_job"
-```
-
-This example shows how to run Livelink for MATLAB with following
-configuration: 3 nodes and 16 cores per node. Working directory has to
-be created before submitting (comsol_matlab.pbs) job script into the
-queue. Input file (test_job.m) has to be in working directory or full
-path to input file has to be specified. The Matlab command option (-r
-”mphstart”) created a connection with a COMSOL server using the default
-port number.
-
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/debuggers/mympiprog_32p_2014-10-15_16-56.txt b/docs.it4i.cz/anselm-cluster-documentation/software/debuggers/mympiprog_32p_2014-10-15_16-56.txt
deleted file mode 100644
index de8449179640fd943a9f007f9eda084b11f2a455..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/debuggers/mympiprog_32p_2014-10-15_16-56.txt
+++ /dev/null
@@ -1,50 +0,0 @@
-Executable:	mympiprog.x
-Resources:	32 processes, 2 nodes
-Machine:	cn182
-Started on:	Wed Oct 15 16:56:23 2014
-Total time:	7 seconds (0 minutes)
-Full path:	/home/user
-Notes:		
-
-Summary: mympiprog.x is CPU-bound in this configuration
-CPU:				  88.6% |========|
-MPI:				  11.4% ||
-I/O:				   0.0% |
-This application run was CPU-bound. A breakdown of this time and advice for investigating further is found in the CPU section below.
-As very little time is spent in MPI calls, this code may also benefit from running at larger scales.
-
-CPU:
-A breakdown of how the 88.6% total CPU time was spent:
-Scalar numeric ops:		   50.0% |====|
-Vector numeric ops:		   50.0% |====|
-Memory accesses:		    0.0% |
-Other:				    0.0% |
-The per-core performance is arithmetic-bound. Try to increase the amount of time spent in vectorized instructions by analyzing the compiler's vectorization reports.
-
-
-MPI:
-A breakdown of how the 11.4% total MPI time was spent:
-Time in collective calls:	  100.0% |=========|
-Time in point-to-point calls:	    0.0% |
-Effective collective rate:	1.65e+02 bytes/s
-Effective point-to-point rate:	0.00e+00 bytes/s
-Most of the time is spent in collective calls with a very low transfer rate. This suggests load imbalance is causing synchonization overhead; use an MPI profiler to investigate further.
-
-
-I/O:
-A breakdown of how the 0.0% total I/O time was spent:
-Time in reads:			    0.0% |
-Time in writes:			    0.0% |
-Effective read rate:		0.00e+00 bytes/s
-Effective write rate:		0.00e+00 bytes/s
-No time is spent in I/O operations. There's nothing to optimize here!
-
-
-Memory:
-Per-process memory usage may also affect scaling:
-Mean process memory usage:	2.33e+07 bytes
-Peak process memory usage:	2.35e+07 bytes
-Peak node memory usage:		    2.8% |
-The peak node memory usage is very low. You may be able to reduce the amount of allocation time used by running with fewer MPI processes and more data on each process.
-
-
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/mpi-1.md b/docs.it4i.cz/anselm-cluster-documentation/software/mpi-1.md
deleted file mode 100644
index a46564ad737c5aafa9abceb027de31dd3a8a1a70..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/software/mpi-1.md
+++ /dev/null
@@ -1,201 +0,0 @@
-MPI 
-===
-
-
-
-  
-
-Setting up MPI Environment
---------------------------
-
-The Anselm cluster provides several implementations of the MPI library:
-
-<table>
-<colgroup>
-<col width="50%" />
-<col width="50%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">MPI Library</th>
-<th align="left">Thread support</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><p>The highly optimized and stable <strong>bullxmpi 1.2.4.1</strong></p></td>
-<td align="left"><strong></strong>Partial thread support up to MPI_THREAD_SERIALIZED</td>
-</tr>
-<tr class="even">
-<td align="left">The <strong>Intel MPI 4.1</strong></td>
-<td align="left">Full thread support up to MPI_THREAD_MULTIPLE</td>
-</tr>
-<tr class="odd">
-<td align="left">The  <a href="http://www.open-mpi.org/" class="external-link"><strong>OpenMPI 1.6.5</strong></a></td>
-<td align="left">Full thread support up to MPI_THREAD_MULTIPLE, BLCR c/r support</td>
-</tr>
-<tr class="even">
-<td align="left">The OpenMPI 1.8.1</td>
-<td align="left">Full thread support up to MPI_THREAD_MULTIPLE, MPI-3.0 support</td>
-</tr>
-<tr class="odd">
-<td align="left">The <strong><strong>mpich2 1.9</strong></strong></td>
-<td align="left">Full thread support up to <strong></strong> MPI_THREAD_MULTIPLE, BLCR c/r support</td>
-</tr>
-</tbody>
-</table>
-
-MPI libraries are activated via the environment modules.
-
-Look up section modulefiles/mpi in module avail
-
-    $ module avail
-    ------------------------- /opt/modules/modulefiles/mpi -------------------------
-    bullxmpi/bullxmpi-1.2.4.1  mvapich2/1.9-icc
-    impi/4.0.3.008             openmpi/1.6.5-gcc(default)
-    impi/4.1.0.024             openmpi/1.6.5-gcc46
-    impi/4.1.0.030             openmpi/1.6.5-icc
-    impi/4.1.1.036(default)    openmpi/1.8.1-gcc
-    openmpi/1.8.1-gcc46
-    mvapich2/1.9-gcc(default)  openmpi/1.8.1-gcc49
-    mvapich2/1.9-gcc46         openmpi/1.8.1-icc
-
-There are default compilers associated with any particular MPI
-implementation. The defaults may be changed, the MPI libraries may be
-used in conjunction with any compiler.
-The defaults are selected via the modules in following way
-
-  Module         MPI                Compiler suite
-  -------------- ------------------ --------------------------------------------------------------------------------
-  PrgEnv-gnu     bullxmpi-1.2.4.1   bullx GNU 4.4.6
-  PrgEnv-intel   Intel MPI 4.1.1    Intel 13.1.1
-  bullxmpi       bullxmpi-1.2.4.1   none, select via module
-  impi           Intel MPI 4.1.1    none, select via module
-  openmpi        OpenMPI 1.6.5      GNU compilers 4.8.1, GNU compilers 4.4.6, Intel Compilers
-  openmpi        OpenMPI 1.8.1      GNU compilers 4.8.1, GNU compilers 4.4.6, GNU compilers 4.9.0, Intel Compilers
-  mvapich2       MPICH2 1.9         GNU compilers 4.8.1, GNU compilers 4.4.6, Intel Compilers
-
-Examples:
-
-    $ module load openmpi
-
-In this example, we activate the latest openmpi with latest GNU
-compilers
-
-To use openmpi with the intel compiler suite, use
-
-    $ module load intel
-    $ module load openmpi/1.6.5-icc
-
-In this example, the openmpi 1.6.5 using intel compilers is activated
-
-Compiling MPI Programs
-----------------------
-
-After setting up your MPI environment, compile your program using one of
-the mpi wrappers
-
-    $ mpicc -v
-    $ mpif77 -v
-    $ mpif90 -v
-
-Example program:
-
-    // helloworld_mpi.c
-    #include <stdio.h>
-
-    #include<mpi.h>
-
-    int main(int argc, char **argv) {
-
-    int len;
-    int rank, size;
-    char node[MPI_MAX_PROCESSOR_NAME];
-
-    // Initiate MPI
-    MPI_Init(&argc, &argv);
-    MPI_Comm_rank(MPI_COMM_WORLD,&rank);
-    MPI_Comm_size(MPI_COMM_WORLD,&size);
-
-    // Get hostame and print
-    MPI_Get_processor_name(node,&len);
-    printf("Hello world! from rank %d of %d on host %sn",rank,size,node);
-
-    // Finalize and exit
-    MPI_Finalize();
-
-    return 0;
-    }
-
-Compile the above example with
-
-    $ mpicc helloworld_mpi.c -o helloworld_mpi.x
-
-Running MPI Programs
---------------------
-
-The MPI program executable must be compatible with the loaded MPI
-module.
-Always compile and execute using the very same MPI module.
-
-It is strongly discouraged to mix mpi implementations. Linking an
-application with one MPI implementation and running mpirun/mpiexec form
-other implementation may result in unexpected errors.
-
-The MPI program executable must be available within the same path on all
-nodes. This is automatically fulfilled on the /home and /scratch
-filesystem. You need to preload the executable, if running on the local
-scratch /lscratch filesystem.
-
-### Ways to run MPI programs
-
-Optimal way to run an MPI program depends on its memory requirements,
-memory access pattern and communication pattern.
-
-Consider these ways to run an MPI program:
-1. One MPI process per node, 16 threads per process
-2. Two MPI processes per node, 8 threads per process
-3. 16 MPI processes per node, 1 thread per process.
-
-**One MPI** process per node, using 16 threads, is most useful for
-memory demanding applications, that make good use of processor cache
-memory and are not memory bound.  This is also a preferred way for
-communication intensive applications as one process per node enjoys full
-bandwidth access to the network interface. 
-
-**Two MPI** processes per node, using 8 threads each, bound to processor
-socket is most useful for memory bandwidth bound applications such as
-BLAS1 or FFT, with scalable memory demand. However, note that the two
-processes will share access to the network interface. The 8 threads and
-socket binding should ensure maximum memory access bandwidth and
-minimize communication, migration and numa effect overheads.
-
-Important!  Bind every OpenMP thread to a core!
-
-In the previous two cases with one or two MPI processes per node, the
-operating system might still migrate OpenMP threads between cores. You
-want to avoid this by setting the KMP_AFFINITY or GOMP_CPU_AFFINITY
-environment variables.
-
-**16 MPI** processes per node, using 1 thread each bound to processor
-core is most suitable for highly scalable applications with low
-communication demand.
-
-### Running OpenMPI
-
-The **bullxmpi-1.2.4.1** and [**OpenMPI
-1.6.5**](http://www.open-mpi.org/) are both based on
-OpenMPI. Read more on [how to run
-OpenMPI](mpi-1/Running_OpenMPI.html) based MPI.
-
-### Running MPICH2
-
-The **Intel MPI** and **mpich2 1.9** are MPICH2 based implementations.
-Read more on [how to run
-MPICH2](mpi-1/running-mpich2.html) based MPI.
-
-The Intel MPI may run on the Intel Xeon Phi accelerators as well. Read
-more on [how to run Intel MPI on
-accelerators](intel-xeon-phi.html).
-
-
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages.1.md b/docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages.1.md
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--- a/docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages.1.md
+++ /dev/null
@@ -1,51 +0,0 @@
-Numerical languages 
-===================
-
-Interpreted languages for numerical computations and analysis
-
-
-  
-
-Introduction
-------------
-
-This section contains a collection of high-level interpreted languages,
-primarily intended for numerical computations.
-
-Matlab
-------
-
-MATLAB^®^ is a high-level language and interactive environment for
-numerical computation, visualization, and programming.
-
-    $ module load MATLAB/2015b-EDU
-    $ matlab
-
-Read more at the [Matlab<span class="internal-link"></span>
-page](numerical-languages/matlab.html).
-
-Octave
-------
-
-GNU Octave is a high-level interpreted language, primarily intended for
-numerical computations. The Octave language is quite similar to Matlab
-so that most programs are easily portable.
-
-    $ module load Octave
-    $ octave
-
-Read more at the [Octave
-page](numerical-languages/octave.html).
-
-R
--
-
-The R is an interpreted language and environment for statistical
-computing and graphics.
-
-    $ module load R
-    $ R
-
-Read more at the [R page](numerical-languages/r.html).
-
-
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+++ /dev/null
@@ -1,491 +0,0 @@
-Virtualization 
-==============
-
-Running virtual machines on compute nodes
-
-
-  
-
-Introduction
-------------
-
-There are situations when Anselm's environment is not suitable for user
-needs.
-
--   Application requires different operating system (e.g Windows),
-    application is not available for Linux
--   Application requires different versions of base system libraries and
-    tools
--   Application requires specific setup (installation, configuration) of
-    complex software stack
--   Application requires privileged access to operating system
--   ... and combinations of above cases
-
- We offer solution for these cases - **virtualization**. Anselm's
-environment gives the possibility to run virtual machines on compute
-nodes. Users can create their own images of operating system with
-specific software stack and run instances of these images as virtual
-machines on compute nodes. Run of virtual machines is provided by
-standard mechanism of [Resource Allocation and Job
-Execution](../resource-allocation-and-job-execution/introduction.html).
-
-Solution is based on QEMU-KVM software stack and provides
-hardware-assisted x86 virtualization.
-
-Limitations
------------
-
-Anselm's infrastructure was not designed for virtualization. Anselm's
-environment is not intended primary for virtualization, compute nodes,
-storages and all infrastructure of Anselm is intended and optimized for
-running HPC jobs, this implies suboptimal configuration of
-virtualization and limitations.
-
-Anselm's virtualization does not provide performance and all features of
-native environment. There is significant performance hit (degradation)
-in I/O performance (storage, network). Anselm's virtualization is not
-suitable for I/O (disk, network) intensive workloads.
-
-Virtualization has also some drawbacks, it is not so easy to setup
-efficient solution.
-
-Solution described in chapter
-[HOWTO](virtualization/virtualization.html#howto)<span
-class="anchor-link"> is suitable for </span>single node tasks, does not
-introduce virtual machine clustering.
-
-Please consider virtualization as last resort solution for your needs.
-
-Please consult use of virtualization with IT4Innovation's support.
-
-For running Windows application (when source code and Linux native
-application are not available) consider use of Wine, Windows
-compatibility layer. Many Windows applications can be run using Wine
-with less effort and better performance than when using virtualization.
-
-Licensing
----------
-
-IT4Innovations does not provide any licenses for operating systems and
-software of virtual machines. Users are (<span id="result_box"><span
-class="hps">in accordance with</span></span> [Acceptable use policy
-document](http://www.it4i.cz/acceptable-use-policy.pdf))
-fully responsible for licensing all software running in virtual machines
-on Anselm. Be aware of complex conditions of licensing software in
-virtual environments.
-
-Users are responsible for licensing OS e.g. MS Windows and all software
-running in their virtual machines.
-
-[]() HOWTO
-----------
-
-### []()Virtual Machine Job Workflow
-
-We propose this job workflow:
-
- ![Virtualization Job
-Workflow](virtualization/virtualization-job-workflow "Virtualization Job Workflow")
-
-Our recommended solution is that job script creates distinct shared job
-directory, which makes a central point for data exchange between
-Anselm's environment, compute node (host) (e.g HOME, SCRATCH, local
-scratch and other local or cluster filesystems) and virtual machine
-(guest). Job script links or copies input data and instructions what to
-do (run script) for virtual machine to job directory and virtual machine
-process input data according instructions in job directory and store
-output back to job directory. We recommend, that virtual machine is
-running in so called [snapshot
-mode](virtualization/virtualization.html#snapshot-mode),
-image is immutable - image does not change, so one image can be used for
-many concurrent jobs.
-
-### Procedure
-
-1.  Prepare image of your virtual machine
-2.  Optimize image of your virtual machine for Anselm's virtualization
-3.  Modify your image for running jobs
-4.  Create job script for executing virtual machine
-5.  Run jobs
-
-### Prepare image of your virtual machine
-
-You can either use your existing image or create new image from scratch.
-
-QEMU currently supports these image types or formats:
-
--   raw 
--   cloop 
--   cow 
--   qcow 
--   qcow2 
--   vmdk - VMware 3 & 4, or 6 image format, for exchanging images with
-    that product
--   vdi - VirtualBox 1.1 compatible image format, for exchanging images
-    with VirtualBox.
-
-You can convert your existing image using qemu-img convert command.
-Supported formats of this command are: blkdebug blkverify bochs cloop
-cow dmg file ftp ftps host_cdrom host_device host_floppy http https
-nbd parallels qcow qcow2 qed raw sheepdog tftp vdi vhdx vmdk vpc vvfat.
-
-We recommend using advanced QEMU native image format qcow2.
-
-[More about QEMU
-Images](http://en.wikibooks.org/wiki/QEMU/Images)
-
-### Optimize image of your virtual machine
-
-Use virtio devices (for disk/drive and network adapter) and install
-virtio drivers (paravirtualized drivers) into virtual machine. There is
-significant performance gain when using virtio drivers. For more
-information see [Virtio
-Linux](http://www.linux-kvm.org/page/Virtio) and [Virtio
-Windows](http://www.linux-kvm.org/page/WindowsGuestDrivers/Download_Drivers).
-
-Disable all <span id="result_box" class="short_text"><span
-class="hps trans-target-highlight">unnecessary</span></span> services
-and tasks. Restrict all unnecessary operating system operations.
-
-Remove all <span id="result_box" class="short_text"><span
-class="hps trans-target-highlight">unnecessary software and
-files.</span></span>
-
-<span id="result_box" class="short_text"><span
-class="hps trans-target-highlight"></span></span>Remove all paging
-space, swap files, partitions, etc.
-
-Shrink your image. (It is recommended to zero all free space and
-reconvert image using qemu-img.)
-
-### Modify your image for running jobs
-
-Your image should run some kind of operating system startup script.
-Startup script should run application and when application exits run
-shutdown or quit virtual machine.
-
-We recommend, that startup script
-
-maps Job Directory from host (from compute node)
-runs script (we call it "run script") from Job Directory and waits for
-application's exit
--   for management purposes if run script does not exist wait for some
-    time period (few minutes)
-
-shutdowns/quits OS
-For Windows operating systems we suggest using Local Group Policy
-Startup script, for Linux operating systems rc.local, runlevel init
-script or similar service.
-
-Example startup script for Windows virtual machine:
-
-    @echo off
-    set LOG=c:startup.log
-    set MAPDRIVE=z:
-    set SCRIPT=%MAPDRIVE%run.bat
-    set TIMEOUT=300
-
-    echo %DATE% %TIME% Running startup script>%LOG%
-
-    rem Mount share
-    echo %DATE% %TIME% Mounting shared drive>>%LOG%
-    net use z: 10.0.2.4qemu >>%LOG% 2>&1
-    dir z: >>%LOG% 2>&1
-    echo. >>%LOG%
-
-
-    if exist %MAPDRIVE% (
-      echo %DATE% %TIME% The drive "%MAPDRIVE%" exists>>%LOG%
-
-      if exist %SCRIPT% (
-        echo %DATE% %TIME% The script file "%SCRIPT%"exists>>%LOG%
-        echo %DATE% %TIME% Running script %SCRIPT%>>%LOG%
-        set TIMEOUT=0
-        call %SCRIPT%
-      ) else (
-        echo %DATE% %TIME% The script file "%SCRIPT%"does not exist>>%LOG%
-      )
-
-    ) else (
-      echo %DATE% %TIME% The drive "%MAPDRIVE%" does not exist>>%LOG%
-    )
-    echo. >>%LOG%
-
-    timeout /T %TIMEOUT%
-
-    echo %DATE% %TIME% Shut down>>%LOG%
-    shutdown /s /t 0
-
-Example startup script maps shared job script as drive z: and looks for
-run script called run.bat. If run script is found it is run else wait
-for 5 minutes, then shutdown virtual machine.
-
-### Create job script for executing virtual machine
-
-Create job script according recommended <span id="result_box"
-class="short_text"><span
-class="hps trans-target-highlight"></span></span>[Virtual Machine Job
-Workflow](virtualization/virtualization.html#virtual-machine-job-workflow).
-
-Example job for Windows virtual machine:
-
-    #/bin/sh
-
-    JOB_DIR=/scratch/$USER/win/$
-
-    #Virtual machine settings
-    VM_IMAGE=~/work/img/win.img
-    VM_MEMORY=49152
-    VM_SMP=16
-
-    # Prepare job dir
-    mkdir -p $ && cd $ || exit 1
-    ln -s ~/work/win .
-    ln -s /scratch/$USER/data .
-    ln -s ~/work/win/script/run/run-appl.bat run.bat
-
-    # Run virtual machine
-    export TMPDIR=/lscratch/$
-    module add qemu
-    qemu-system-x86_64 
-      -enable-kvm 
-      -cpu host 
-      -smp $ 
-      -m $ 
-      -vga std 
-      -localtime 
-      -usb -usbdevice tablet 
-      -device virtio-net-pci,netdev=net0 
-      -netdev user,id=net0,smb=$,hostfwd=tcp::3389-:3389 
-      -drive file=$,media=disk,if=virtio 
-      -snapshot 
-      -nographic
-
-Job script links application data (win), input data (data) and run
-script (run.bat) into job directory and runs virtual machine.
-
-Example run script (run.bat) for Windows virtual machine:
-
-    z:
-    cd winappl
-    call application.bat z:data z:output
-
-Run script runs application from shared job directory (mapped as drive
-z:), process input data (z:data) from job directory  and store output
-to job directory (z:output).
-
-### Run jobs
-
-Run jobs as usual, see  [Resource Allocation and Job
-Execution](../resource-allocation-and-job-execution/introduction.html).
-Use only full node allocation for virtualization jobs.
-
-### Running Virtual Machines
-
-Virtualization is enabled only on compute nodes, virtualization does not
-work on login nodes.
-
-Load QEMU environment module:
-
-    $ module add qemu
-
-Get help
-
-    $ man qemu
-
-Run virtual machine (simple)
-
-    $ qemu-system-x86_64 -hda linux.img -enable-kvm -cpu host -smp 16 -m 32768 -vga std -vnc :0
-
-    $ qemu-system-x86_64 -hda win.img   -enable-kvm -cpu host -smp 16 -m 32768 -vga std -localtime -usb -usbdevice tablet -vnc :0
-
-You can access virtual machine by VNC viewer (option -vnc) connecting to
-IP address of compute node. For VNC you must use [VPN
-network](../accessing-the-cluster/vpn-access.html).
-
-Install virtual machine from iso file
-
-    $ qemu-system-x86_64 -hda linux.img -enable-kvm -cpu host -smp 16 -m 32768 -vga std -cdrom linux-install.iso -boot d -vnc :0
-
-    $ qemu-system-x86_64 -hda win.img   -enable-kvm -cpu host -smp 16 -m 32768 -vga std -localtime -usb -usbdevice tablet -cdrom win-install.iso -boot d -vnc :0
-
-Run virtual machine using optimized devices, user network backend with
-sharing and port forwarding, in snapshot mode
-
-    $ qemu-system-x86_64 -drive file=linux.img,media=disk,if=virtio -enable-kvm -cpu host -smp 16 -m 32768 -vga std -device virtio-net-pci,netdev=net0 -netdev user,id=net0,smb=/scratch/$USER/tmp,hostfwd=tcp::2222-:22 -vnc :0 -snapshot
-
-    $ qemu-system-x86_64 -drive file=win.img,media=disk,if=virtio -enable-kvm -cpu host -smp 16 -m 32768 -vga std -localtime -usb -usbdevice tablet -device virtio-net-pci,netdev=net0 -netdev user,id=net0,smb=/scratch/$USER/tmp,hostfwd=tcp::3389-:3389 -vnc :0 -snapshot
-
-Thanks to port forwarding you can access virtual machine via SSH (Linux)
-or RDP (Windows) connecting to IP address of compute node (and port 2222
-for SSH). You must use [VPN
-network](../accessing-the-cluster/vpn-access.html).
-
-Keep in mind, that if you use virtio devices, you must have virtio
-drivers installed on your virtual machine.
-
-### Networking and data sharing
-
-For networking virtual machine we suggest to use (default) user network
-backend (sometimes called slirp). This network backend NATs virtual
-machines and provides useful services for virtual machines as DHCP, DNS,
-SMB sharing, port forwarding.
-
-In default configuration IP network 10.0.2.0/24 is used, host has IP
-address 10.0.2.2, DNS server 10.0.2.3, SMB server 10.0.2.4 and virtual
-machines obtain address from range 10.0.2.15-10.0.2.31. Virtual machines
-have access to Anselm's network via NAT on compute node (host).
-
-Simple network setup
-
-    $ qemu-system-x86_64 ... -net nic -net user
-
-(It is default when no -net options are given.)
-
-Simple network setup with sharing and port forwarding (obsolete but
-simpler syntax, lower performance)
-
-    $ qemu-system-x86_64 ... -net nic -net user,smb=/scratch/$USER/tmp,hostfwd=tcp::3389-:3389
-
-Optimized network setup with sharing and port forwarding
-
-    $ qemu-system-x86_64 ... -device virtio-net-pci,netdev=net0 -netdev user,id=net0,smb=/scratch/$USER/tmp,hostfwd=tcp::2222-:22
-
-### Advanced networking
-
-**Internet access**
-
-Sometime your virtual machine needs access to internet (install
-software, updates, software activation, etc). We suggest solution using
-Virtual Distributed Ethernet (VDE) enabled QEMU with SLIRP running on
-login node tunnelled to compute node. Be aware, this setup has very low
-performance, the worst performance of all described solutions.
-
-Load VDE enabled QEMU environment module (unload standard QEMU module
-first if necessary).
-
-    $ module add qemu/2.1.2-vde2
-
-Create virtual network switch.
-
-    $ vde_switch -sock /tmp/sw0 -mgmt /tmp/sw0.mgmt -daemon
-
-Run SLIRP daemon over SSH tunnel on login node and connect it to virtual
-network switch.
-
-    $ dpipe vde_plug /tmp/sw0 = ssh login1 $VDE2_DIR/bin/slirpvde -s - --dhcp &
-
-Run qemu using vde network backend, connect to created virtual switch.
-
-Basic setup (obsolete syntax)
-
-    $ qemu-system-x86_64 ... -net nic -net vde,sock=/tmp/sw0
-
-Setup using virtio device (obsolete syntax)
-
-    $ qemu-system-x86_64 ... -net nic,model=virtio -net vde,sock=/tmp/sw0
-
-Optimized setup
-
-    $ qemu-system-x86_64 ... -device virtio-net-pci,netdev=net0 -netdev vde,id=net0,sock=/tmp/sw0
-
-**
-**
-
-**TAP interconnect**
-
-Both user and vde network backend have low performance. For fast
-interconnect (10Gbps and more) of compute node (host) and virtual
-machine (guest) we suggest using Linux kernel TAP device.
-
-Cluster Anselm provides TAP device tap0 for your job. TAP interconnect
-does not provide any services (like NAT, DHCP, DNS, SMB, etc.) just raw
-networking, so you should provide your services if you need them.
-
-Run qemu with TAP network backend:
-
-    $ qemu-system-x86_64 ... -device virtio-net-pci,netdev=net1 
-                           -netdev tap,id=net1,ifname=tap0,script=no,downscript=no
-
-Interface tap0 has IP address 192.168.1.1 and network mask 255.255.255.0
-(/24). In virtual machine use IP address from range
-192.168.1.2-192.168.1.254. For your convenience some ports on tap0
-interface are redirected to higher numbered ports, so you as
-non-privileged user can provide services on these ports.
-
-Redirected ports:
-
--   DNS udp/53-&gt;udp/3053, tcp/53-&gt;tcp3053
--   DHCP udp/67-&gt;udp3067
--   SMB tcp/139-&gt;tcp3139, tcp/445-&gt;tcp3445).
-
-You can configure IP address of virtual machine statically or
-dynamically. For dynamic addressing provide your DHCP server on port
-3067 of tap0 interface, you can also provide your DNS server on port
-3053 of tap0 interface for example:
-
-    $ dnsmasq --interface tap0 --bind-interfaces -p 3053 --dhcp-alternate-port=3067,68 --dhcp-range=192.168.1.15,192.168.1.32 --dhcp-leasefile=/tmp/dhcp.leasefile
-
-You can also provide your SMB services (on ports 3139, 3445) to obtain
-high performance data sharing.
-
-Example smb.conf (not optimized)
-
-    [global]
-    socket address=192.168.1.1
-    smb ports = 3445 3139
-
-    private dir=/tmp/qemu-smb
-    pid directory=/tmp/qemu-smb
-    lock directory=/tmp/qemu-smb
-    state directory=/tmp/qemu-smb
-    ncalrpc dir=/tmp/qemu-smb/ncalrpc
-    log file=/tmp/qemu-smb/log.smbd
-    smb passwd file=/tmp/qemu-smb/smbpasswd
-    security = user
-    map to guest = Bad User
-    unix extensions = no
-    load printers = no
-    printing = bsd
-    printcap name = /dev/null
-    disable spoolss = yes
-    log level = 1
-    guest account = USER
-    [qemu]
-    path=/scratch/USER/tmp
-    read only=no
-    guest ok=yes
-    writable=yes
-    follow symlinks=yes
-    wide links=yes
-    force user=USER
-
-(Replace USER with your login name.)
-
-Run SMB services
-
-    smbd -s /tmp/qemu-smb/smb.conf
-
- 
-
-Virtual machine can of course have more than one network interface
-controller, virtual machine can use more than one network backend. So,
-you can combine for example use network backend and TAP interconnect.
-
-### []()Snapshot mode
-
-In snapshot mode image is not written, changes are written to temporary
-file (and discarded after virtual machine exits). **It is strongly
-recommended mode for running your jobs.** Set TMPDIR environment
-variable to local scratch directory for placement temporary files.
-
-    $ export TMPDIR=/lscratch/$
-    $ qemu-system-x86_64 ... -snapshot
-
-### Windows guests
-
-For Windows guests we recommend these options, life will be easier:
-
-    $ qemu-system-x86_64 ... -localtime -usb -usbdevice tablet
-
-
diff --git a/docs.it4i.cz/anselm-cluster-documentation/software/virtualization/virtualization-job-workflow b/docs.it4i.cz/anselm-cluster-documentation/software/virtualization/virtualization-job-workflow
deleted file mode 100644
index f5602dd43de3879f6599a84170a7156100c27302..0000000000000000000000000000000000000000
Binary files a/docs.it4i.cz/anselm-cluster-documentation/software/virtualization/virtualization-job-workflow and /dev/null differ
diff --git a/docs.it4i.cz/anselm-cluster-documentation/storage-1.md b/docs.it4i.cz/anselm-cluster-documentation/storage-1.md
deleted file mode 100644
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@@ -1,509 +0,0 @@
-Storage 
-=======
-
-
-
-  
-
-There are two main shared file systems on Anselm cluster, the
-[HOME](storage.html#home) and
-[SCRATCH](storage.html#scratch). All login and compute
-nodes may access same data on shared filesystems. Compute nodes are also
-equipped with local (non-shared) scratch, ramdisk and tmp filesystems.
-
-Archiving
----------
-
-Please don't use shared filesystems as a backup for large amount of data
-or long-term archiving mean. The academic staff and students of research
-institutions in the Czech Republic can use [CESNET storage
-service](storage-1/cesnet-data-storage.html), which is
-available via SSHFS.
-
-Shared Filesystems
-------------------
-
-Anselm computer provides two main shared filesystems, the [HOME
-filesystem](storage.html#home) and the [SCRATCH
-filesystem](storage.html#scratch). Both HOME and SCRATCH
-filesystems are realized as a parallel Lustre filesystem. Both shared
-file systems are accessible via the Infiniband network. Extended ACLs
-are provided on both Lustre filesystems for the purpose of sharing data
-with other users using fine-grained control.
-
-### Understanding the Lustre Filesystems
-
-(source <http://www.nas.nasa.gov>)
-
-A user file on the Lustre filesystem can be divided into multiple chunks
-(stripes) and stored across a subset of the object storage targets
-(OSTs) (disks). The stripes are distributed among the OSTs in a
-round-robin fashion to ensure load balancing.
-
-When a client (a <span class="glossaryItem">compute <span
-class="glossaryItem">node</span></span> from your job) needs to create
-or access a file, the client queries the metadata server (<span
-class="glossaryItem">MDS</span>) and the metadata target (<span
-class="glossaryItem">MDT</span>) for the layout and location of the
-[file's
-stripes](http://www.nas.nasa.gov/hecc/support/kb/Lustre_Basics_224.html#striping).
-Once the file is opened and the client obtains the striping information,
-the <span class="glossaryItem">MDS</span> is no longer involved in the
-file I/O process. The client interacts directly with the object storage
-servers (OSSes) and OSTs to perform I/O operations such as locking, disk
-allocation, storage, and retrieval.
-
-If multiple clients try to read and write the same part of a file at the
-same time, the Lustre distributed lock manager enforces coherency so
-that all clients see consistent results.
-
-There is default stripe configuration for Anselm Lustre filesystems.
-However, users can set the following stripe parameters for their own
-directories or files to get optimum I/O performance:
-
-1.  stripe_size: the size of the chunk in bytes; specify with k, m, or
-    g to use units of KB, MB, or GB, respectively; the size must be an
-    even multiple of 65,536 bytes; default is 1MB for all Anselm Lustre
-    filesystems
-2.  stripe_count the number of OSTs to stripe across; default is 1 for
-    Anselm Lustre filesystems  one can specify -1 to use all OSTs in
-    the filesystem.
-3.  stripe_offset The index of the <span
-    class="glossaryItem">OST</span> where the first stripe is to be
-    placed; default is -1 which results in random selection; using a
-    non-default value is NOT recommended.
-
- 
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-Use the lfs getstripe for getting the stripe parameters. Use the lfs
-setstripe command for setting the stripe parameters to get optimal I/O
-performance The correct stripe setting depends on your needs and file
-access patterns. 
-
-``` 
-$ lfs getstripe dir|filename 
-$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename 
-```
-
-Example:
-
-``` 
-$ lfs getstripe /scratch/username/
-/scratch/username/
-stripe_count:   1 stripe_size:    1048576 stripe_offset:  -1
-
-$ lfs setstripe -c -1 /scratch/username/
-$ lfs getstripe /scratch/username/
-/scratch/username/
-stripe_count:  10 stripe_size:    1048576 stripe_offset:  -1
-```
-
-In this example, we view current stripe setting of the
-/scratch/username/ directory. The stripe count is changed to all OSTs,
-and verified. All files written to this directory will be striped over
-10 OSTs
-
-Use lfs check OSTs to see the number and status of active OSTs for each
-filesystem on Anselm. Learn more by reading the man page
-
-``` 
-$ lfs check osts
-$ man lfs
-```
-
-### Hints on Lustre Stripping
-
-Increase the stripe_count for parallel I/O to the same file.
-
-When multiple processes are writing blocks of data to the same file in
-parallel, the I/O performance for large files will improve when the
-stripe_count is set to a larger value. The stripe count sets the number
-of OSTs the file will be written to. By default, the stripe count is set
-to 1. While this default setting provides for efficient access of
-metadata (for example to support the ls -l command), large files should
-use stripe counts of greater than 1. This will increase the aggregate
-I/O bandwidth by using multiple OSTs in parallel instead of just one. A
-rule of thumb is to use a stripe count approximately equal to the number
-of gigabytes in the file.
-
-Another good practice is to make the stripe count be an integral factor
-of the number of processes performing the write in parallel, so that you
-achieve load balance among the OSTs. For example, set the stripe count
-to 16 instead of 15 when you have 64 processes performing the writes.
-
-Using a large stripe size can improve performance when accessing very
-large files
-
-Large stripe size allows each client to have exclusive access to its own
-part of a file. However, it can be counterproductive in some cases if it
-does not match your I/O pattern. The choice of stripe size has no effect
-on a single-stripe file.
-
-Read more on
-<http://wiki.lustre.org/manual/LustreManual20_HTML/ManagingStripingFreeSpace.html>
-
-### Lustre on Anselm
-
-The  architecture of Lustre on Anselm is composed of two metadata
-servers (MDS) and four data/object storage servers (OSS). Two object
-storage servers are used for file system HOME and another two object
-storage servers are used for file system SCRATCH.
-
-<span class="emphasis">Configuration of the storages</span>
-
-
--   <span class="emphasis">HOME Lustre object storage</span>
-    <div class="itemizedlist">
-
-    -   One disk array NetApp E5400
-    -   22 OSTs
-    -   227 2TB NL-SAS 7.2krpm disks
-    -   22 groups of 10 disks in RAID6 (8+2)
-    -   7 hot-spare disks
-
-    
-
--   <span class="emphasis">SCRATCH Lustre object storage</span>
-    <div class="itemizedlist">
-
-    -   Two disk arrays NetApp E5400
-    -   10 OSTs
-    -   106 2TB NL-SAS 7.2krpm disks
-    -   10 groups of 10 disks in RAID6 (8+2)
-    -   6 hot-spare disks
-
-    
-
--   <span class="emphasis">Lustre metadata storage</span>
-    <div class="itemizedlist">
-
-    -   One disk array NetApp E2600
-    -   12 300GB SAS 15krpm disks
-    -   2 groups of 5 disks in RAID5
-    -   2 hot-spare disks
-
-    
-
-
-
-### []()[]()HOME
-
-The HOME filesystem is mounted in directory /home. Users home
-directories /home/username reside on this filesystem. Accessible
-capacity is 320TB, shared among all users. Individual users are
-restricted by filesystem usage quotas, set to 250GB per user. <span>If
-250GB should prove as insufficient for particular user, please
-contact</span> [support](https://support.it4i.cz/rt),
-the quota may be lifted upon request.
-
-The HOME filesystem is intended for preparation, evaluation, processing
-and storage of data generated by active Projects.
-
-The HOME filesystem should not be used to archive data of past Projects
-or other unrelated data.
-
-The files on HOME filesystem will not be deleted until end of the [users
-lifecycle](../get-started-with-it4innovations/obtaining-login-credentials/obtaining-login-credentials.html).
-
-The filesystem is backed up, such that it can be restored in case of 
-catasthropic failure resulting in significant data loss. This backup
-however is not intended to restore old versions of user data or to
-restore (accidentaly) deleted files. 
-
-The HOME filesystem is realized as Lustre parallel filesystem and is
-available on all login and computational nodes.
-Default stripe size is 1MB, stripe count is 1. There are 22 OSTs
-dedicated for the HOME filesystem.
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-HOME filesystem
-Mountpoint
-/home
-Capacity
-320TB
-Throughput
-2GB/s
-User quota
-250GB
-Default stripe size
-1MB
-Default stripe count
-1
-Number of OSTs
-22
-### []()[]()SCRATCH
-
-The SCRATCH filesystem is mounted in directory /scratch. Users may
-freely create subdirectories and files on the filesystem. Accessible
-capacity is 146TB, shared among all users. Individual users are
-restricted by filesystem usage quotas, set to 100TB per user. The
-purpose of this quota is to prevent runaway programs from filling the
-entire filesystem and deny service to other users. <span>If 100TB should
-prove as insufficient for particular user, please contact
-[support](https://support.it4i.cz/rt), the quota may be
-lifted upon request. </span>
-
-The Scratch filesystem is intended  for temporary scratch data generated
-during the calculation as well as for high performance access to input
-and output files. All I/O intensive jobs must use the SCRATCH filesystem
-as their working directory.
-
-Users are advised to save the necessary data from the SCRATCH filesystem
-to HOME filesystem after the calculations and clean up the scratch
-files.
-
-Files on the SCRATCH filesystem that are **not accessed for more than 90
-days** will be automatically **deleted**.
-
-The SCRATCH filesystem is realized as Lustre parallel filesystem and is
-available from all login and computational nodes.
-Default stripe size is 1MB, stripe count is 1. There are 10 OSTs
-dedicated for the SCRATCH filesystem.
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-SCRATCH filesystem
-Mountpoint
-/scratch
-Capacity
-146TB
-Throughput
-6GB/s
-User quota
-100TB
-Default stripe size
-1MB
-Default stripe count
-1
-Number of OSTs
-10
-### <span>Disk usage and quota commands</span>
-
-<span>User quotas on the file systems can be checked and reviewed using
-following command:</span>
-
-``` 
-$ lfs quota dir
-```
-
-Example for Lustre HOME directory:
-
-``` 
-$ lfs quota /home
-Disk quotas for user user001 (uid 1234):
-    Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-         /home  300096       0 250000000       -    2102       0  500000    -
-Disk quotas for group user001 (gid 1234):
-    Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-        /home  300096       0       0       -    2102       0       0       -
-```
-
-In this example, we view current quota size limit of 250GB and 300MB
-currently used by user001.
-
-Example for Lustre SCRATCH directory:
-
-``` 
-$ lfs quota /scratch
-Disk quotas for user user001 (uid 1234):
-     Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-          /scratch       8       0 100000000000       -       3       0       0       -
-Disk quotas for group user001 (gid 1234):
- Filesystem kbytes quota limit grace files quota limit grace
- /scratch       8       0       0       -       3       0       0       -
-```
-
-In this example, we view current quota size limit of 100TB and 8KB
-currently used by user001.
-
- 
-
-To have a better understanding of where the space is exactly used, you
-can use following command to find out.
-
-``` 
-$ du -hs dir
-```
-
-Example for your HOME directory:
-
-``` 
-$ cd /home
-$ du -hs * .[a-zA-z0-9]* | grep -E "[0-9]*G|[0-9]*M" | sort -hr
-258M     cuda-samples
-15M      .cache
-13M      .mozilla
-5,5M     .eclipse
-2,7M     .idb_13.0_linux_intel64_app
-```
-
-This will list all directories which are having MegaBytes or GigaBytes
-of consumed space in your actual (in this example HOME) directory. List
-is sorted in descending order from largest to smallest
-files/directories.
-
-
-<span>To have a better understanding of previous commands, you can read
-manpages.</span>
-
-``` 
-$ man lfs
-```
-
-``` 
-$ man du 
-```
-
-### Extended ACLs
-
-Extended ACLs provide another security mechanism beside the standard
-POSIX ACLs which are defined by three entries (for
-owner/group/others). Extended ACLs have more than the three basic
-entries. In addition, they also contain a mask entry and may contain any
-number of named user and named group entries.
-
-ACLs on a Lustre file system work exactly like ACLs on any Linux file
-system. They are manipulated with the standard tools in the standard
-manner. Below, we create a directory and allow a specific user access.
-
-``` 
-[vop999@login1.anselm ~]$ umask 027
-[vop999@login1.anselm ~]$ mkdir test
-[vop999@login1.anselm ~]$ ls -ld test
-drwxr-x--- 2 vop999 vop999 4096 Nov  5 14:17 test
-[vop999@login1.anselm ~]$ getfacl test
-# file: test
-# owner: vop999
-# group: vop999
-user::rwx
-group::r-x
-other::---
-
-[vop999@login1.anselm ~]$ setfacl -m user:johnsm:rwx test
-[vop999@login1.anselm ~]$ ls -ld test
-drwxrwx---+ 2 vop999 vop999 4096 Nov  5 14:17 test
-[vop999@login1.anselm ~]$ getfacl test
-# file: test
-# owner: vop999
-# group: vop999
-user::rwx
-user:johnsm:rwx
-group::r-x
-mask::rwx
-other::---
-```
-
-Default ACL mechanism can be used to replace setuid/setgid permissions
-on directories. Setting a default ACL on a directory (-d flag to
-setfacl) will cause the ACL permissions to be inherited by any newly
-created file or subdirectory within the directory. Refer to this page
-for more information on Linux ACL:
-
-[http://www.vanemery.com/Linux/ACL/POSIX_ACL_on_Linux.html ](http://www.vanemery.com/Linux/ACL/POSIX_ACL_on_Linux.html)
-
-Local Filesystems
------------------
-
-### Local Scratch
-
-Every computational node is equipped with 330GB local scratch disk.
-
-Use local scratch in case you need to access large amount of small files
-during your calculation.
-
-[]()The local scratch disk is mounted as /lscratch and is accessible to
-user at /lscratch/$PBS_JOBID directory.
-
-The local scratch filesystem is intended  for temporary scratch data
-generated during the calculation as well as for high performance access
-to input and output files. All I/O intensive jobs that access large
-number of small files within the calculation must use the local scratch
-filesystem as their working directory. This is required for performance
-reasons, as frequent access to number of small files may overload the
-metadata servers (MDS) of the Lustre filesystem.
-
-The local scratch directory /lscratch/$PBS_JOBID will be deleted
-immediately after the calculation end. Users should take care to save
-the output data from within the jobscript.
-
-local SCRATCH filesystem
-Mountpoint
-/lscratch
-Accesspoint
-/lscratch/$PBS_JOBID
-Capacity
-330GB
-Throughput
-100MB/s
-User quota
-none
-### RAM disk
-
-Every computational node is equipped with filesystem realized in memory,
-so called RAM disk.
-
-Use RAM disk in case you need really fast access to your data of limited
-size during your calculation.
-Be very careful, use of RAM disk filesystem is at the expense of
-operational memory.
-
-[]()The local RAM disk is mounted as /ramdisk and is accessible to user
-at /ramdisk/$PBS_JOBID directory.
-
-The local RAM disk filesystem is intended for temporary scratch data
-generated during the calculation as well as for high performance access
-to input and output files. Size of RAM disk filesystem is limited. Be
-very careful, use of RAM disk filesystem is at the expense of
-operational memory.  It is not recommended to allocate large amount of
-memory and use large amount of data in RAM disk filesystem at the same
-time.
-
-The local RAM disk directory /ramdisk/$PBS_JOBID will be deleted
-immediately after the calculation end. Users should take care to save
-the output data from within the jobscript.
-
-RAM disk
-Mountpoint
-<span class="monospace">/ramdisk</span>
-Accesspoint
-<span class="monospace">/ramdisk/$PBS_JOBID</span>
-Capacity
-60GB at compute nodes without accelerator
-
-90GB at compute nodes with accelerator
-
-500GB at fat nodes
-
-Throughput
-over 1.5 GB/s write, over 5 GB/s read, single thread
-over 10 GB/s write, over 50 GB/s read, 16 threads
-
-User quota
-none
-### tmp
-
-Each node is equipped with local /tmp directory of few GB capacity. The
-/tmp directory should be used to work with small temporary files. Old
-files in /tmp directory are automatically purged.
-
-
-**Summary
-**
-----------
-
-
-  Mountpoint                                 Usage                       Protocol   Net Capacity     Throughput   Limitations   Access                    Services
-  ------------------------------------------ --------------------------- ---------- ---------------- ------------ ------------- ------------------------- -----------------------------
-  <span class="monospace">/home</span>       home directory              Lustre     320 TiB          2 GB/s       Quota 250GB   Compute and login nodes   backed up
-  <span class="monospace">/scratch</span>    cluster shared jobs' data   Lustre     146 TiB          6 GB/s       Quota 100TB   Compute and login nodes   files older 90 days removed
-  <span class="monospace">/lscratch</span>   node local jobs' data       local      330 GB           100 MB/s     none          Compute nodes             purged after job ends
-  <span class="monospace">/ramdisk</span>    node local jobs' data       local      60, 90, 500 GB   5-50 GB/s    none          Compute nodes             purged after job ends
-  <span class="monospace">/tmp</span>        local temporary files       local                       100 MB/s     none          Compute and login nodes   auto purged
-
- 
diff --git a/docs.it4i.cz/anselm-cluster-documentation/storage.md b/docs.it4i.cz/anselm-cluster-documentation/storage.md
deleted file mode 100644
index 56438ce18cef14f3776adcecbf0b03c8affa537e..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm-cluster-documentation/storage.md
+++ /dev/null
@@ -1,509 +0,0 @@
-Storage 
-=======
-
-
-
-  
-
-There are two main shared file systems on Anselm cluster, the
-[HOME](storage.html#home) and
-[SCRATCH](storage.html#scratch). All login and compute
-nodes may access same data on shared filesystems. Compute nodes are also
-equipped with local (non-shared) scratch, ramdisk and tmp filesystems.
-
-Archiving
----------
-
-Please don't use shared filesystems as a backup for large amount of data
-or long-term archiving mean. The academic staff and students of research
-institutions in the Czech Republic can use [CESNET storage
-service](storage-1/cesnet-data-storage.html), which is
-available via SSHFS.
-
-Shared Filesystems
-------------------
-
-Anselm computer provides two main shared filesystems, the [HOME
-filesystem](storage.html#home) and the [SCRATCH
-filesystem](storage.html#scratch). Both HOME and SCRATCH
-filesystems are realized as a parallel Lustre filesystem. Both shared
-file systems are accessible via the Infiniband network. Extended ACLs
-are provided on both Lustre filesystems for the purpose of sharing data
-with other users using fine-grained control.
-
-### Understanding the Lustre Filesystems
-
-(source <http://www.nas.nasa.gov>)
-
-A user file on the Lustre filesystem can be divided into multiple chunks
-(stripes) and stored across a subset of the object storage targets
-(OSTs) (disks). The stripes are distributed among the OSTs in a
-round-robin fashion to ensure load balancing.
-
-When a client (a <span class="glossaryItem">compute <span
-class="glossaryItem">node</span></span> from your job) needs to create
-or access a file, the client queries the metadata server (<span
-class="glossaryItem">MDS</span>) and the metadata target (<span
-class="glossaryItem">MDT</span>) for the layout and location of the
-[file's
-stripes](http://www.nas.nasa.gov/hecc/support/kb/Lustre_Basics_224.html#striping).
-Once the file is opened and the client obtains the striping information,
-the <span class="glossaryItem">MDS</span> is no longer involved in the
-file I/O process. The client interacts directly with the object storage
-servers (OSSes) and OSTs to perform I/O operations such as locking, disk
-allocation, storage, and retrieval.
-
-If multiple clients try to read and write the same part of a file at the
-same time, the Lustre distributed lock manager enforces coherency so
-that all clients see consistent results.
-
-There is default stripe configuration for Anselm Lustre filesystems.
-However, users can set the following stripe parameters for their own
-directories or files to get optimum I/O performance:
-
-1.  stripe_size: the size of the chunk in bytes; specify with k, m, or
-    g to use units of KB, MB, or GB, respectively; the size must be an
-    even multiple of 65,536 bytes; default is 1MB for all Anselm Lustre
-    filesystems
-2.  stripe_count the number of OSTs to stripe across; default is 1 for
-    Anselm Lustre filesystems  one can specify -1 to use all OSTs in
-    the filesystem.
-3.  stripe_offset The index of the <span
-    class="glossaryItem">OST</span> where the first stripe is to be
-    placed; default is -1 which results in random selection; using a
-    non-default value is NOT recommended.
-
- 
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-Use the lfs getstripe for getting the stripe parameters. Use the lfs
-setstripe command for setting the stripe parameters to get optimal I/O
-performance The correct stripe setting depends on your needs and file
-access patterns. 
-
-``` 
-$ lfs getstripe dir|filename 
-$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename 
-```
-
-Example:
-
-``` 
-$ lfs getstripe /scratch/username/
-/scratch/username/
-stripe_count:   1 stripe_size:    1048576 stripe_offset:  -1
-
-$ lfs setstripe -c -1 /scratch/username/
-$ lfs getstripe /scratch/username/
-/scratch/username/
-stripe_count:  10 stripe_size:    1048576 stripe_offset:  -1
-```
-
-In this example, we view current stripe setting of the
-/scratch/username/ directory. The stripe count is changed to all OSTs,
-and verified. All files written to this directory will be striped over
-10 OSTs
-
-Use lfs check OSTs to see the number and status of active OSTs for each
-filesystem on Anselm. Learn more by reading the man page
-
-``` 
-$ lfs check osts
-$ man lfs
-```
-
-### Hints on Lustre Stripping
-
-Increase the stripe_count for parallel I/O to the same file.
-
-When multiple processes are writing blocks of data to the same file in
-parallel, the I/O performance for large files will improve when the
-stripe_count is set to a larger value. The stripe count sets the number
-of OSTs the file will be written to. By default, the stripe count is set
-to 1. While this default setting provides for efficient access of
-metadata (for example to support the ls -l command), large files should
-use stripe counts of greater than 1. This will increase the aggregate
-I/O bandwidth by using multiple OSTs in parallel instead of just one. A
-rule of thumb is to use a stripe count approximately equal to the number
-of gigabytes in the file.
-
-Another good practice is to make the stripe count be an integral factor
-of the number of processes performing the write in parallel, so that you
-achieve load balance among the OSTs. For example, set the stripe count
-to 16 instead of 15 when you have 64 processes performing the writes.
-
-Using a large stripe size can improve performance when accessing very
-large files
-
-Large stripe size allows each client to have exclusive access to its own
-part of a file. However, it can be counterproductive in some cases if it
-does not match your I/O pattern. The choice of stripe size has no effect
-on a single-stripe file.
-
-Read more on
-<http://wiki.lustre.org/manual/LustreManual20_HTML/ManagingStripingFreeSpace.html>
-
-### Lustre on Anselm
-
-The  architecture of Lustre on Anselm is composed of two metadata
-servers (MDS) and four data/object storage servers (OSS). Two object
-storage servers are used for file system HOME and another two object
-storage servers are used for file system SCRATCH.
-
-<span class="emphasis">Configuration of the storages</span>
-
-
--   <span class="emphasis">HOME Lustre object storage</span>
-    <div class="itemizedlist">
-
-    -   One disk array NetApp E5400
-    -   22 OSTs
-    -   227 2TB NL-SAS 7.2krpm disks
-    -   22 groups of 10 disks in RAID6 (8+2)
-    -   7 hot-spare disks
-
-    
-
--   <span class="emphasis">SCRATCH Lustre object storage</span>
-    <div class="itemizedlist">
-
-    -   Two disk arrays NetApp E5400
-    -   10 OSTs
-    -   106 2TB NL-SAS 7.2krpm disks
-    -   10 groups of 10 disks in RAID6 (8+2)
-    -   6 hot-spare disks
-
-    
-
--   <span class="emphasis">Lustre metadata storage</span>
-    <div class="itemizedlist">
-
-    -   One disk array NetApp E2600
-    -   12 300GB SAS 15krpm disks
-    -   2 groups of 5 disks in RAID5
-    -   2 hot-spare disks
-
-    
-
-
-
-### []()[]()HOME
-
-The HOME filesystem is mounted in directory /home. Users home
-directories /home/username reside on this filesystem. Accessible
-capacity is 320TB, shared among all users. Individual users are
-restricted by filesystem usage quotas, set to 250GB per user. <span>If
-250GB should prove as insufficient for particular user, please
-contact</span> [support](https://support.it4i.cz/rt),
-the quota may be lifted upon request.
-
-The HOME filesystem is intended for preparation, evaluation, processing
-and storage of data generated by active Projects.
-
-The HOME filesystem should not be used to archive data of past Projects
-or other unrelated data.
-
-The files on HOME filesystem will not be deleted until end of the [users
-lifecycle](../get-started-with-it4innovations/obtaining-login-credentials/obtaining-login-credentials.html).
-
-The filesystem is backed up, such that it can be restored in case of 
-catasthropic failure resulting in significant data loss. This backup
-however is not intended to restore old versions of user data or to
-restore (accidentaly) deleted files. 
-
-The HOME filesystem is realized as Lustre parallel filesystem and is
-available on all login and computational nodes.
-Default stripe size is 1MB, stripe count is 1. There are 22 OSTs
-dedicated for the HOME filesystem.
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-HOME filesystem
-Mountpoint
-/home
-Capacity
-320TB
-Throughput
-2GB/s
-User quota
-250GB
-Default stripe size
-1MB
-Default stripe count
-1
-Number of OSTs
-22
-### []()[]()SCRATCH
-
-The SCRATCH filesystem is mounted in directory /scratch. Users may
-freely create subdirectories and files on the filesystem. Accessible
-capacity is 146TB, shared among all users. Individual users are
-restricted by filesystem usage quotas, set to 100TB per user. The
-purpose of this quota is to prevent runaway programs from filling the
-entire filesystem and deny service to other users. <span>If 100TB should
-prove as insufficient for particular user, please contact
-[support](https://support.it4i.cz/rt), the quota may be
-lifted upon request. </span>
-
-The Scratch filesystem is intended  for temporary scratch data generated
-during the calculation as well as for high performance access to input
-and output files. All I/O intensive jobs must use the SCRATCH filesystem
-as their working directory.
-
-Users are advised to save the necessary data from the SCRATCH filesystem
-to HOME filesystem after the calculations and clean up the scratch
-files.
-
-Files on the SCRATCH filesystem that are **not accessed for more than 90
-days** will be automatically **deleted**.
-
-The SCRATCH filesystem is realized as Lustre parallel filesystem and is
-available from all login and computational nodes.
-Default stripe size is 1MB, stripe count is 1. There are 10 OSTs
-dedicated for the SCRATCH filesystem.
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-SCRATCH filesystem
-Mountpoint
-/scratch
-Capacity
-146TB
-Throughput
-6GB/s
-User quota
-100TB
-Default stripe size
-1MB
-Default stripe count
-1
-Number of OSTs
-10
-### <span>Disk usage and quota commands</span>
-
-<span>User quotas on the file systems can be checked and reviewed using
-following command:</span>
-
-``` 
-$ lfs quota dir
-```
-
-Example for Lustre HOME directory:
-
-``` 
-$ lfs quota /home
-Disk quotas for user user001 (uid 1234):
-    Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-         /home  300096       0 250000000       -    2102       0  500000    -
-Disk quotas for group user001 (gid 1234):
-    Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-        /home  300096       0       0       -    2102       0       0       -
-```
-
-In this example, we view current quota size limit of 250GB and 300MB
-currently used by user001.
-
-Example for Lustre SCRATCH directory:
-
-``` 
-$ lfs quota /scratch
-Disk quotas for user user001 (uid 1234):
-     Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-          /scratch       8       0 100000000000       -       3       0       0       -
-Disk quotas for group user001 (gid 1234):
- Filesystem kbytes quota limit grace files quota limit grace
- /scratch       8       0       0       -       3       0       0       -
-```
-
-In this example, we view current quota size limit of 100TB and 8KB
-currently used by user001.
-
- 
-
-To have a better understanding of where the space is exactly used, you
-can use following command to find out.
-
-``` 
-$ du -hs dir
-```
-
-Example for your HOME directory:
-
-``` 
-$ cd /home
-$ du -hs * .[a-zA-z0-9]* | grep -E "[0-9]*G|[0-9]*M" | sort -hr
-258M     cuda-samples
-15M      .cache
-13M      .mozilla
-5,5M     .eclipse
-2,7M     .idb_13.0_linux_intel64_app
-```
-
-This will list all directories which are having MegaBytes or GigaBytes
-of consumed space in your actual (in this example HOME) directory. List
-is sorted in descending order from largest to smallest
-files/directories.
-
-
-<span>To have a better understanding of previous commands, you can read
-manpages.</span>
-
-``` 
-$ man lfs
-```
-
-``` 
-$ man du 
-```
-
-### Extended ACLs
-
-Extended ACLs provide another security mechanism beside the standard
-POSIX ACLs which are defined by three entries (for
-owner/group/others). Extended ACLs have more than the three basic
-entries. In addition, they also contain a mask entry and may contain any
-number of named user and named group entries.
-
-ACLs on a Lustre file system work exactly like ACLs on any Linux file
-system. They are manipulated with the standard tools in the standard
-manner. Below, we create a directory and allow a specific user access.
-
-``` 
-[vop999@login1.anselm ~]$ umask 027
-[vop999@login1.anselm ~]$ mkdir test
-[vop999@login1.anselm ~]$ ls -ld test
-drwxr-x--- 2 vop999 vop999 4096 Nov  5 14:17 test
-[vop999@login1.anselm ~]$ getfacl test
-# file: test
-# owner: vop999
-# group: vop999
-user::rwx
-group::r-x
-other::---
-
-[vop999@login1.anselm ~]$ setfacl -m user:johnsm:rwx test
-[vop999@login1.anselm ~]$ ls -ld test
-drwxrwx---+ 2 vop999 vop999 4096 Nov  5 14:17 test
-[vop999@login1.anselm ~]$ getfacl test
-# file: test
-# owner: vop999
-# group: vop999
-user::rwx
-user:johnsm:rwx
-group::r-x
-mask::rwx
-other::---
-```
-
-Default ACL mechanism can be used to replace setuid/setgid permissions
-on directories. Setting a default ACL on a directory (-d flag to
-setfacl) will cause the ACL permissions to be inherited by any newly
-created file or subdirectory within the directory. Refer to this page
-for more information on Linux ACL:
-
-[http://www.vanemery.com/Linux/ACL/POSIX_ACL_on_Linux.html ](http://www.vanemery.com/Linux/ACL/POSIX_ACL_on_Linux.html)
-
-Local Filesystems
------------------
-
-### Local Scratch
-
-Every computational node is equipped with 330GB local scratch disk.
-
-Use local scratch in case you need to access large amount of small files
-during your calculation.
-
-[]()The local scratch disk is mounted as /lscratch and is accessible to
-user at /lscratch/$PBS_JOBID directory.
-
-The local scratch filesystem is intended  for temporary scratch data
-generated during the calculation as well as for high performance access
-to input and output files. All I/O intensive jobs that access large
-number of small files within the calculation must use the local scratch
-filesystem as their working directory. This is required for performance
-reasons, as frequent access to number of small files may overload the
-metadata servers (MDS) of the Lustre filesystem.
-
-The local scratch directory /lscratch/$PBS_JOBID will be deleted
-immediately after the calculation end. Users should take care to save
-the output data from within the jobscript.
-
-local SCRATCH filesystem
-Mountpoint
-/lscratch
-Accesspoint
-/lscratch/$PBS_JOBID
-Capacity
-330GB
-Throughput
-100MB/s
-User quota
-none
-### RAM disk
-
-Every computational node is equipped with filesystem realized in memory,
-so called RAM disk.
-
-Use RAM disk in case you need really fast access to your data of limited
-size during your calculation.
-Be very careful, use of RAM disk filesystem is at the expense of
-operational memory.
-
-[]()The local RAM disk is mounted as /ramdisk and is accessible to user
-at /ramdisk/$PBS_JOBID directory.
-
-The local RAM disk filesystem is intended for temporary scratch data
-generated during the calculation as well as for high performance access
-to input and output files. Size of RAM disk filesystem is limited. Be
-very careful, use of RAM disk filesystem is at the expense of
-operational memory.  It is not recommended to allocate large amount of
-memory and use large amount of data in RAM disk filesystem at the same
-time.
-
-The local RAM disk directory /ramdisk/$PBS_JOBID will be deleted
-immediately after the calculation end. Users should take care to save
-the output data from within the jobscript.
-
-RAM disk
-Mountpoint
-<span class="monospace">/ramdisk</span>
-Accesspoint
-<span class="monospace">/ramdisk/$PBS_JOBID</span>
-Capacity
-60GB at compute nodes without accelerator
-
-90GB at compute nodes with accelerator
-
-500GB at fat nodes
-
-Throughput
-over 1.5 GB/s write, over 5 GB/s read, single thread
-over 10 GB/s write, over 50 GB/s read, 16 threads
-
-User quota
-none
-### tmp
-
-Each node is equipped with local /tmp directory of few GB capacity. The
-/tmp directory should be used to work with small temporary files. Old
-files in /tmp directory are automatically purged.
-
-
-**Summary
-**
-----------
-
-
-  Mountpoint                                 Usage                       Protocol   Net Capacity     Throughput   Limitations   Access                    Services
-  ------------------------------------------ --------------------------- ---------- ---------------- ------------ ------------- ------------------------- -----------------------------
-  <span class="monospace">/home</span>       home directory              Lustre     320 TiB          2 GB/s       Quota 250GB   Compute and login nodes   backed up
-  <span class="monospace">/scratch</span>    cluster shared jobs' data   Lustre     146 TiB          6 GB/s       Quota 100TB   Compute and login nodes   files older 90 days removed
-  <span class="monospace">/lscratch</span>   node local jobs' data       local      330 GB           100 MB/s     none          Compute nodes             purged after job ends
-  <span class="monospace">/ramdisk</span>    node local jobs' data       local      60, 90, 500 GB   5-50 GB/s    none          Compute nodes             purged after job ends
-  <span class="monospace">/tmp</span>        local temporary files       local                       100 MB/s     none          Compute and login nodes   auto purged
-
- 
diff --git a/docs.it4i.cz/anselm.md b/docs.it4i.cz/anselm.md
deleted file mode 100644
index 7d0f0258c0eec28b115e6619971e701ea4997fac..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/anselm.md
+++ /dev/null
@@ -1,42 +0,0 @@
-Introduction 
-============
-
-
-
-  
-
-Welcome to Anselm supercomputer cluster. The Anselm cluster consists of
-209 compute nodes, totaling 3344 compute cores with 15TB RAM and giving
-over 94 Tflop/s theoretical peak performance. Each node is a <span
-class="WYSIWYG_LINK">powerful</span> x86-64 computer, equipped with 16
-cores, at least 64GB RAM, and 500GB harddrive. Nodes are interconnected
-by fully non-blocking fat-tree Infiniband network and equipped with
-Intel Sandy Bridge processors. A few nodes are also equipped with NVIDIA
-Kepler GPU or Intel Xeon Phi MIC accelerators. Read more in [Hardware
-Overview](anselm-cluster-documentation/hardware-overview.html).
-
-The cluster runs bullx Linux [<span
-class="WYSIWYG_LINK"></span>](http://www.bull.com/bullx-logiciels/systeme-exploitation.html)[operating
-system](anselm-cluster-documentation/software/operating-system.html),
-which is compatible with the <span class="WYSIWYG_LINK">RedHat</span>
-[<span class="WYSIWYG_LINK">Linux
-family.</span>](http://upload.wikimedia.org/wikipedia/commons/1/1b/Linux_Distribution_Timeline.svg)
-We have installed a wide range of
-[software](anselm-cluster-documentation/software.1.html)
-packages targeted at different scientific domains. These packages are
-accessible via the [modules
-environment](anselm-cluster-documentation/environment-and-modules.html).
-
-User data shared file-system (HOME, 320TB) and job data shared
-file-system (SCRATCH, 146TB) are available to users.
-
-The PBS Professional workload manager provides [computing resources
-allocations and job
-execution](anselm-cluster-documentation/resource-allocation-and-job-execution.html).
-
-Read more on how to [apply for
-resources](get-started-with-it4innovations/applying-for-resources.html),
-[obtain login
-credentials,](get-started-with-it4innovations/obtaining-login-credentials.html)
-and [access the
-cluster](anselm-cluster-documentation/accessing-the-cluster.html).
diff --git a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface.md b/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface.md
deleted file mode 100644
index fea06f9880682f0bfff7d4a6ae760f77744f2d03..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface.md
+++ /dev/null
@@ -1,30 +0,0 @@
-Graphical User Interface 
-========================
-
-
-
-  
-
-X Window System
----------------
-
-The X Window system is a principal way to get GUI access to the
-clusters.
-
-Read more about configuring [**X Window
-System**](graphical-user-interface/x-window-system/x-window-and-vnc.html).
-
-VNC
----
-
-The **Virtual Network Computing** (**VNC**) is a graphical <span
-class="link-external">[desktop
-sharing](http://en.wikipedia.org/wiki/Desktop_sharing "Desktop sharing")</span>
-system that uses the <span class="link-external">[Remote Frame Buffer
-protocol
-(RFB)](http://en.wikipedia.org/wiki/RFB_protocol "RFB protocol")</span>
-to remotely control another <span
-class="link-external">[computer](http://en.wikipedia.org/wiki/Computer "Computer")</span>.
-
-Read more about configuring
-**[VNC](../../salomon/accessing-the-cluster/graphical-user-interface/vnc.html)**.
diff --git a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/cygwin-and-x11-forwarding.md b/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/cygwin-and-x11-forwarding.md
deleted file mode 100644
index f99e4d95ad01b66cf02cb37ffea5798d72fcc118..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/cygwin-and-x11-forwarding.md
+++ /dev/null
@@ -1,45 +0,0 @@
-Cygwin and X11 forwarding 
-=========================
-
-### If <span style="text-align: left; float: none; ">no able to forward X11 using PuTTY to CygwinX</span>
-
-``` 
-[usename@login1.anselm ~]$ gnome-session &
-[1] 23691
-[usename@login1.anselm ~]$ PuTTY X11 proxy: unable to connect to forwarded X server: Network error: Connection refused
-PuTTY X11 proxy: unable to connect to forwarded X server: Network error: Connection refused
-
-** (gnome-session:23691): WARNING **: Cannot open display:
-```
-
-<span style="text-align: left; float: none; "> </span>
-
-1.  <span style="text-align: left; float: none; ">Locate and modify
-    <span style="text-align: left; float: none; ">Cygwin shortcut that
-    uses<span
-    class="Apple-converted-space"> </span></span>[startxwin](http://x.cygwin.com/docs/man1/startxwin.1.html)
-    locate
-    C:cygwin64binXWin.exe
-    <span style="text-align: left; float: none; "><span
-    style="text-align: left; float: none; "><span
-    style="text-align: left; float: none; ">change it
-    to</span></span></span>
-    C:*cygwin64binXWin.exe -listen tcp*
-    
-    ![XWin-listen-tcp.png](cygwin-and-x11-forwarding/XWinlistentcp.png "XWin-listen-tcp.png")
-    </span>
-    <span style="text-align: left; float: none; "><span
-    style="text-align: left; float: none; "></span></span>
-2.  <span style="text-align: left; float: none; "><span
-    style="text-align: left; float: none; ">Check Putty settings:
-    <span style="text-align: left; float: none; ">Enable X11
-    forwarding</span><span style="text-align: left; float: none; "><span
-    style="text-align: left; float: none; "></span><span
-    class="Apple-converted-space">
-    </span></span>
-    [![](cygwin-and-x11-forwarding/cygwinX11forwarding.png/@@images/0f5b58e3-253c-4f87-a3b2-16f75cbf090f.png)](cygwin-and-x11-forwarding/cygwin-and-x11-forwarding.html)
-    </span></span>
-
- 
-
-
diff --git a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc.md b/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc.md
deleted file mode 100644
index 38b843be16240e596b746a2c4891dc966306c16b..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc.md
+++ /dev/null
@@ -1,202 +0,0 @@
-X Window System 
-===============
-
-
-
-  
-
-The X Window system is a principal way to get GUI access to the
-clusters. The **X Window System** (commonly known as **X11**, based on
-its current major version being 11, or shortened to simply **X**, and
-sometimes informally **X-Windows**) is a computer software system and
-network
-[protocol](http://en.wikipedia.org/wiki/Protocol_%28computing%29 "Protocol (computing)")
-that provides a basis for [graphical user
-interfaces](http://en.wikipedia.org/wiki/Graphical_user_interface "Graphical user interface")
-(GUIs) and rich input device capability for [networked
-computers](http://en.wikipedia.org/wiki/Computer_network "Computer network").
-
-The X display forwarding must be activated and the X server running on
-client side
-
-### X display
-
-In order to display graphical user interface GUI of various software
-tools, you need to enable the X display forwarding. On Linux and Mac,
-log in using the -X option tho ssh client:
-
-``` 
- local $ ssh -X username@cluster-name.it4i.cz
-```
-
-### X Display Forwarding on Windows
-
-On Windows use the PuTTY client to enable X11 forwarding.   In PuTTY
-menu, go to Connection-&gt;SSH-&gt;X11, mark the Enable X11 forwarding
-checkbox before logging in. Then log in as usual.
-
-To verify the forwarding, type
-
-``` 
-$ echo $DISPLAY
-```
-
-if you receive something like
-
-``` 
-localhost:10.0
-```
-
-then the X11 forwarding is enabled.
-
-### X Server
-
-In order to display graphical user interface GUI of various software
-tools, you need running X server on your desktop computer. For Linux
-users, no action is required as the X server is the default GUI
-environment on most Linux distributions. Mac and Windows users need to
-install and run the X server on their workstations.
-
-### X Server on OS X
-
-Mac OS users need to install [XQuartz
-server](http://xquartz.macosforge.org/landing/).
-
-### X Server on Windows
-
-There are variety of X servers available for Windows environment. The
-commercial Xwin32 is very stable and rich featured. The Cygwin
-environment provides fully featured open-source XWin X server. For
-simplicity, we recommend open-source X server by the [Xming
-project](http://sourceforge.net/projects/xming/). For
-stability and full features we recommend the
-[XWin](http://x.cygwin.com/) X server by Cygwin
-
-<table>
-<colgroup>
-<col width="50%" />
-<col width="50%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">How to use Xwin</th>
-<th align="left">How to use Xming</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><p><a href="http://x.cygwin.com/" class="external-link">Install Cygwin</a></p>
-<p>Find and execute XWin.exe<br />
-to start the X server on Windows desktop computer.</p>
-<p><a href="cygwin-and-x11-forwarding.html" class="internal-link">If no able to forward X11 using PuTTY to CygwinX</a></p></td>
-<td align="left"><p>Use Xlaunch to configure the Xming.</p>
-<p>Run Xming<br />
-to start the X server on Windows desktop computer.</p></td>
-</tr>
-</tbody>
-</table>
-
-Read more on
-[http://www.math.umn.edu/systems_guide/putty_xwin32.html](http://www.math.umn.edu/systems_guide/putty_xwin32.shtml)
-
-### Running GUI Enabled Applications
-
-Make sure that X forwarding is activated and the X server is running.
-
-Then launch the application as usual. Use the & to run the application
-in background.
-
-``` 
-$ module load intel (idb and gvim not installed yet)
-$ gvim &
-```
-
-``` 
-$ xterm
-```
-
-In this example, we activate the intel programing environment tools,
-then start the graphical gvim editor.
-
-### []()GUI Applications on Compute Nodes
-
-Allocate the compute nodes using -X option on the qsub command
-
-``` 
-$ qsub -q qexp -l select=2:ncpus=24 -X -I
-```
-
-In this example, we allocate 2 nodes via qexp queue, interactively. We
-request X11 forwarding with the -X option. It will be possible to run
-the GUI enabled applications directly on the first compute node.
-
-**Better performance** is obtained by logging on the allocated compute
-node via ssh, using the -X option.
-
-``` 
-$ ssh -X r24u35n680
-```
-
-In this example, we log in on the r24u35n680 compute node, with the X11
-forwarding enabled.
-
-HTML commented section #1 (no GUI on Compute nodes - Xvfb)
-
-### The Gnome GUI Environment
-
-The Gnome 2.28 GUI environment is available on the clusters. We
-recommend to use separate X server window for displaying the Gnome
-environment.
-
-### Gnome on Linux and OS X
-
-To run the remote Gnome session in a window on Linux/OS X computer, you
-need to install Xephyr. Ubuntu package is <span
-class="monospace">xserver-xephyr</span>, on OS X it is part of
-[XQuartz](http://xquartz.macosforge.org/landing/).
-First, launch Xephyr on local machine:
-
-``` 
-local $ Xephyr -ac -screen 1024x768 -br -reset -terminate :1 &
-```
-
-This will open a new X window with size 1024x768 at DISPLAY :1. Next,
-ssh to the cluster with DISPLAY environment variable set and launch
-<span class="monospace">gnome-session</span>
-
-    local $ DISPLAY=:1.0 ssh -XC yourname@cluster-name.it4i.cz -i ~/.ssh/path_to_your_key
-    ... cluster-name MOTD...
-    yourname@login1.cluster-namen.it4i.cz $ gnome-session &
-
-On older systems where Xephyr is not available, you may also try Xnest
-instead of Xephyr. Another option is to launch a new X server in a
-separate console, via:
-
-``` 
-xinit /usr/bin/ssh -XT -i .ssh/path_to_your_key yourname@cluster-namen.it4i.cz gnome-session -- :1 vt12
-```
-
-However this method does not seem to work with recent Linux
-distributions and you will need to manually source <span
-class="monospace">/etc/profile</span> to properly set environment
-variables for PBS.
-
-### Gnome on Windows**
-**
-
-Use Xlaunch to start the Xming server or run the XWin.exe. Select the
-''One window" mode.
-
-Log in to the cluster, using PuTTY. On the cluster, run the
-gnome-session command.
-
-``` 
-$ gnome-session &
-```
-
-In this way, we run remote gnome session on the cluster, displaying it
-in the local X server
-
-Use System-&gt;Log Out to close the gnome-session
-
-
diff --git a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty.1.md b/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty.1.md
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--- a/docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty.1.md
+++ /dev/null
@@ -1,95 +0,0 @@
-PuTTY 
-=====
-
-
-
-  
-
-PuTTY -<span class="Apple-converted-space"> </span>before we start SSH connection ssh-connection style="text-align: start; "}
----------------------------------------------------------------------------------
-
-### Windows PuTTY Installer
-
-We recommned you to download "**A Windows installer for everything
-except PuTTYtel**" with ***Pageant*** (SSH authentication agent) and
-**PuTTYgen** (PuTTY key generator) which is available
-[here](http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html).
-
-<span class="internal-link">After installation you can proceed directly
-to private keys authentication using
-["Putty"](putty/putty.html#putty).</span>
-"Change Password for Existing Private Key" is optional.
-"Generate a New Public/Private key pair" is intended for users without
-Public/Private key in the initial email containing login credentials.
-"Pageant" is optional.
-
-### PuTTYgen
-
-PuTTYgen is the PuTTY key generator. Read more how to load in an
-existing private key and change your passphrase or generate a new
-public/private key pair using
-[PuTTYgen](putty/puttygen.html) if needed.
-
-### Pageant SSH agent
-
-[Pageant](putty/pageant.html) holds your private key in
-memory without needing to retype a passphrase on every login. We
-recommend its usage.
-
-[]()PuTTY - how to connect to the IT4Innovations cluster
---------------------------------------------------------
-
--   Run PuTTY
--   Enter Host name and Save session fields with [Login
-    address](../../../salomon/accessing-the-cluster/shell-and-data-access/shell-and-data-access.html)
-    and browse Connection - &gt; SSH -&gt; Auth menu.
-    The *Host Name* input may be in the format
-    **"username@clustername.it4i.cz"** so you don't have to type your
-    login each time.
-    In this example we will connect to the Salomon cluster using
-     **"salomon.it4i.cz"**.
-    
-    [![](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/PuTTY_host_Salomon.png/@@images/c24acdc5-21eb-47aa-b412-75849ccd2e82.png)](putty/PuTTY_host_Salomon.png)
-
- 
-
--   Category -&gt; Connection - &gt; SSH -&gt; Auth:
-    Select Attempt authentication using Pageant.
-    Select Allow agent forwarding.
-    Browse and select your [private key](ssh-keys.html)
-    file.
-    
-    [![PuttyKey](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/PuTTY_keyV.png/@@images/9f161548-31a6-42a7-ad61-4e885e4b4664.png "PuttyKey")](putty/PuTTY_keyV.png)
-    
--   Return to Session page and Save selected configuration with *Save*
-    button.
-    
-    [![](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/PuTTY_save_Salomon.png/@@images/0eeeb971-b295-4780-88e7-7557da05a1cb.png)](putty/PuTTY_save_Salomon.png)
-    
--   Now you can log in using *Open* button.
-    
-    [![](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/PuTTY_open_Salomon.png/@@images/741d3e56-d9b3-48fd-838f-90ad6c1bf8eb.png)](putty/PuTTY_open_Salomon.png)
-    
--   Enter your username if the *Host Name* input is not in the format
-    "username@salomon.it4i.cz".
-    
--   Enter passphrase for selected [private
-    key](ssh-keys.html) file if Pageant ****SSH
-    authentication agent is not used.
-    
-
-Another PuTTY Settings
-----------------------
-
--   Category -&gt; Windows -&gt; Translation -&gt; Remote character set
-    and select **UTF-8**.
-
-<!-- -->
-
--   Category -&gt; Terminal -&gt; Features and select **Disable
-    application keypad mode** (enable numpad)
--   Save your configuration on Session page in to Default Settings with
-    *Save* button .
-
-
-
diff --git a/docs.it4i.cz/links.md b/docs.it4i.cz/links.md
deleted file mode 100644
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+++ /dev/null
@@ -1,24 +0,0 @@
-Links 
-=====
-
-
-
-  
-
--   <span
-    class="WYSIWYG_LINK">[IT4Innovations](http://www.it4i.cz/?lang=en)</span>
--   <span class="WYSIWYG_LINK">[VSB-Technical university of
-    Ostrava](http://www.vsb.cz)
-    </span>
--   <span
-    class="WYSIWYG_LINK">[PRACE](http://www.prace-ri.eu)</span>
--   <span
-    class="WYSIWYG_LINK">[CESNET](http://www.cesnet.cz)
-    </span>
--   [<span class="WYSIWYG_LINK">Introduction to
-    Linux</span>](http://www.tldp.org/LDP/intro-linux/html/)
-    [<span
-    class="WYSIWYG_LINK">(TLDP</span>](http://www.tldp.org/LDP/intro-linux/html/))
-
-<span class="WYSIWYG_LINK">
-</span>
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diff --git a/docs.it4i.cz/salomon.md b/docs.it4i.cz/salomon.md
deleted file mode 100644
index ae1632b2315e6ff9233e86e639573280a19105b9..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon.md
+++ /dev/null
@@ -1,35 +0,0 @@
-Introduction 
-============
-
-Welcome to Salomon supercomputer cluster. The Salomon cluster consists
-of 1008 compute nodes, totaling 24192 compute cores with 129TB RAM and
-giving over 2 Pflop/s theoretical peak performance. Each node is a <span
-class="WYSIWYG_LINK">powerful</span> x86-64 computer, equipped with 24
-cores, at least 128GB RAM. Nodes are interconnected by 7D Enhanced
-hypercube Infiniband network and equipped with Intel Xeon E5-2680v3
-processors. The Salomon cluster consists of 576 nodes without
-accelerators and 432 nodes equipped with Intel Xeon Phi MIC
-accelerators. Read more in [Hardware
-Overview](salomon/hardware-overview-1/hardware-overview.html).
-
-The cluster runs CentOS Linux [<span
-class="WYSIWYG_LINK"></span>](http://www.bull.com/bullx-logiciels/systeme-exploitation.html)<span
-class="internal-link">operating system</span>, which is compatible with
-the <span class="WYSIWYG_LINK">RedHat</span> [<span
-class="WYSIWYG_LINK">Linux
-family.</span>](http://upload.wikimedia.org/wikipedia/commons/1/1b/Linux_Distribution_Timeline.svg)
-
-**Water-cooled Compute Nodes With MIC Accelerator**
-
-[![Salomon](https://docs.it4i.cz/salomon/salomon/@@images/8fe6c2ad-25f3-48cf-abbb-6f8ba653b93e.jpeg "Salomon")](salomon/salomon)
-
-![Salomon](salomon/salomon-1/@@images/ba2c321e-1554-4826-b6ec-3c68d370cd9f.jpeg "Salomon")
-
-**Tape Library T950B**
-
-![Salomon](salomon/salomon-3/@@images/d2a6de55-62fc-454f-adda-a6a25e3f44dd.jpeg "Salomon")
-
-![Salomon](salomon/salomon-4/@@images/82997462-cd88-49eb-aad5-71d77903d903.jpeg "Salomon")
-
-
-
diff --git a/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface.md b/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface.md
deleted file mode 100644
index e5dc5cd4f3c89e497f7cbcae822989600ed8d696..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface.md
+++ /dev/null
@@ -1,34 +0,0 @@
-Graphical User Interface 
-========================
-
-
-
-  
-
-X Window System
----------------
-
-The X Window system is a principal way to get GUI access to the
-clusters.
-
-Read more about configuring [**X Window
-System**](../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc.html).
-
-VNC
----
-
-The **Virtual Network Computing** (**VNC**) is a graphical <span
-class="link-external">[desktop
-sharing](http://en.wikipedia.org/wiki/Desktop_sharing "Desktop sharing")</span>
-system that uses the <span class="link-external">[Remote Frame Buffer
-protocol
-(RFB)](http://en.wikipedia.org/wiki/RFB_protocol "RFB protocol")</span>
-to remotely control another <span
-class="link-external">[computer](http://en.wikipedia.org/wiki/Computer "Computer")</span>.
-
-Read more about configuring
-**[VNC](graphical-user-interface/vnc.html)**.
-
-
-
-
diff --git a/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc.md b/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc.md
deleted file mode 100644
index 2bcd60f9a918753fa1ae72b81fb55d10a0dfce66..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc.md
+++ /dev/null
@@ -1,282 +0,0 @@
-VNC 
-===
-
-
-
-  
-
-The **Virtual Network Computing** (**VNC**) is a graphical [desktop
-sharing](http://en.wikipedia.org/wiki/Desktop_sharing "Desktop sharing")
-system that uses the [Remote Frame Buffer protocol
-(RFB)](http://en.wikipedia.org/wiki/RFB_protocol "RFB protocol") to
-remotely control another
-[computer](http://en.wikipedia.org/wiki/Computer "Computer"). It
-transmits the
-[keyboard](http://en.wikipedia.org/wiki/Computer_keyboard "Computer keyboard")
-and
-[mouse](http://en.wikipedia.org/wiki/Computer_mouse "Computer mouse")
-events from one computer to another, relaying the graphical
-[screen](http://en.wikipedia.org/wiki/Computer_screen "Computer screen")
-updates back in the other direction, over a
-[network](http://en.wikipedia.org/wiki/Computer_network "Computer network").^[<span>[</span>1<span>]</span>](http://en.wikipedia.org/wiki/Virtual_Network_Computing#cite_note-1)^
-
-The recommended clients are
-[TightVNC](http://www.tightvnc.com) or
-[TigerVNC](http://sourceforge.net/apps/mediawiki/tigervnc/index.php?title=Main_Page)
-(free, open source, available for almost any platform).
-
-Create VNC password
--------------------
-
-Local VNC password should be set before the first login. Do use a strong
-password.
-
-``` 
-[username@login2 ~]$ vncpasswd
-Password:
-Verify:
-```
-
-Start vncserver
----------------
-
-To access VNC a local vncserver must be  started first and also a tunnel
-using SSH port forwarding must be established.
-[See
-below](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/vnc.html#linux-example-of-creating-a-tunnel)
-for the details on SSH tunnels. In this example we use port 61.
-
-You can find ports which are already occupied. Here you can see that
-ports "<span class="pln">/usr/bin/Xvnc :79"</span> and "<span
-class="pln">/usr/bin/Xvnc :60" are occupied.</span>
-
-``` 
-[username@login2 ~]$ ps aux | grep Xvnc
-username    5971  0.0  0.0 201072 92564 ?        SN   Sep22   4:19 /usr/bin/Xvnc :79 -desktop login2:79 (username) -auth /home/gre196/.Xauthority -geometry 1024x768 -rfbwait 30000 -rfbauth /home/username/.vnc/passwd -rfbport 5979 -fp catalogue:/etc/X11/fontpath.d -pn
-username    10296  0.0  0.0 131772 21076 pts/29   SN   13:01   0:01 /usr/bin/Xvnc :60 -desktop login2:61 (username) -auth /home/username/.Xauthority -geometry 1600x900 -depth 16 -rfbwait 30000 -rfbauth /home/jir13/.vnc/passwd -rfbport 5960 -fp catalogue:/etc/X11/fontpath.d -pn
-.....
-```
-
-Choose free port e.g. 61 and start your VNC server:
-
-``` 
-[username@login2 ~]$ vncserver :61 -geometry 1600x900 -depth 16
-
-New 'login2:1 (username)' desktop is login2:1
-
-Starting applications specified in /home/username/.vnc/xstartup
-Log file is /home/username/.vnc/login2:1.log
-```
-
-Check if VNC server is started on the port (in this example 61):
-
-``` 
-[username@login2 .vnc]$ vncserver -list
-
-TigerVNC server sessions:
-
-X DISPLAY #     PROCESS ID
-:61              18437
-```
-
-Another command:<span class="pln"></span>
-
-``` 
-[username@login2 .vnc]$  ps aux | grep Xvnc
-
-username    10296  0.0  0.0 131772 21076 pts/29   SN   13:01   0:01 /usr/bin/Xvnc :61 -desktop login2:61 (username) -auth /home/jir13/.Xauthority -geometry 1600x900 -depth 16 -rfbwait 30000 -rfbauth /home/username/.vnc/passwd -rfbport 5961 -fp catalogue:/etc/X11/fontpath.d -pn
-```
-
-To access the VNC server you have to create a tunnel between the login
-node using TCP **port 5961** and your machine using a free TCP port (for
-simplicity the very same, in this case).
-
-The tunnel must point to the same login node where you launched the VNC
-server, eg. login2. If you use just cluster-name.it4i.cz, the tunnel
-might point to a different node due to DNS round robin.
-
-### []()[]()Linux/Mac OS example of creating a tunnel
-
-At your machine, create the tunnel:
-
-``` 
-local $  ssh -TN -f username@login2.cluster-name.it4i.cz -L 5961:localhost:5961
-```
-
-Issue the following command to check the tunnel is established (please
-note the PID 2022 in the last column, you'll need it for closing the
-tunnel):
-
-``` 
-local $ netstat -natp | grep 5961
-(Not all processes could be identified, non-owned process info
- will not be shown, you would have to be root to see it all.)
-tcp        0      0 127.0.0.1:5961          0.0.0.0:*               LISTEN      2022/ssh        
-tcp6       0      0 ::1:5961                :::*                    LISTEN      2022/ssh 
-```
-
-Or on Mac OS use this command:
-
-``` 
-local-mac $ lsof -n -i4TCP:5961 | grep LISTEN
-ssh 75890 sta545 7u IPv4 0xfb062b5c15a56a3b 0t0 TCP 127.0.0.1:5961 (LISTEN)
-```
-
-Connect with the VNC client:
-
-``` 
-local $ vncviewer 127.0.0.1:5961
-```
-
-In this example, we connect to VNC server on port 5961, via the ssh
-tunnel. The connection is encrypted and secured. The VNC server
-listening on port 5961 provides screen of 1600x900 pixels.
-
-You have to destroy the SSH tunnel which is still running at the
-background after you finish the work. Use the following command (PID
-2022 in this case, see the netstat command above):
-
-``` 
-kill 2022
-```
-
-### Windows example of creating a tunnel
-
-Use PuTTY to log in on cluster.
-
-Start vncserver using command vncserver described above.
-
-Search for the localhost and port number (in this case
-127.0.0.1:5961).**
-**
-
-``` 
-[username@login2 .vnc]$ netstat -tanp | grep Xvnc
-(Not all processes could be identified, non-owned process info
- will not be shown, you would have to be root to see it all.)
-tcp        0      0 127.0.0.1:5961              0.0.0.0:*                   LISTEN      24031/Xvnc
-```
-
-On the PuTTY Configuration screen go to Connection-&gt;SSH-&gt;Tunnels
-to set up the tunnel.
-
-Fill the Source port and Destination fields. **Do not forget to click
-the Add button**.
-
-[![PuTTY - Create
-tunnel](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/putty-tunnel.png/@@images/4c66cd51-c858-473b-98c2-8d901aea7118.png "PuTTY Tunnel")](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/putty-tunnel.png)
-
-Run the VNC client of your choice, select VNC server 127.0.0.1, port
-5961 and connect using VNC password.
-
-### Example of starting TigerVNC viewer
-
-![TigerVNC
-vncviewer](../../../anselm-cluster-documentation/vncviewer.png/@@images/bb4cedff-4cb6-402b-ac79-039186fe5df3.png "Vncviewer")
-
-In this example, we connect to VNC server on port 5961, via the ssh
-tunnel, using TigerVNC viewer. The connection is encrypted and secured.
-The VNC server listening on port 5961 provides screen of 1600x900
-pixels.
-
-### Example of starting TightVNC Viewer
-
-Use your VNC password to log using TightVNC Viewer and start a Gnome
-Session on the login node.
-
-[**![](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/TightVNC_login.png/@@images/e53354d8-a2e8-4947-92b3-dd107d498408.png)**](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/TightVNC_login.png)
-
-Gnome session
--------------
-
-You should see after the successful login.
-
-[![Default Gnome
-session](../../gnome_screen.jpg/@@images/7758b792-24eb-48dc-bf72-618cda100fda.png "Default Gnome session")](https://docs.it4i.cz/get-started-with-it4innovations/gnome_screen.jpg)
-
-### **Disable your Gnome session screensaver
-**
-
-Open Screensaver preferences dialog:
-
-[![Screensaver
-Preferences](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmscreensaver.png/@@images/8e80a92f-f691-4d92-8e62-344128dcc00b.png "Screensaver Preferences")](../../gnome_screen.jpg.1)
-
-Uncheck both options below the slider:
-
-[![Disable lock screen and
-screensaver](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmdisablescreensaver.png/@@images/8a4758d9-3027-4ce4-9a90-2d5e88197451.png "Disable lock screen and screensaver")](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gdmdisablescreensaver.png)
-
-### Kill screensaver if locked screen
-
-If the screen gets locked you have to kill the screensaver. Do not to
-forget to disable the screensaver then.
-
-``` 
-[username@login2 .vnc]$ ps aux | grep screen
-username     1503  0.0  0.0 103244   892 pts/4    S+   14:37   0:00 grep screen
-username     24316  0.0  0.0 270564  3528 ?        Ss   14:12   0:00 gnome-screensaver
-
-[username@login2 .vnc]$ kill 24316
-```
-
-### Kill vncserver after finished work
-
-You should kill your VNC server using command:
-
-``` 
-[username@login2 .vnc]$  vncserver  -kill :61
-Killing Xvnc process ID 7074
-Xvnc process ID 7074 already killed
-```
-
-Or this way:
-
-``` 
-[username@login2 .vnc]$  pkill vnc
-```
-
-GUI applications on compute nodes over VNC
-------------------------------------------
-
-The very [same methods as described
-above](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-and-vnc#gui-applications-on-compute-nodes),
-may be used to run the GUI applications on compute nodes. However, for
-**maximum performance**, proceed following these steps:
-
-Open a Terminal (Applications -&gt; System Tools -&gt; Terminal). Run
-all the next commands in the terminal.
-
-[![gnome-terminal.png](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gnome-terminal.png/@@images/b44f5d8c-156d-4041-9bb0-973996413834.png "gnome-terminal.png")](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gnome-terminal.png)
-
-Allow incoming X11 graphics from the compute nodes at the login node:
-
-``` 
-$ xhost +
-```
-
-Get an interactive session on a compute node (for more detailed info
-[look
-here](../../../anselm-cluster-documentation/resource-allocation-and-job-execution/job-submission-and-execution.html)).
-Use the **-v DISPLAY** option to propagate the DISPLAY on the compute
-node. In this example, we want a complete node (24 cores in this
-example) from the production queue:
-
-``` 
-$ qsub -I -v DISPLAY=$(uname -n):$(echo $DISPLAY | cut -d ':' -f 2) -A PROJECT_ID -q qprod -l select=1:ncpus=24
-```
-
-Test that the DISPLAY redirection into your VNC session works, by
-running a X11 application (e. g. XTerm) on the assigned compute node:
-
-``` 
-$ xterm
-```
-
-Example described above:
-
-[![gnome-compute-nodes-over-vnc.png](https://docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gnome-compute-nodes-over-vnc.png/@@images/90ca3609-a3ff-4867-9019-954c74224961.png "gnome-compute-nodes-over-vnc.png")](../../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/vnc/gnome-compute-nodes-over-vnc.png)
-
-
-
-
diff --git a/docs.it4i.cz/salomon/accessing-the-cluster/shell-and-data-access/shell-and-data-access.md b/docs.it4i.cz/salomon/accessing-the-cluster/shell-and-data-access/shell-and-data-access.md
deleted file mode 100644
index 7907e59156e10fc926d335fef30f6bb7606df5e0..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/accessing-the-cluster/shell-and-data-access/shell-and-data-access.md
+++ /dev/null
@@ -1,149 +0,0 @@
-Shell access and data transfer 
-==============================
-
-
-
-  
-
-Interactive Login
------------------
-
-The Salomon cluster is accessed by SSH protocol via login nodes login1,
-login2, login3 and login4 at address salomon.it4i.cz. The login nodes
-may be addressed specifically, by prepending the login node name to the
-address.
-
-The alias <span>salomon.it4i.cz is currently not available through VPN
-connection. Please use loginX.salomon.it4i.cz when connected to
-VPN.</span>
-
-  Login address            Port   Protocol   Login node
-  ------------------------ ------ ---------- -----------------------------------------
-  salomon.it4i.cz          22     ssh        round-robin DNS record for login[1-4]
-  login1.salomon.it4i.cz   22     ssh        login1
-  login2.salomon.it4i.cz   22     ssh        login2
-  login3.salomon.it4i.cz   22     ssh        login3
-  login4.salomon.it4i.cz   22     ssh        login4
-
-The authentication is by the [private
-key](../../../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.html)
-
-Please verify SSH fingerprints during the first logon. They are
-identical on all login nodes:<span class="monospace">
-f6:28:98:e4:f9:b2:a6:8f:f2:f4:2d:0a:09:67:69:80 (DSA)
-70:01:c9:9a:5d:88:91:c7:1b:c0:84:d1:fa:4e:83:5c (RSA)</span>
-
- 
-
-Private keys authentication:
-
-On **Linux** or **Mac**, use
-
-``` 
-local $ ssh -i /path/to/id_rsa username@salomon.it4i.cz
-```
-
-If you see warning message "UNPROTECTED PRIVATE KEY FILE!", use this
-command to set lower permissions to private key file.
-
-``` 
-local $ chmod 600 /path/to/id_rsa
-```
-
-On **Windows**, use [PuTTY ssh
-client](../../../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty/putty.html).
-
-After logging in, you will see the command prompt:
-
-                        _____       _                             
-                       / ____|     | |                            
-                      | (___   __ _| | ___  _ __ ___   ___  _ __  
-                       ___  / _` | |/ _ | '_ ` _  / _ | '_  
-                       ____) | (_| | | (_) | | | | | | (_) | | | |
-                      |_____/ __,_|_|___/|_| |_| |_|___/|_| |_|
-                                                                  
-
-                            http://www.it4i.cz/?lang=en
-
-
-    Last login: Tue Jul  9 15:57:38 2013 from your-host.example.com
-    [username@login2.salomon ~]$
-
-The environment is **not** shared between login nodes, except for
-[shared filesystems](../../storage/storage.html).
-
-Data Transfer
--------------
-
-Data in and out of the system may be transferred by the
-[scp](http://en.wikipedia.org/wiki/Secure_copy) and sftp
-protocols.
-
-In case large volumes of data are transferred, use dedicated data mover
-nodes cedge[1-3].salomon.it4i.cz for increased performance.
-
- 
-
-HTML commented section #1 (removed cedge servers from the table)
-
-  Address                                                Port   Protocol
-  ------------------------------------------------------ ------ -----------------------------------------
-  salomon.it4i.cz                                        22     scp, sftp
-  login1.salomon.it4i.cz                                 22     scp, sftp
-  login2.salomon.it4i.cz                                 22     scp, sftp
-  <span class="discreet"></span>login3.salomon.it4i.cz   22     <span class="discreet"></span>scp, sftp
-  login4.salomon.it4i.cz                                 22     scp, sftp
-
- The authentication is by the [private
-key](../../../get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.html)
-
-HTML commented section #2 (ssh transfer performance data need to be
-verified)
-
-On linux or Mac, use scp or sftp client to transfer the data to Salomon:
-
-``` 
-local $ scp -i /path/to/id_rsa my-local-file username@salomon.it4i.cz:directory/file
-```
-
-``` 
-local $ scp -i /path/to/id_rsa -r my-local-dir username@salomon.it4i.cz:directory
-```
-
-> or
-
-``` 
-local $ sftp -o IdentityFile=/path/to/id_rsa username@salomon.it4i.cz
-```
-
-Very convenient way to transfer files in and out of the Salomon computer
-is via the fuse filesystem
-[sshfs](http://linux.die.net/man/1/sshfs)
-
-``` 
-local $ sshfs -o IdentityFile=/path/to/id_rsa username@salomon.it4i.cz:. mountpoint
-```
-
-Using sshfs, the users Salomon home directory will be mounted on your
-local computer, just like an external disk.
-
-Learn more on ssh, scp and sshfs by reading the manpages
-
-``` 
-$ man ssh
-$ man scp
-$ man sshfs
-```
-
-<span>On Windows</span>, use [WinSCP
-client](http://winscp.net/eng/download.php) to transfer
-the data. The [win-sshfs
-client](http://code.google.com/p/win-sshfs/) provides a
-way to mount the Salomon filesystems directly as an external disc.
-
-More information about the shared file systems is available
-[here](../../storage/storage.html).
-
-
-
-
diff --git a/docs.it4i.cz/salomon/cn_m_cell b/docs.it4i.cz/salomon/cn_m_cell
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diff --git a/docs.it4i.cz/salomon/compute-nodes.md b/docs.it4i.cz/salomon/compute-nodes.md
deleted file mode 100644
index 0e4efa0d0e7b0a295e7536370e5ee9e4bdefc954..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/compute-nodes.md
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@@ -1,260 +0,0 @@
-Compute Nodes 
-=============
-
-
-
-  
-
-Nodes Configuration
--------------------
-
-Salomon is cluster of x86-64 Intel based nodes. The cluster contains two
-types of compute nodes of the same processor type and memory size.
-Compute nodes with MIC accelerator**** contains two Intel Xeon Phi 7120P
-accelerators.
-
-[More about schematic representation of the Salomon cluster compute
-nodes IB
-topology](network-1/ib-single-plane-topology.html).
-
-### **Compute Nodes Without Accelerator**
-
-
--   <span>codename "grafton"</span>
--   <span>576 nodes</span>
--   <div class="itemizedlist">
-
-    13 824 cores in total
-
-    
-
--   <div class="itemizedlist">
-
-    two Intel Xeon E5-2680v3, 12-core, 2.5GHz processors per node
-
-    
-
--   <div class="itemizedlist">
-
-    128 GB of physical memory per node
-
-    
-
-[![cn_m_cell](https://docs.it4i.cz/salomon/cn_m_cell/@@images/8294d5d2-3fec-47d2-a467-10f66d048891.jpeg "cn_m_cell")](cn_m_cell)
-
-### **Compute Nodes With MIC Accelerator**
-
-
--   codename "perrin"
--   <span>432 nodes</span>
-
-
-
--   <div class="itemizedlist">
-
-    <span>10 368 cores in total</span>
-
-    
-
--   <div class="itemizedlist">
-
-    two Intel Xeon E5-2680v3, 12-core, 2.5GHz processors per node
-
-    
-
--   <div class="itemizedlist">
-
-    128 GB of physical memory per node
-
-    
-
--   <div class="itemizedlist">
-
-    MIC accelerator 2x Intel Xeon Phi 7120P per node, 61-cores, 16GB per
-    accelerator
-
-    
-
-
-
-[![cn_mic](https://docs.it4i.cz/salomon/cn_mic-1/@@images/44cb01e0-2d67-4ea1-883c-d06919fbf351.jpeg "cn_mic")](cn_mic-1)
-
-[![(source Silicon Graphics International
-Corp.)](sgi-c1104-gp1/@@images/c1109cbb-9bf4-4f0a-8b0f-a1e464fed0c4.jpeg "SGI-C1104-GP1")](https://www.sgi.com/products/servers/rackable/1u_intel.html#v3 "(source Silicon Graphics International Corp.)")[![cn_mic](https://docs.it4i.cz/salomon/cn_mic/@@images/46081fb2-10d0-43b3-b32f-9650bedf107a.jpeg "cn_mic"){.image-inline
-width="87" height="122"}](cn_mic)
-
-
-### UV 2000
-
-
--   codename "UV2000"
--   <span>1 node</span>
-
-
-
--   <div class="itemizedlist">
-
-    <span>112 cores in total</span>
-
-    
-
--   <div class="itemizedlist">
-
-    14x Intel Xeon E5-4627v2, 8-core, 3.3GHz processors, in 14 NUMA
-    nodes
-
-    
-
--   <div class="itemizedlist">
-
-    3328 GB of physical memory per node
-
-    
-
--   <div class="itemizedlist">
-
-    1x NVIDIA GM200 (GeForce GTX TITAN X), 12GB RAM
-
-    
-
-![UV
-2000](uv-2000/@@images/04ce7514-8d27-4cdb-bf0f-45d875c75df0.jpeg "UV 2000")
-### Compute Nodes Summary********
-
-<table>
-<colgroup>
-<col width="25%" />
-<col width="25%" />
-<col width="25%" />
-<col width="25%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Node type</th>
-<th align="left">Count</th>
-<th align="left">Memory</th>
-<th align="left">Cores</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left">Nodes without accelerator</td>
-<td align="left">576</td>
-<td align="left">128GB</td>
-<td align="left">24 @ 2.5Ghz</td>
-</tr>
-<tr class="even">
-<td align="left">Nodes with MIC accelerator</td>
-<td align="left">432</td>
-<td align="left"><p>128GB</p>
-<p>32GB</p></td>
-<td align="left"><p>24 @ 2.5Ghz</p>
-<p>61 @ <span style="text-align: start; float: none; ">1.238GHz</span></p></td>
-</tr>
-<tr class="odd">
-<td align="left">UV2000 SMP node</td>
-<td align="left">1</td>
-<td align="left"><p>3328GB</p></td>
-<td align="left"><p>112 @ 3.3GHz</p></td>
-</tr>
-</tbody>
-</table>
-
-
-
-Processor Architecture
-----------------------
-
-
-
-Salomon is equipped with Intel Xeon processors Intel Xeon E5-2680v3.
-Processors support Advanced Vector Extensions 2.0 (AVX2) 256-bit
-instruction set.
-
-### Intel Xeon E5-2680v3 Processor
--   12-core
--   speed: 2.5 GHz, up to <span
-    style="text-align: start; float: none; ">3.3</span> GHz using Turbo
-    Boost Technology
--   peak performance: <span class="emphasis">19.2 Gflop/s</span> per
-    core
--   caches:
-    <div class="itemizedlist">
-
-    -   <span style="text-align: start; float: none; ">Intel® Smart
-        Cache</span>: <span style="text-align: start; float: none; ">30
-        MB</span>
-
-    
-
--   memory bandwidth at the level of the processor: <span
-    style="text-align: start; float: none; ">68 GB/s</span>
-
-### MIC Accelerator Intel Xeon Phi 7120P Processor
--   61-core
--   speed: <span style="text-align: start; float: none; ">1.238</span>
-    GHz, up to <span
-    style="text-align: start; float: none; ">1.333</span> GHz using
-    Turbo Boost Technology
--   peak performance: <span class="emphasis">18.4 Gflop/s</span> per
-    core
--   caches:
-    <div class="itemizedlist">
-
-    -   L2: <span style="text-align: start; float: none; ">30.5
-        MB</span>
-
-    
-
--   memory bandwidth at the level of the processor: <span
-    style="text-align: start; float: none; ">352 GB/s</span>
-
-
-
- 
-
-Memory Architecture
--------------------
-
-Memory is equally distributed across all CPUs and cores for optimal
-performance. Memory is composed of memory modules of the same size and
-evenly distributed across all memory controllers and memory channels.
-
-### Compute Node Without Accelerator
--   2 sockets
--   Memory Controllers are integrated into processors.
-    <div class="itemizedlist">
-
-    -   8 DDR4 DIMMS per node
-    -   4 DDR4 DIMMS per CPU
-    -   <span>1 DDR4 DIMMS per channel</span>
-
-    
-
--   Populated memory: 8x 16GB DDR4 DIMM <span>2133MHz</span>
-
-### Compute Node With MIC Accelerator
-2 sockets
-Memory Controllers are integrated into processors.
-
--   8 DDR4 DIMMS per node
--   4 DDR4 DIMMS per CPU
--   <span>1 DDR4 DIMMS per channel</span>
-
-
-
-<span>Populated memory: 8x 16GB DDR4 DIMM 2133MHz</span>
-MIC Accelerator Intel Xeon Phi 7120P Processor
-
--   2 sockets
--   <span><span>Memory Controllers are are connected via an
-    Interprocessor Network (IPN) ring.</span></span>
-    <div class="itemizedlist">
-
-    -   16 GDDR5 DIMMS per node
-    -   8 GDDR5 DIMMS per CPU
-    -   2 GDDR5 DIMMS per channel
-
-    
-
-
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-Hardware Overview 
-=================
-
-
-
-  
-
-Introduction
-------------
-
-The Salomon cluster consists of 1008 computational nodes of which 576
-are regular compute nodes and 432 accelerated nodes. Each node is a
-<span class="WYSIWYG_LINK">powerful</span> x86-64 computer, equipped
-with 24 cores (two twelve-core Intel Xeon processors) and 128GB RAM. The
-nodes are interlinked by high speed InfiniBand and Ethernet networks.
-All nodes share 0.5PB /home NFS disk storage to store the user files.
-Users may use a DDN Lustre shared storage with capacity of 1.69 PB which
-is available for the scratch project data. The user access to the
-Salomon cluster is provided by four login nodes.
-
-[More about schematic representation of the Salomon cluster compute
-nodes IB
-topology](network-1/ib-single-plane-topology.html).<span
-class="internal-link"></span>
-
-[![Salomon](https://docs.it4i.cz/salomon/salomon-2/@@images/25c7db03-5c44-4981-9e19-07c1c23fcf1e.jpeg "Salomon")](salomon-2)
-
-The parameters are summarized in the following tables:
-
-General information
--------------------
-
-**In general**
-Primary purpose
-High Performance Computing
-Architecture of compute nodes
-x86-64
-Operating system
-CentOS 6.7 Linux
-[**Compute nodes**](compute-nodes.html)
-Totally
-1008
-Processor
-2x Intel Xeon E5-2680v3, 2.5GHz, 12cores
-RAM
-128GB, 5.3GB per core, DDR4@2133 MHz
-Local disk drive
-no
-Compute network / Topology
-InfiniBand FDR56 / 7D Enhanced hypercube
-w/o accelerator
-576
-MIC accelerated
-432
-**In total**
-Total theoretical peak performance  (Rpeak)
-2011 Tflop/s
-Total amount of RAM
-<span>129.024 TB</span>
-Compute nodes
--------------
-
-  Node              Count   Processor                          Cores   Memory   Accelerator
-  ----------------- ------- ---------------------------------- ------- -------- --------------------------------------------
-  w/o accelerator   576     2x Intel Xeon E5-2680v3, 2.5GHz    24      128GB    -
-  MIC accelerated   432     2x Intel Xeon E5-2680v3, 2.5GHz    24      128GB    2x Intel Xeon Phi 7120P, 61cores, 16GB RAM
-
-For more details please refer to the [Compute
-nodes](compute-nodes.html).
-
-Remote visualization nodes
---------------------------
-
-For remote visualization two nodes with NICE DCV software are available
-each configured:
-
-  Node            Count   Processor                         Cores   Memory   GPU Accelerator
-  --------------- ------- --------------------------------- ------- -------- ------------------------------
-  visualization   2       2x Intel Xeon E5-2695v3, 2.3GHz   28      512GB    NVIDIA QUADRO K5000, 4GB RAM
-
-SGI UV 2000
------------
-
-For large memory computations a special SMP/NUMA SGI UV 2000 server is
-available:
-
-<table style="width:100%;">
-<colgroup>
-<col width="16%" />
-<col width="16%" />
-<col width="16%" />
-<col width="16%" />
-<col width="16%" />
-<col width="16%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Node</th>
-<th align="left">Count</th>
-<th align="left">Processor</th>
-<th align="left">Cores</th>
-<th align="left">Memory</th>
-<th align="left">Extra HW</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left">UV2000</td>
-<td align="left">1</td>
-<td align="left">14x Intel Xeon E5-4627v2, 3.3GHz, 8cores</td>
-<td align="left">112</td>
-<td align="left">3328GB DDR3@1866MHz</td>
-<td align="left"><p>2x 400GB local SSD<br />
-1x NVIDIA GM200<br />
-(GeForce GTX TITAN X),<br />
-12GB RAM</p></td>
-</tr>
-</tbody>
-</table>
-
-![UV
-2000](uv-2000/@@images/04ce7514-8d27-4cdb-bf0f-45d875c75df0.jpeg "UV 2000")
-
diff --git a/docs.it4i.cz/salomon/list_of_modules.md b/docs.it4i.cz/salomon/list_of_modules.md
deleted file mode 100644
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--- a/docs.it4i.cz/salomon/list_of_modules.md
+++ /dev/null
@@ -1,3019 +0,0 @@
-List of Available Modules 
-=========================
-
-List of Available Modules on Salomon Cluster
-
-Categories
-----------
-
--   [base](list_of_modules.html#base)
--   [bio](list_of_modules.html#bio)
--   [cae](list_of_modules.html#cae)
--   [chem](list_of_modules.html#chem)
--   [compiler](list_of_modules.html#compiler)
--   [data](list_of_modules.html#data)
--   [debugger](list_of_modules.html#debugger)
--   [devel](list_of_modules.html#devel)
--   [geo](list_of_modules.html#geo)
--   [lang](list_of_modules.html#lang)
--   [lib](list_of_modules.html#lib)
--   [math](list_of_modules.html#math)
--   [mpi](list_of_modules.html#mpi)
--   [numlib](list_of_modules.html#numlib)
--   [perf](list_of_modules.html#perf)
--   [phys](list_of_modules.html#phys)
--   [system](list_of_modules.html#system)
--   [toolchain](list_of_modules.html#toolchain)
--   [tools](list_of_modules.html#tools)
--   [vis](list_of_modules.html#vis)
-
-
-[base](list_of_modules.html#categories "Go to list of categories...")
--------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>EasyBuild</strong><br />
-<a href="http://hpcugent.github.com/easybuild/" class="uri">http://hpcugent.github.com/easybuild/</a></td>
-<td align="left">EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.</td>
-<td align="left"><ul>
-<li>2.1.1</li>
-<li>2.2.0</li>
-<li>2.3.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Python</strong><br />
-<a href="http://python.org/" class="uri">http://python.org/</a></td>
-<td align="left">Python is a programming language that lets you work more quickly and integrate your systems more effectively.</td>
-<td align="left"><ul>
-<li>3.4.3-intel-2015b</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[bio](list_of_modules.html#categories "Go to list of categories...")
-------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>Amber</strong><br />
-<a href="http://ambermd.org" class="uri">http://ambermd.org</a></td>
-<td align="left">A set of molecular mechanical force fields for the simulation of biomolecules</td>
-<td align="left"><ul>
-<li>14</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>BCFtools</strong><br />
-<a href="http://www.htslib.org/" class="uri">http://www.htslib.org/</a></td>
-<td align="left">Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants</td>
-<td align="left"><ul>
-<li>1.3-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>BWA</strong><br />
-<a href="http://bio-bwa.sourceforge.net/" class="uri">http://bio-bwa.sourceforge.net/</a></td>
-<td align="left">Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.</td>
-<td align="left"><ul>
-<li>0.7.5a-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>FastQC</strong><br />
-<a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" class="uri">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/</a></td>
-<td align="left">FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.</td>
-<td align="left"><ul>
-<li>0.11.3</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>GATK</strong><br />
-<a href="http://www.broadinstitute.org/gatk/" class="uri">http://www.broadinstitute.org/gatk/</a></td>
-<td align="left">The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.</td>
-<td align="left"><ul>
-<li>2.6-5-Java-1.7.0_79</li>
-<li>3.5-Java-1.7.0_79</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>GROMACS</strong><br />
-<a href="http://www.gromacs.org" class="uri">http://www.gromacs.org</a></td>
-<td align="left">GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.</td>
-<td align="left"><ul>
-<li>4.6.7-foss-2015g-hybrid-single-PLUMED</li>
-<li>5.0.4-foss-2015e-hybrid-single-PLUMED</li>
-<li>5.0.4-foss-2015g-hybrid-single</li>
-<li>5.0.4-foss-2015g-hybrid-single-PLUMED</li>
-<li>5.0.4-ictce-7.3.5-hybrid-single</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>HTSlib</strong><br />
-<a href="http://www.htslib.org/" class="uri">http://www.htslib.org/</a></td>
-<td align="left">A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix</td>
-<td align="left"><ul>
-<li>1.3-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>PLUMED</strong><br />
-<a href="http://www.plumed-code.org" class="uri">http://www.plumed-code.org</a></td>
-<td align="left">PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.</td>
-<td align="left"><ul>
-<li>2.1.3-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>RELION</strong><br />
-<a href="http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page" class="uri">http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page</a></td>
-<td align="left">RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM).</td>
-<td align="left"><ul>
-<li>1.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>SAMtools</strong><br />
-<a href="http://www.htslib.org/" class="uri">http://www.htslib.org/</a></td>
-<td align="left">SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.</td>
-<td align="left"><ul>
-<li>1.3-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>SnpEff</strong><br />
-<a href="http://snpeff.sourceforge.net/" class="uri">http://snpeff.sourceforge.net/</a></td>
-<td align="left">Genetic variant annotation and effect prediction toolbox.</td>
-<td align="left"><ul>
-<li>4.1_G</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Trimmomatic</strong><br />
-<a href="http://www.usadellab.org/cms/?page=trimmomatic" class="uri">http://www.usadellab.org/cms/?page=trimmomatic</a></td>
-<td align="left">Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.</td>
-<td align="left"><ul>
-<li>0.35-Java-1.7.0_79</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>almost</strong><br />
-<a href="http://www-almost.ch.cam.ac.uk/site" class="uri">http://www-almost.ch.cam.ac.uk/site</a></td>
-<td align="left">all atom molecular simulation toolkit - is a fast and flexible molecular modeling environment that provides powerful and efficient algorithms for molecular simulation, homology modeling, de novo design and ab-initio calculations.</td>
-<td align="left"><ul>
-<li>2.1.0-foss-2015b</li>
-<li>2.1.0-foss-2015g</li>
-<li>2.1.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>picard</strong><br />
-<a href="http://sourceforge.net/projects/picard" class="uri">http://sourceforge.net/projects/picard</a></td>
-<td align="left">A set of tools (in Java) for working with next generation sequencing data in the BAM format.</td>
-<td align="left"><ul>
-<li>1.119</li>
-<li>2.1.0</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[cae](list_of_modules.html#categories "Go to list of categories...")
-------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>ANSYS</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>16.1</li>
-<li>17.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Adams</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>2013.2</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>COMSOL</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>51-COM</li>
-<li>51-EDU</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Digimat</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>5.0.1-COM</li>
-<li>5.0.1-EDU</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>FreeFem++</strong><br />
-<a href="http://www.freefem.org" class="uri">http://www.freefem.org</a></td>
-<td align="left">FreeFem++ is a partial differential equation solver. It has its own language. freefem scripts can solve multiphysics non linear systems in 2D and 3D. Problems involving PDE (2d, 3d) from several branches of physics such as fluid-structure interactions require interpolations of data on several meshes and their manipulation within one program. FreeFem++ includes a fast 2^d-tree-based interpolation algorithm and a language for the manipulation of data on multiple meshes (as a follow up of bamg (now a part of FreeFem++ ). FreeFem++ is written in C++ and the FreeFem++ language is a C++ idiom. It runs on Macs, Windows, Unix machines. FreeFem++ replaces the older freefem and freefem+.</td>
-<td align="left"><ul>
-<li>3.45-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>HyperWorks</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>13.0</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Marc</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>2013.1.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>OpenFOAM</strong><br />
-<a href="http://www.openfoam.com/" class="uri">http://www.openfoam.com/</a></td>
-<td align="left">OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.</td>
-<td align="left"><ul>
-<li>2.2.2-intel-2015b</li>
-<li>2.3.0-intel-2015b</li>
-<li>3.0.0-intel-2016.01</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[chem](list_of_modules.html#categories "Go to list of categories...")
--------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>ABINIT</strong><br />
-<a href="http://www.abinit.org/" class="uri">http://www.abinit.org/</a></td>
-<td align="left">Abinit is a plane wave pseudopotential code for doing condensed phase electronic structure calculations using DFT.</td>
-<td align="left"><ul>
-<li>7.10.1-foss-2015b</li>
-<li>7.10.1-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>CP2K</strong><br />
-<a href="http://www.cp2k.org/" class="uri">http://www.cp2k.org/</a></td>
-<td align="left">CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.</td>
-<td align="left"><ul>
-<li>2.6.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>LAMMPS</strong><br />
-<a href="http://lammps.sandia.gov" class="uri">http://lammps.sandia.gov</a></td>
-<td align="left">LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale.</td>
-<td align="left"><ul>
-<li>28Jun14-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Libint</strong><br />
-<a href="https://sourceforge.net/p/libint/" class="uri">https://sourceforge.net/p/libint/</a></td>
-<td align="left">Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.</td>
-<td align="left"><ul>
-<li>1.1.4-foss-2015b</li>
-<li>1.1.4-gompi-2015b</li>
-<li>1.1.4-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Molpro</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>2010.1-patch-57-intel2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>NAMD</strong><br />
-<a href="http://www.ks.uiuc.edu/Research/namd/" class="uri">http://www.ks.uiuc.edu/Research/namd/</a></td>
-<td align="left">NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.</td>
-<td align="left"><ul>
-<li>2.9-mpi</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>NWChem</strong><br />
-<a href="http://www.nwchem-sw.org" class="uri">http://www.nwchem-sw.org</a></td>
-<td align="left">NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties and relativity.</td>
-<td align="left"><ul>
-<li>6.3.revision2-2013-10-17-Python-2.7.8</li>
-<li>6.5.revision26243-intel-2015b-2014-09-10-Python-2.7.8</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>S4MPLE</strong><br />
-<a href="http://infochim.u-strasbg.fr/spip.php?rubrique152" class="uri">http://infochim.u-strasbg.fr/spip.php?rubrique152</a></td>
-<td align="left">S4MPLE (Sampler For Multiple Protein-Ligand Entities) is a flexible molecular modeling tool, supporting empirical force field-driven conformational sampling and geometry optimization heuristics using a hybrid genetic algorithm (GA).</td>
-<td align="left"><ul>
-<li>1.0.0</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libctl</strong><br />
-<a href="http://ab-initio.mit.edu/libctl" class="uri">http://ab-initio.mit.edu/libctl</a></td>
-<td align="left">libctl is a free Guile-based library implementing flexible control files for scientific simulations.</td>
-<td align="left"><ul>
-<li>3.2.2-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libxc</strong><br />
-<a href="http://www.tddft.org/programs/octopus/wiki/index.php/Libxc" class="uri">http://www.tddft.org/programs/octopus/wiki/index.php/Libxc</a></td>
-<td align="left">Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.</td>
-<td align="left"><ul>
-<li>2.2.0-foss-2015b</li>
-<li>2.2.0-gompi-2015b</li>
-<li>2.2.1-intel-2015b</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[compiler](list_of_modules.html#categories "Go to list of categories...")
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-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>BerkeleyUPC</strong><br />
-<a href="http://upc.lbl.gov" class="uri">http://upc.lbl.gov</a></td>
-<td align="left">The goal of the Berkeley UPC compiler group is to develop a portable, high performance implementation of UPC for large-scale multiprocessors, PC clusters, and clusters of shared memory multiprocessors.</td>
-<td align="left"><ul>
-<li>2.16.2-gompi-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Clang</strong><br />
-<a href="http://clang.llvm.org/" class="uri">http://clang.llvm.org/</a></td>
-<td align="left">C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.</td>
-<td align="left"><ul>
-<li>3.7.0-GNU-5.1.0-2.25</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>GCC</strong><br />
-<a href="http://gcc.gnu.org/" class="uri">http://gcc.gnu.org/</a></td>
-<td align="left">The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).</td>
-<td align="left"><ul>
-<li>4.4.7-system</li>
-<li>4.7.4</li>
-<li>4.8.3</li>
-<li>4.9.2-binutils-2.25</li>
-<li>4.9.3</li>
-<li>4.9.3-2.25</li>
-<li>4.9.3-binutils-2.25</li>
-<li>5.1.0-binutils-2.25</li>
-<li>5.2.0</li>
-<li>5.3.0-2.25</li>
-<li>5.3.0-2.26</li>
-<li>5.3.0-binutils-2.25</li>
-<li>5.3.1-snapshot-20160419-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>GCCcore</strong><br />
-<a href="http://gcc.gnu.org/" class="uri">http://gcc.gnu.org/</a></td>
-<td align="left">The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).</td>
-<td align="left"><ul>
-<li>4.9.3</li>
-<li>5.3.0</li>
-<li>5.3.1-snapshot-20160419</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>LLVM</strong><br />
-<a href="http://llvm.org/" class="uri">http://llvm.org/</a></td>
-<td align="left">The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation (&quot;LLVM IR&quot;). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.</td>
-<td align="left"><ul>
-<li>3.7.1-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>OpenCoarrays</strong><br />
-<a href="http://www.opencoarrays.org/" class="uri">http://www.opencoarrays.org/</a></td>
-<td align="left">A transport layer for coarray Fortran compilers.</td>
-<td align="left"><ul>
-<li>1.4.0-GCC-5.3.0-2.25</li>
-<li>1.4.0-GCC-5.3.1-snapshot-20160419-2.25</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>PGI</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>15.7</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>icc</strong><br />
-<a href="http://software.intel.com/en-us/intel-compilers/" class="uri">http://software.intel.com/en-us/intel-compilers/</a></td>
-<td align="left">C and C++ compiler from Intel</td>
-<td align="left"><ul>
-<li>2013.5.192</li>
-<li>2013.5.192-GCC-4.8.3</li>
-<li>2015.3.187</li>
-<li>2015.3.187-GNU-4.9.3-2.25</li>
-<li>2015.3.187-GNU-5.1.0-2.25</li>
-<li>2016.0.109-GCC-4.9.3</li>
-<li>2016.1.150</li>
-<li>2016.1.150-GCC-4.9.3</li>
-<li>2016.1.150-GCC-4.9.3-2.25</li>
-<li>2016.3.210-GCC-5.3.0-2.26</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>ifort</strong><br />
-<a href="http://software.intel.com/en-us/intel-compilers/" class="uri">http://software.intel.com/en-us/intel-compilers/</a></td>
-<td align="left">Fortran compiler from Intel</td>
-<td align="left"><ul>
-<li>2013.5.192</li>
-<li>2013.5.192-GCC-4.8.3</li>
-<li>2015.3.187</li>
-<li>2015.3.187-GNU-4.9.3-2.25</li>
-<li>2015.3.187-GNU-5.1.0-2.25</li>
-<li>2016.0.109-GCC-4.9.3</li>
-<li>2016.1.150</li>
-<li>2016.1.150-GCC-4.9.3</li>
-<li>2016.1.150-GCC-4.9.3-2.25</li>
-<li>2016.3.210-GCC-5.3.0-2.26</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[data](list_of_modules.html#categories "Go to list of categories...")
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-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>GDAL</strong><br />
-<a href="http://www.gdal.org/" class="uri">http://www.gdal.org/</a></td>
-<td align="left">GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.</td>
-<td align="left"><ul>
-<li>1.9.2-foss-2015g</li>
-<li>2.0.1-foss-2015b</li>
-<li>2.1.0-GNU-5.1.0-2.25</li>
-<li>2.1.0-GNU-5.1.0-2.25-intel-2015b</li>
-<li>2.1.0-foss-2015g</li>
-<li>2.1.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>HDF5</strong><br />
-<a href="http://www.hdfgroup.org/HDF5/" class="uri">http://www.hdfgroup.org/HDF5/</a></td>
-<td align="left">HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.</td>
-<td align="left"><ul>
-<li>1.10.0-patch1-intel-2016.01-mic</li>
-<li>1.8.13-foss-2015g</li>
-<li>1.8.13-intel-2015b</li>
-<li>1.8.13-intel-2015b-no-mpi</li>
-<li>1.8.13-intel-2016.01</li>
-<li>1.8.14-ictce-7.3.5-serial</li>
-<li>1.8.15-patch1-foss-2015b</li>
-<li>1.8.16-foss-2015g</li>
-<li>1.8.16-intel-2015b</li>
-<li>1.8.16-intel-2015b-threadsafe</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>h5py</strong><br />
-<a href="http://www.h5py.org/" class="uri">http://www.h5py.org/</a></td>
-<td align="left">HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.</td>
-<td align="left"><ul>
-<li>2.4.0-ictce-7.3.5-Python-2.7.9-serial</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>netCDF</strong><br />
-<a href="http://www.unidata.ucar.edu/software/netcdf/" class="uri">http://www.unidata.ucar.edu/software/netcdf/</a></td>
-<td align="left">NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.</td>
-<td align="left"><ul>
-<li>4.3.2-foss-2015g</li>
-<li>4.3.2-intel-2015b</li>
-<li>4.3.2-intel-2016.01</li>
-<li>4.3.3.1-foss-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>netCDF-Fortran</strong><br />
-<a href="http://www.unidata.ucar.edu/software/netcdf/" class="uri">http://www.unidata.ucar.edu/software/netcdf/</a></td>
-<td align="left">NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.</td>
-<td align="left"><ul>
-<li>4.4.0-intel-2016.01</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[debugger](list_of_modules.html#categories "Go to list of categories...")
------------------------------------------------------------------------------------
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-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>DDT</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>4.2</li>
-<li>5.0.1</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Forge</strong><br />
-<a href="http://www.allinea.com/products/develop-allinea-forge" class="uri">http://www.allinea.com/products/develop-allinea-forge</a></td>
-<td align="left">Allinea Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and FORTRAN applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.</td>
-<td align="left"><ul>
-<li>5.1-43967</li>
-<li>6.0.5</li>
-<li>6.0.6</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>PerformanceReports</strong><br />
-<a href="http://www.allinea.com/products/allinea-performance-reports" class="uri">http://www.allinea.com/products/allinea-performance-reports</a></td>
-<td align="left">Allinea Performance Reports are the most effective way to characterize and understand the performance of HPC application runs. One single-page HTML report elegantly answers a range of vital questions for any HPC site. - Is this application well-optimized for the system and the processors it is running on? - Does it benefit from running at this scale? - Are there I/O, networking or threading bottlenecks affecting performance? - Which hardware, software or configuration changes can we make to improve performance further. - How much energy did this application use?</td>
-<td align="left"><ul>
-<li>5.1-43967</li>
-<li>6.0.6</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>TotalView</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>8.15.4-6-linux-x86-64</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Valgrind</strong><br />
-<a href="http://valgrind.org/downloads/" class="uri">http://valgrind.org/downloads/</a></td>
-<td align="left">Valgrind: Debugging and profiling tools</td>
-<td align="left"><ul>
-<li>3.11.0-foss-2015b</li>
-<li>3.11.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>aislinn</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>20160105-Python-2.7.9-gompi-2015e</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[devel](list_of_modules.html#categories "Go to list of categories...")
---------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>Autoconf</strong><br />
-<a href="http://www.gnu.org/software/autoconf/" class="uri">http://www.gnu.org/software/autoconf/</a></td>
-<td align="left">Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.</td>
-<td align="left"><ul>
-<li>2.69</li>
-<li>2.69-GCC-4.9.3-2.25</li>
-<li>2.69-GNU-4.9.3-2.25</li>
-<li>2.69-GNU-5.1.0-2.25</li>
-<li>2.69-foss-2015g</li>
-<li>2.69-intel-2015b</li>
-<li>2.69-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Automake</strong><br />
-<a href="http://www.gnu.org/software/automake/automake.html" class="uri">http://www.gnu.org/software/automake/automake.html</a></td>
-<td align="left">Automake: GNU Standards-compliant Makefile generator</td>
-<td align="left"><ul>
-<li>1.15</li>
-<li>1.15-GCC-4.9.3-2.25</li>
-<li>1.15-GNU-4.9.3-2.25</li>
-<li>1.15-GNU-5.1.0-2.25</li>
-<li>1.15-foss-2015g</li>
-<li>1.15-intel-2015b</li>
-<li>1.15-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Autotools</strong><br />
-<a href="http://autotools.io" class="uri">http://autotools.io</a></td>
-<td align="left">This bundle collect the standard GNU build tools: Autoconf, Automake and libtool</td>
-<td align="left"><ul>
-<li>20150215</li>
-<li>20150215-GCC-4.9.3-2.25</li>
-<li>20150215-GNU-4.9.3-2.25</li>
-<li>20150215-GNU-5.1.0-2.25</li>
-<li>20150215-intel-2015b</li>
-<li>20150215-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Boost</strong><br />
-<a href="http://www.boost.org/" class="uri">http://www.boost.org/</a></td>
-<td align="left">Boost provides free peer-reviewed portable C++ source libraries.</td>
-<td align="left"><ul>
-<li>1.58.0-Python-2.7.9</li>
-<li>1.58.0-foss-2015g-Python-2.7.9</li>
-<li>1.58.0-gompi-2015e-Python-2.7.9</li>
-<li>1.58.0-ictce-7.3.5-Python-2.7.9</li>
-<li>1.58.0-intel-2015b-Python-2.7.9</li>
-<li>1.58.0-intel-2016.01-Python-2.7.9</li>
-<li>1.59.0-intel-2015b-Python-2.7.11</li>
-<li>1.59.0-intel-2016.01</li>
-<li>1.60.0-foss-2015g-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>CMake</strong><br />
-<a href="http://www.cmake.org" class="uri">http://www.cmake.org</a></td>
-<td align="left">CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.</td>
-<td align="left"><ul>
-<li>3.0.0-foss-2015g</li>
-<li>3.0.0-ictce-7.3.5</li>
-<li>3.0.0-intel-2015b</li>
-<li>3.0.0-intel-2016.01</li>
-<li>3.3.1-GCC-5.3.0-2.25</li>
-<li>3.3.1-GCC-5.3.1-snapshot-20160419-2.25</li>
-<li>3.3.1-GNU-4.9.3-2.25</li>
-<li>3.3.1-GNU-5.1.0-2.25</li>
-<li>3.3.1-foss-2015g</li>
-<li>3.3.1-intel-2016.01</li>
-<li>3.3.2-GNU-4.9.3-2.25</li>
-<li>3.3.2-intel-2016.01</li>
-<li>3.4.1-GCCcore-4.9.3</li>
-<li>3.4.1-foss-2015b</li>
-<li>3.4.1-intel-2015b</li>
-<li>3.5.2</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Doxygen</strong><br />
-<a href="http://www.doxygen.org" class="uri">http://www.doxygen.org</a></td>
-<td align="left">Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.</td>
-<td align="left"><ul>
-<li>1.8.10-foss-2015b</li>
-<li>1.8.11</li>
-<li>1.8.7-foss-2015g</li>
-<li>1.8.7-intel-2015b</li>
-<li>1.8.7-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>JUnit</strong><br />
-<a href="http://sourceforge.net/projects/junit" class="uri">http://sourceforge.net/projects/junit</a></td>
-<td align="left">A programmer-oriented testing framework for Java.</td>
-<td align="left"><ul>
-<li>4.11-Java-1.7.0_79</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>M4</strong><br />
-<a href="http://www.gnu.org/software/m4/m4.html" class="uri">http://www.gnu.org/software/m4/m4.html</a></td>
-<td align="left">GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.</td>
-<td align="left"><ul>
-<li>1.4.16-foss-2015g</li>
-<li>1.4.16-intel-2015b</li>
-<li>1.4.17</li>
-<li>1.4.17-GCC-4.9.3-2.25</li>
-<li>1.4.17-GCC-4.9.3-binutils-2.25</li>
-<li>1.4.17-GCC-5.1.0-binutils-2.25</li>
-<li>1.4.17-GCCcore-4.9.3</li>
-<li>1.4.17-GCCcore-5.3.0</li>
-<li>1.4.17-GCCcore-5.3.1-snapshot-20160419</li>
-<li>1.4.17-GNU-4.9.3-2.25</li>
-<li>1.4.17-GNU-5.1.0-2.25</li>
-<li>1.4.17-foss-2015b</li>
-<li>1.4.17-foss-2015g</li>
-<li>1.4.17-intel-2015b</li>
-<li>1.4.17-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Maven</strong><br />
-<a href="http://maven.apache.org/index.html" class="uri">http://maven.apache.org/index.html</a></td>
-<td align="left">Binary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.</td>
-<td align="left"><ul>
-<li>3.3.9</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>PCRE</strong><br />
-<a href="http://www.pcre.org/" class="uri">http://www.pcre.org/</a></td>
-<td align="left">The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.</td>
-<td align="left"><ul>
-<li>8.36-foss-2015g</li>
-<li>8.36-intel-2015b</li>
-<li>8.36-intel-2016.01</li>
-<li>8.37</li>
-<li>8.37-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Qt</strong><br />
-<a href="http://qt-project.org/" class="uri">http://qt-project.org/</a></td>
-<td align="left">Qt is a comprehensive cross-platform C++ application framework.</td>
-<td align="left"><ul>
-<li>4.8.6</li>
-<li>4.8.6-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>SCons</strong><br />
-<a href="http://www.scons.org/" class="uri">http://www.scons.org/</a></td>
-<td align="left">SCons is a software construction tool.</td>
-<td align="left"><ul>
-<li>2.3.6-Python-2.7.9</li>
-<li>2.3.6-foss-2015g-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>SQLite</strong><br />
-<a href="http://www.sqlite.org/" class="uri">http://www.sqlite.org/</a></td>
-<td align="left">SQLite: SQL Database Engine in a C Library</td>
-<td align="left"><ul>
-<li>3.10.1-foss-2015g</li>
-<li>3.8.10.2-GCC-4.9.3-2.25</li>
-<li>3.8.10.2-GNU-4.9.3-2.25</li>
-<li>3.8.8.1</li>
-<li>3.8.8.1-GNU-5.1.0-2.25</li>
-<li>3.8.8.1-foss-2015b</li>
-<li>3.8.8.1-foss-2015g</li>
-<li>3.8.8.1-gompi-2015e</li>
-<li>3.8.8.1-ictce-7.3.5</li>
-<li>3.8.8.1-intel-2015b</li>
-<li>3.8.8.1-intel-2016.01</li>
-<li>3.9.2-foss-2015g</li>
-<li>3.9.2-intel-2015b</li>
-<li>3.9.2-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>SWIG</strong><br />
-<a href="http://www.swig.org/" class="uri">http://www.swig.org/</a></td>
-<td align="left">SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.</td>
-<td align="left"><ul>
-<li>2.0.12-Python-2.7.9</li>
-<li>2.0.12-intel-2015b-Python-2.7.9</li>
-<li>3.0.7-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Spark</strong><br />
-<a href="http://spark.apache.org" class="uri">http://spark.apache.org</a></td>
-<td align="left">Spark is Hadoop MapReduce done in memory</td>
-<td align="left"><ul>
-<li>1.5.2</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>ant</strong><br />
-<a href="http://ant.apache.org/" class="uri">http://ant.apache.org/</a></td>
-<td align="left">Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.</td>
-<td align="left"><ul>
-<li>1.9.3-Java-1.7.0_79</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>fontsproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X11 font extension wire protocol</td>
-<td align="left"><ul>
-<li>2.1.3-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>glproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X protocol and ancillary headers</td>
-<td align="left"><ul>
-<li>1.4.16-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>gperf</strong><br />
-<a href="http://www.gnu.org/software/gperf/" class="uri">http://www.gnu.org/software/gperf/</a></td>
-<td align="left">GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.</td>
-<td align="left"><ul>
-<li>3.0.4-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>guile</strong><br />
-<a href="http://www.gnu.org/software/guile" class="uri">http://www.gnu.org/software/guile</a></td>
-<td align="left">Guile is the GNU Ubiquitous Intelligent Language for Extensions, the official extension language for the GNU operating system.</td>
-<td align="left"><ul>
-<li>1.8.8</li>
-<li>1.8.8-foss-2015b</li>
-<li>1.8.8-foss-2015g</li>
-<li>1.8.8-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libSM</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X11 Session Management library, which allows for applications to both manage sessions, and make use of session managers to save and restore their state for later use.</td>
-<td align="left"><ul>
-<li>1.2.2</li>
-<li>1.2.2-foss-2015g</li>
-<li>1.2.2-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>make</strong><br />
-<a href="http://www.gnu.org/software/make/make.html" class="uri">http://www.gnu.org/software/make/make.html</a></td>
-<td align="left">make-3.82: GNU version of make utility</td>
-<td align="left"><ul>
-<li>3.82</li>
-<li>3.82-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>makedepend</strong><br />
-<a href="http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" class="uri">http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html</a></td>
-<td align="left">The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.</td>
-<td align="left"><ul>
-<li>1.0.4</li>
-<li>1.0.4-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>ncurses</strong><br />
-<a href="http://www.gnu.org/software/ncurses/" class="uri">http://www.gnu.org/software/ncurses/</a></td>
-<td align="left">The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.</td>
-<td align="left"><ul>
-<li>5.9</li>
-<li>5.9-GCC-5.3.0-2.25</li>
-<li>5.9-GCC-5.3.1-snapshot-20160419-2.25</li>
-<li>5.9-GNU-4.9.3-2.25</li>
-<li>5.9-GNU-5.1.0-2.25</li>
-<li>5.9-foss-2015b</li>
-<li>5.9-foss-2015g</li>
-<li>5.9-gompi-2015e</li>
-<li>5.9-ictce-5.5.0</li>
-<li>5.9-ictce-7.3.5</li>
-<li>5.9-intel-2015b</li>
-<li>5.9-intel-2016.01</li>
-<li>6.0</li>
-<li>6.0-GCCcore-4.9.3</li>
-<li>6.0-foss-2015b</li>
-<li>6.0-foss-2015g</li>
-<li>6.0-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>pkg-config</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/pkg-config/" class="uri">http://www.freedesktop.org/wiki/Software/pkg-config/</a></td>
-<td align="left">pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).</td>
-<td align="left"><ul>
-<li>0.27.1</li>
-<li>0.27.1-foss-2015b</li>
-<li>0.27.1-foss-2015g</li>
-<li>0.27.1-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>python-meep</strong><br />
-<a href="https://code.launchpad.net/python-meep" class="uri">https://code.launchpad.net/python-meep</a></td>
-<td align="left">Python wrapper for the Meep FDTD solver.</td>
-<td align="left"><ul>
-<li>1.4.2-intel-2015b-Python-2.7.9-Meep-1.3</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>renderproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">Xrender protocol and ancillary headers</td>
-<td align="left"><ul>
-<li>0.11</li>
-<li>0.11-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>xbitmaps</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">provides bitmaps for x</td>
-<td align="left"><ul>
-<li>1.1.1</li>
-<li>1.1.1-foss-2015g</li>
-<li>1.1.1-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>xcb-proto</strong><br />
-<a href="http://xcb.freedesktop.org/" class="uri">http://xcb.freedesktop.org/</a></td>
-<td align="left">The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.</td>
-<td align="left"><ul>
-<li>1.10-Python-2.7.8</li>
-<li>1.11-Python-2.7.9</li>
-<li>1.11-foss-2015g-Python-2.7.9</li>
-<li>1.11-intel-2015b-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>xextproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">XExtProto protocol headers.</td>
-<td align="left"><ul>
-<li>7.3.0</li>
-<li>7.3.0-foss-2015g</li>
-<li>7.3.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>xineramaproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X protocol and ancillary headers for xinerama</td>
-<td align="left"><ul>
-<li>1.2.1</li>
-<li>1.2.1-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>xorg-macros</strong><br />
-<a href="http://cgit.freedesktop.org/xorg/util/macros" class="uri">http://cgit.freedesktop.org/xorg/util/macros</a></td>
-<td align="left">X.org macros utilities.</td>
-<td align="left"><ul>
-<li>1.17</li>
-<li>1.17-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>xproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X protocol and ancillary headers</td>
-<td align="left"><ul>
-<li>7.0.26</li>
-<li>7.0.26-foss-2015g</li>
-<li>7.0.26-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>xtrans</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">xtrans includes a number of routines to make X implementations transport-independent; at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet.</td>
-<td align="left"><ul>
-<li>1.3.4-intel-2015b</li>
-<li>1.3.5</li>
-<li>1.3.5-foss-2015g</li>
-<li>1.3.5-intel-2015b</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[geo](list_of_modules.html#categories "Go to list of categories...")
-------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>DCW</strong><br />
-<a href="http://gmt.soest.hawaii.edu/projects/gmt" class="uri">http://gmt.soest.hawaii.edu/projects/gmt</a></td>
-<td align="left">country polygons for GMT</td>
-<td align="left"><ul>
-<li>1.1.2</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>GMT</strong><br />
-<a href="http://gmt.soest.hawaii.edu/" class="uri">http://gmt.soest.hawaii.edu/</a></td>
-<td align="left">GMT is an open source collection of about 80 command-line tools for manipulating geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, etc.) and producing PostScript illustrations ranging from simple x-y plots via contour maps to artificially illuminated surfaces and 3D perspective views; the GMT supplements add another 40 more specialized and discipline-specific tools.</td>
-<td align="left"><ul>
-<li>5.2.1-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>PROJ_4</strong><br />
-<a href="http://proj.osgeo.org" class="uri">http://proj.osgeo.org</a></td>
-<td align="left">PROJ.4 - Cartographic Projections Library originally written by Gerald Evenden then of the USGS.</td>
-<td align="left"><ul>
-<li>4.9.2-foss-2015g</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[lang](list_of_modules.html#categories "Go to list of categories...")
--------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>Bison</strong><br />
-<a href="http://www.gnu.org/software/bison" class="uri">http://www.gnu.org/software/bison</a></td>
-<td align="left">Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.</td>
-<td align="left"><ul>
-<li>2.5-intel-2015b</li>
-<li>2.7-GNU-5.1.0-2.25</li>
-<li>2.7-foss-2015b</li>
-<li>2.7-foss-2015g</li>
-<li>2.7-intel-2015b</li>
-<li>3.0.2</li>
-<li>3.0.2-foss-2015g</li>
-<li>3.0.2-intel-2015b</li>
-<li>3.0.2-intel-2016.01</li>
-<li>3.0.4</li>
-<li>3.0.4-GCC-4.9.3-binutils-2.25</li>
-<li>3.0.4-GCC-5.1.0-binutils-2.25</li>
-<li>3.0.4-GCCcore-4.9.3</li>
-<li>3.0.4-GCCcore-5.3.0</li>
-<li>3.0.4-GCCcore-5.3.1-snapshot-20160419</li>
-<li>3.0.4-foss-2015b</li>
-<li>3.0.4-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Java</strong><br />
-<a href="http://java.com/" class="uri">http://java.com/</a></td>
-<td align="left">Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.</td>
-<td align="left"><ul>
-<li>1.7.0_79</li>
-<li>1.8.0_51</li>
-<li>1.8.0_72</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Mono</strong><br />
-<a href="http://www.mono-project.com" class="uri">http://www.mono-project.com</a></td>
-<td align="left">Mono is an open source implementation of Microsoft's .NET Framework based on the ECMA standards for C# and the Common Language Runtime.</td>
-<td align="left"><ul>
-<li>3.12.1</li>
-<li>3.12.1-GCC-4.4.7-system</li>
-<li>4.0.3.20-GNU-5.1.0-2.25</li>
-<li>4.2.2.10-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>NASM</strong><br />
-<a href="http://www.nasm.us/" class="uri">http://www.nasm.us/</a></td>
-<td align="left">NASM: General-purpose x86 assembler</td>
-<td align="left"><ul>
-<li>2.11.05</li>
-<li>2.11.05-foss-2015b</li>
-<li>2.11.05-foss-2015g</li>
-<li>2.11.05-intel-2015b</li>
-<li>2.11.06-intel-2015b</li>
-<li>2.11.08-foss-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>OpenCL-builder</strong><br />
-<a href="https://software.intel.com/en-us/intel-opencl" class="uri">https://software.intel.com/en-us/intel-opencl</a></td>
-<td align="left">OpenCL™ is the first open, royalty-free standard for cross-platform, parallel programming of modern processors found in personal computers, servers and handheld/embedded devices. OpenCL (Open Computing Language) greatly improves speed and responsiveness for a wide spectrum of applications in numerous market categories from gaming and entertainment to scientific and medical software. This is builder (formerly runtime) package.</td>
-<td align="left"><ul>
-<li>2015</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>OpenCL-runtime</strong><br />
-<a href="https://software.intel.com/en-us/intel-opencl" class="uri">https://software.intel.com/en-us/intel-opencl</a></td>
-<td align="left">OpenCL™ is the first open, royalty-free standard for cross-platform, parallel programming of modern processors found in personal computers, servers and handheld/embedded devices. OpenCL (Open Computing Language) greatly improves speed and responsiveness for a wide spectrum of applications in numerous market categories from gaming and entertainment to scientific and medical software.</td>
-<td align="left"><ul>
-<li>15.1</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Perl</strong><br />
-<a href="http://www.perl.org/" class="uri">http://www.perl.org/</a></td>
-<td align="left">Larry Wall's Practical Extraction and Report Language</td>
-<td align="left"><ul>
-<li>5.16.3-intel-2015b</li>
-<li>5.20.2-GNU-4.9.3-2.25-bare</li>
-<li>5.20.2-bare</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Python</strong><br />
-<a href="http://python.org/" class="uri">http://python.org/</a></td>
-<td align="left">Python is a programming language that lets you work more quickly and integrate your systems more effectively.</td>
-<td align="left"><ul>
-<li>2.7.10-GCC-4.9.3-2.25-bare</li>
-<li>2.7.10-GNU-4.9.3-2.25-bare</li>
-<li>2.7.11-intel-2015b</li>
-<li>2.7.8-intel-2015b</li>
-<li>2.7.8-intel-2016.01</li>
-<li>2.7.9</li>
-<li>2.7.9-GNU-5.1.0-2.25</li>
-<li>2.7.9-foss-2015b</li>
-<li>2.7.9-foss-2015g</li>
-<li>2.7.9-gompi-2015e</li>
-<li>2.7.9-ictce-7.3.5</li>
-<li>2.7.9-intel-2015b</li>
-<li>2.7.9-intel-2016.01</li>
-<li>3.5.1-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>R</strong><br />
-<a href="http://www.r-project.org/" class="uri">http://www.r-project.org/</a></td>
-<td align="left">R is a free software environment for statistical computing and graphics.</td>
-<td align="left"><ul>
-<li>3.1.1-intel-2015b</li>
-<li>3.2.3-foss-2015b</li>
-<li>3.2.3-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Racket</strong><br />
-<a href="http://racket-lang.org" class="uri">http://racket-lang.org</a></td>
-<td align="left">Racket is a full-spectrum programming language. It goes beyond Lisp and Scheme with dialects that support objects, types, laziness, and more.</td>
-<td align="left"><ul>
-<li>6.1.1-GNU-5.1.0-2.25</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Ruby</strong><br />
-<a href="https://www.ruby-lang.org" class="uri">https://www.ruby-lang.org</a></td>
-<td align="left">Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.</td>
-<td align="left"><ul>
-<li>2.1.5-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>SIP</strong><br />
-<a href="http://www.riverbankcomputing.com/software/sip/" class="uri">http://www.riverbankcomputing.com/software/sip/</a></td>
-<td align="left">SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.</td>
-<td align="left"><ul>
-<li>4.16.4-foss-2015g-Python-2.7.9</li>
-<li>4.17-foss-2015g-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>SnuCL</strong><br />
-<a href="http://snucl.snu.ac.kr" class="uri">http://snucl.snu.ac.kr</a></td>
-<td align="left">An OpenCL Framework for Heterogeneous Clusters</td>
-<td align="left"><ul>
-<li>1.3.3-gompi-2015e</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Tcl</strong><br />
-<a href="http://www.tcl.tk/" class="uri">http://www.tcl.tk/</a></td>
-<td align="left">Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.</td>
-<td align="left"><ul>
-<li>8.5.12-intel-2015b</li>
-<li>8.6.3</li>
-<li>8.6.3-GNU-5.1.0-2.25</li>
-<li>8.6.3-foss-2015b</li>
-<li>8.6.3-foss-2015g</li>
-<li>8.6.3-gompi-2015e</li>
-<li>8.6.3-ictce-7.3.5</li>
-<li>8.6.3-intel-2015b</li>
-<li>8.6.3-intel-2016.01</li>
-<li>8.6.4</li>
-<li>8.6.4-GCC-4.9.3-2.25</li>
-<li>8.6.4-GNU-4.9.3-2.25</li>
-<li>8.6.4-foss-2015b</li>
-<li>8.6.4-foss-2015g</li>
-<li>8.6.4-intel-2015b</li>
-<li>8.6.4-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>byacc</strong><br />
-<a href="http://invisible-island.net/byacc/byacc.html" class="uri">http://invisible-island.net/byacc/byacc.html</a></td>
-<td align="left">Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available. In contrast to bison, it is written to avoid dependencies upon a particular compiler.</td>
-<td align="left"><ul>
-<li>20120526</li>
-<li>20120526-foss-2015b</li>
-<li>20120526-foss-2015g</li>
-<li>20120526-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>flex</strong><br />
-<a href="http://flex.sourceforge.net/" class="uri">http://flex.sourceforge.net/</a></td>
-<td align="left">Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.</td>
-<td align="left"><ul>
-<li>2.5.35-intel-2015b</li>
-<li>2.5.37-intel-2015b</li>
-<li>2.5.38-GCC-4.8.3</li>
-<li>2.5.39</li>
-<li>2.5.39-GCC-4.9.3-binutils-2.25</li>
-<li>2.5.39-GCC-5.1.0-binutils-2.25</li>
-<li>2.5.39-GCCcore-4.9.3</li>
-<li>2.5.39-GCCcore-5.3.0</li>
-<li>2.5.39-GCCcore-5.3.1-snapshot-20160419</li>
-<li>2.5.39-foss-2015b</li>
-<li>2.5.39-foss-2015g</li>
-<li>2.5.39-intel-2015b</li>
-<li>2.5.39-intel-2016.01</li>
-<li>2.6.0</li>
-<li>2.6.0-GCCcore-5.3.0</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libgdiplus</strong><br />
-<a href="https://github.com/mono/libgdiplus" class="uri">https://github.com/mono/libgdiplus</a></td>
-<td align="left">An Open Source implementation of the GDI+ API.</td>
-<td align="left"><ul>
-<li>3.12</li>
-<li>3.12-GCC-4.4.7-system</li>
-<li>3.12-GNU-5.1.0-2.25</li>
-<li>3.12-intel-2016.01</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[lib](list_of_modules.html#categories "Go to list of categories...")
-------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>FOX</strong><br />
-<a href="http://fox-toolkit.org" class="uri">http://fox-toolkit.org</a></td>
-<td align="left">FOX is a C++ based Toolkit for developing Graphical User Interfaces easily and effectively. It offers a wide, and growing, collection of Controls, and provides state of the art facilities such as drag and drop, selection, as well as OpenGL widgets for 3D graphical manipulation.</td>
-<td align="left"><ul>
-<li>1.6.51-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>LibTIFF</strong><br />
-<a href="http://www.remotesensing.org/libtiff/" class="uri">http://www.remotesensing.org/libtiff/</a></td>
-<td align="left">tiff: Library and tools for reading and writing TIFF data files</td>
-<td align="left"><ul>
-<li>4.0.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>OpenCoarrays</strong><br />
-<a href="http://www.opencoarrays.org" class="uri">http://www.opencoarrays.org</a></td>
-<td align="left">OpenCoarrays is an open-source software project for developing, porting and tuning transport layers that support coarray Fortran compilers.</td>
-<td align="left"><ul>
-<li>1.0.0-GNU-5.1.0-2.25</li>
-<li>1.0.1-GNU-5.1.0-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>PROJ</strong><br />
-<a href="http://trac.osgeo.org/proj/" class="uri">http://trac.osgeo.org/proj/</a></td>
-<td align="left">Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates</td>
-<td align="left"><ul>
-<li>4.8.0-foss-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>QCA</strong><br />
-<a href="http://delta.affinix.com/qca/" class="uri">http://delta.affinix.com/qca/</a></td>
-<td align="left">QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers</td>
-<td align="left"><ul>
-<li>2.1.0-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>QGIS</strong><br />
-<a href="http://www.qgis.org" class="uri">http://www.qgis.org</a></td>
-<td align="left">A Free and Open Source Geographic Information System</td>
-<td align="left"><ul>
-<li>2.12.3-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Qwt</strong><br />
-<a href="http://qwt.sourceforge.net/index.html" class="uri">http://qwt.sourceforge.net/index.html</a></td>
-<td align="left">The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background. Beside a framework for 2D plots it provides scales, sliders, dials, compasses, thermometers, wheels and knobs to control or display values, arrays, or ranges of type double.</td>
-<td align="left"><ul>
-<li>6.1.2-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>SpatiaLite</strong><br />
-<a href="https://www.gaia-gis.it/fossil/libspatialite/index" class="uri">https://www.gaia-gis.it/fossil/libspatialite/index</a></td>
-<td align="left">SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities.</td>
-<td align="left"><ul>
-<li>4.3.0a-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libMesh</strong><br />
-<a href="http://libmesh.github.io/" class="uri">http://libmesh.github.io/</a></td>
-<td align="left">The libMesh library provides a framework for the numerical simulation of partial differential equations using arbitrary unstructured discretizations on serial and parallel platforms. A major goal of the library is to provide support for adaptive mesh refinement (AMR) computations in parallel while allowing a research scientist to focus on the physics they are modeling.</td>
-<td align="left"><ul>
-<li>0.9.5-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libdrm</strong><br />
-<a href="http://dri.freedesktop.org" class="uri">http://dri.freedesktop.org</a></td>
-<td align="left">Direct Rendering Manager runtime library.</td>
-<td align="left"><ul>
-<li>2.4.27-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libffi</strong><br />
-<a href="http://sourceware.org/libffi/" class="uri">http://sourceware.org/libffi/</a></td>
-<td align="left">The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.</td>
-<td align="left"><ul>
-<li>3.0.13</li>
-<li>3.0.13-foss-2015b</li>
-<li>3.0.13-foss-2015g</li>
-<li>3.0.13-intel-2015b</li>
-<li>3.1-GNU-5.1.0-2.25</li>
-<li>3.1-foss-2015b</li>
-<li>3.1-intel-2015b</li>
-<li>3.1-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libfontenc</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs/" class="uri">http://www.freedesktop.org/wiki/Software/xlibs/</a></td>
-<td align="left">X11 font encoding library</td>
-<td align="left"><ul>
-<li>1.1.3-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libjpeg-turbo</strong><br />
-<a href="http://sourceforge.net/libjpeg-turbo/" class="uri">http://sourceforge.net/libjpeg-turbo/</a></td>
-<td align="left">libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.</td>
-<td align="left"><ul>
-<li>1.3.1-foss-2015b</li>
-<li>1.3.1-intel-2015b</li>
-<li>1.4.0</li>
-<li>1.4.0-foss-2015g</li>
-<li>1.4.0-intel-2015b</li>
-<li>1.4.1-foss-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libmatheval</strong><br />
-<a href="http://www.gnu.org/software/libmatheval/" class="uri">http://www.gnu.org/software/libmatheval/</a></td>
-<td align="left">GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.</td>
-<td align="left"><ul>
-<li>1.1.8-foss-2015b</li>
-<li>1.1.8-foss-2015g</li>
-<li>1.1.8-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libpng</strong><br />
-<a href="http://www.libpng.org/pub/png/libpng.html" class="uri">http://www.libpng.org/pub/png/libpng.html</a></td>
-<td align="left">libpng is the official PNG reference library</td>
-<td align="left"><ul>
-<li>1.6.12</li>
-<li>1.6.12-foss-2015b</li>
-<li>1.6.12-foss-2015g</li>
-<li>1.6.12-intel-2015b</li>
-<li>1.6.12-intel-2016.01</li>
-<li>1.6.17-foss-2015b</li>
-<li>1.6.21-foss-2015b</li>
-<li>1.6.21-foss-2015g</li>
-<li>1.6.9-ictce-5.5.0</li>
-<li>1.6.9-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libpthread-stubs</strong><br />
-<a href="http://xcb.freedesktop.org/" class="uri">http://xcb.freedesktop.org/</a></td>
-<td align="left">The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.</td>
-<td align="left"><ul>
-<li>0.3</li>
-<li>0.3-foss-2015g</li>
-<li>0.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libreadline</strong><br />
-<a href="http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html" class="uri">http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html</a></td>
-<td align="left">The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.</td>
-<td align="left"><ul>
-<li>6.2-ictce-5.5.0</li>
-<li>6.2-intel-2015b</li>
-<li>6.3</li>
-<li>6.3-GCCcore-4.9.3</li>
-<li>6.3-GNU-4.9.3-2.25</li>
-<li>6.3-GNU-5.1.0-2.25</li>
-<li>6.3-foss-2015b</li>
-<li>6.3-foss-2015g</li>
-<li>6.3-gompi-2015e</li>
-<li>6.3-ictce-7.3.5</li>
-<li>6.3-intel-2015b</li>
-<li>6.3-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libtool</strong><br />
-<a href="http://www.gnu.org/software/libtool" class="uri">http://www.gnu.org/software/libtool</a></td>
-<td align="left">GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.</td>
-<td align="left"><ul>
-<li>2.4.2</li>
-<li>2.4.2-foss-2015b</li>
-<li>2.4.2-foss-2015g</li>
-<li>2.4.2-intel-2015b</li>
-<li>2.4.6</li>
-<li>2.4.6-GCC-4.9.3-2.25</li>
-<li>2.4.6-GNU-4.9.3-2.25</li>
-<li>2.4.6-GNU-5.1.0-2.25</li>
-<li>2.4.6-foss-2015g</li>
-<li>2.4.6-intel-2015b</li>
-<li>2.4.6-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libunistring</strong><br />
-<a href="http://www.gnu.org/software/libunistring/" class="uri">http://www.gnu.org/software/libunistring/</a></td>
-<td align="left">This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.</td>
-<td align="left"><ul>
-<li>0.9.3</li>
-<li>0.9.3-foss-2015b</li>
-<li>0.9.3-foss-2015g</li>
-<li>0.9.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libxcb</strong><br />
-<a href="http://xcb.freedesktop.org/" class="uri">http://xcb.freedesktop.org/</a></td>
-<td align="left">The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.</td>
-<td align="left"><ul>
-<li>1.10-Python-2.7.8</li>
-<li>1.11-Python-2.7.9</li>
-<li>1.11-foss-2015g-Python-2.7.9</li>
-<li>1.11-intel-2015b-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libxml2</strong><br />
-<a href="http://xmlsoft.org/" class="uri">http://xmlsoft.org/</a></td>
-<td align="left">Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).</td>
-<td align="left"><ul>
-<li>2.9.2-GCC-4.9.3-2.25</li>
-<li>2.9.2-GNU-4.9.3-2.25</li>
-<li>2.9.2-GNU-5.1.0-2.25</li>
-<li>2.9.2-foss-2015b</li>
-<li>2.9.2-foss-2015g</li>
-<li>2.9.2-foss-2015g-Python-2.7.9</li>
-<li>2.9.2-gompi-2015e</li>
-<li>2.9.2-ictce-7.3.5</li>
-<li>2.9.2-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>spatialindex</strong><br />
-<a href="https://libspatialindex.github.io/index.html" class="uri">https://libspatialindex.github.io/index.html</a></td>
-<td align="left">The purpose of this library is to provide: * An extensible framework that will support robust spatial indexing methods. * Support for sophisticated spatial queries. Range, point location, nearest neighbor and k-nearest neighbor as well as parametric queries (defined by spatial constraints) should be easy to deploy and run. * Easy to use interfaces for inserting, deleting and updating information.</td>
-<td align="left"><ul>
-<li>1.8.5-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>tbb</strong><br />
-<a href="http://software.intel.com/en-us/articles/intel-tbb/" class="uri">http://software.intel.com/en-us/articles/intel-tbb/</a></td>
-<td align="left">Intel Threading Building Blocks 4.0 (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based parallel applications that scale to available processor cores, are compatible with multiple environments, and are easier to maintain. Intel TBB is the most proficient way to implement future-proof parallel applications that tap into the power and performance of multicore and manycore hardware platforms.</td>
-<td align="left"><ul>
-<li>4.3.5.187</li>
-<li>4.4.2.152</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>zlib</strong><br />
-<a href="http://www.zlib.net/" class="uri">http://www.zlib.net/</a></td>
-<td align="left">zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.</td>
-<td align="left"><ul>
-<li>1.2.7-foss-2015b</li>
-<li>1.2.7-ictce-5.5.0</li>
-<li>1.2.7-intel-2015b</li>
-<li>1.2.8</li>
-<li>1.2.8-GCC-4.9.3-2.25</li>
-<li>1.2.8-GCC-4.9.3-binutils-2.25</li>
-<li>1.2.8-GCC-5.1.0-binutils-2.25</li>
-<li>1.2.8-GCCcore-4.9.3</li>
-<li>1.2.8-GCCcore-5.3.0</li>
-<li>1.2.8-GCCcore-5.3.1-snapshot-20160419</li>
-<li>1.2.8-GNU-4.9.3-2.25</li>
-<li>1.2.8-GNU-5.1.0-2.25</li>
-<li>1.2.8-GNU-5.1.0-2.25-intel-2015b</li>
-<li>1.2.8-foss-2015b</li>
-<li>1.2.8-foss-2015g</li>
-<li>1.2.8-gompi-2015e</li>
-<li>1.2.8-ictce-7.3.5</li>
-<li>1.2.8-intel-2015b</li>
-<li>1.2.8-intel-2016.01</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[math](list_of_modules.html#categories "Go to list of categories...")
--------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>FIAT</strong><br />
-<a href="https://bitbucket.org/fenics-project/fiat" class="uri">https://bitbucket.org/fenics-project/fiat</a></td>
-<td align="left">The FInite element Automatic Tabulator FIAT supports generation of arbitrary order instances of the Lagrange elements on lines, triangles, and tetrahedra. It is also capable of generating arbitrary order instances of Jacobi-type quadrature rules on the same element shapes.</td>
-<td align="left"><ul>
-<li>1.6.0-intel-2015b-Python-2.7.11</li>
-<li>1.6.0-intel-2015b-Python-2.7.9</li>
-<li>1.6.0-intel-2016.01-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>GEOS</strong><br />
-<a href="http://trac.osgeo.org/geos" class="uri">http://trac.osgeo.org/geos</a></td>
-<td align="left">GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)</td>
-<td align="left"><ul>
-<li>3.5.0-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>GMP</strong><br />
-<a href="http://gmplib.org/" class="uri">http://gmplib.org/</a></td>
-<td align="left">GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.</td>
-<td align="left"><ul>
-<li>5.0.5</li>
-<li>5.0.5-foss-2015b</li>
-<li>5.0.5-foss-2015g</li>
-<li>5.0.5-intel-2015b</li>
-<li>6.0.0a-GNU-4.9.3-2.25</li>
-<li>6.0.0a-GNU-5.1.0-2.25</li>
-<li>6.0.0a-foss-2015b</li>
-<li>6.1.0-GCC-4.9.3-2.25</li>
-<li>6.1.0-intel-2015b</li>
-<li>6.1.0-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Harminv</strong><br />
-<a href="http://ab-initio.mit.edu/wiki/index.php/Harminv" class="uri">http://ab-initio.mit.edu/wiki/index.php/Harminv</a></td>
-<td align="left">Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.</td>
-<td align="left"><ul>
-<li>1.4-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>ISL</strong><br />
-<a href="http://isl.gforge.inria.fr/" class="uri">http://isl.gforge.inria.fr/</a></td>
-<td align="left">isl is a library for manipulating sets and relations of integer points bounded by linear constraints.</td>
-<td align="left"><ul>
-<li>0.14-GNU-5.1.0-2.25</li>
-<li>0.15-GCC-4.9.3-2.25</li>
-<li>0.15-GNU-4.9.3-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>METIS</strong><br />
-<a href="http://glaros.dtc.umn.edu/gkhome/metis/metis/overview" class="uri">http://glaros.dtc.umn.edu/gkhome/metis/metis/overview</a></td>
-<td align="left">METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.</td>
-<td align="left"><ul>
-<li>5.1.0-intel-2015b</li>
-<li>5.1.0-intel-2016.01</li>
-<li>5.1.0-intel-2016.01-32bitIDX</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Octave</strong><br />
-<a href="http://www.gnu.org/software/octave/" class="uri">http://www.gnu.org/software/octave/</a></td>
-<td align="left">GNU Octave is a high-level interpreted language, primarily intended for numerical computations.</td>
-<td align="left"><ul>
-<li>3.8.2-foss-2015g</li>
-<li>3.8.2-intel-2015b</li>
-<li>4.0.0-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>ParMETIS</strong><br />
-<a href="http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview" class="uri">http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview</a></td>
-<td align="left">ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.</td>
-<td align="left"><ul>
-<li>4.0.3-intel-2015b</li>
-<li>4.0.3-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>SCOTCH</strong><br />
-<a href="http://gforge.inria.fr/projects/scotch/" class="uri">http://gforge.inria.fr/projects/scotch/</a></td>
-<td align="left">Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.</td>
-<td align="left"><ul>
-<li>5.1.12b_esmumps-foss-2015b</li>
-<li>6.0.0_esmumps-intel-2015b</li>
-<li>6.0.3-intel-2015b</li>
-<li>6.0.3-intel-2016.01</li>
-<li>6.0.4-intel-2015b</li>
-<li>6.0.4-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>ScientificPython</strong><br />
-<a href="https://sourcesup.cru.fr/projects/scientific-py/" class="uri">https://sourcesup.cru.fr/projects/scientific-py/</a></td>
-<td align="left">ScientificPython is a collection of Python modules for scientific computing. It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, and parallelization.</td>
-<td align="left"><ul>
-<li>2.9.4-intel-2015b-Python-2.7.11</li>
-<li>2.9.4-intel-2015b-Python-2.7.9</li>
-<li>2.9.4-intel-2016.01-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>numpy</strong><br />
-<a href="http://www.numpy.org" class="uri">http://www.numpy.org</a></td>
-<td align="left">NumPy is the fundamental package for scientific computing with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.</td>
-<td align="left"><ul>
-<li>1.8.2-intel-2015b-Python-2.7.11</li>
-<li>1.8.2-intel-2015b-Python-2.7.9</li>
-<li>1.8.2-intel-2016.01-Python-2.7.9</li>
-<li>1.9.1-intel-2015b-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>sympy</strong><br />
-<a href="http://sympy.org/" class="uri">http://sympy.org/</a></td>
-<td align="left">SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.</td>
-<td align="left"><ul>
-<li>0.7.6-intel-2015b-Python-2.7.9</li>
-<li>0.7.6-intel-2016.01-Python-2.7.9</li>
-<li>0.7.6.1-intel-2015b-Python-2.7.11</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[mpi](list_of_modules.html#categories "Go to list of categories...")
-------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>MPICH</strong><br />
-<a href="http://www.mpich.org/" class="uri">http://www.mpich.org/</a></td>
-<td align="left">MPICH v3.x is an open source high-performance MPI 3.0 implementation. It does not support InfiniBand (use MVAPICH2 with InfiniBand devices).</td>
-<td align="left"><ul>
-<li>3.2-GCC-5.3.0-2.25</li>
-<li>3.2-GCC-5.3.1-snapshot-20160419-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>MPI_NET</strong><br />
-<a href="http://www.osl.iu.edu/research/mpi.net/" class="uri">http://www.osl.iu.edu/research/mpi.net/</a></td>
-<td align="left">MPI.NET is a high-performance, easy-to-use implementation of the Message Passing Interface (MPI) for Microsoft's .NET environment</td>
-<td align="left"><ul>
-<li>1.2.0-gompi-2015e</li>
-<li>1.2.0-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>MVAPICH2</strong><br />
-<a href="http://mvapich.cse.ohio-state.edu/overview/mvapich2/" class="uri">http://mvapich.cse.ohio-state.edu/overview/mvapich2/</a></td>
-<td align="left">This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH.</td>
-<td align="left"><ul>
-<li>2.1-GCC-4.4.7-system</li>
-<li>2.1-GNU-5.1.0-2.25</li>
-<li>2.1-iccifort-2015.3.187-GNU-5.1.0-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>OpenMPI</strong><br />
-<a href="http://www.open-mpi.org/" class="uri">http://www.open-mpi.org/</a></td>
-<td align="left">The Open MPI Project is an open source MPI-2 implementation.</td>
-<td align="left"><ul>
-<li>1.10.1-GNU-4.9.3-2.25</li>
-<li>1.10.2-GCC-5.3.0-2.26</li>
-<li>1.8.6-GCC-4.4.7-system</li>
-<li>1.8.6-GNU-5.1.0-2.25</li>
-<li>1.8.6-iccifort-2015.3.187-GNU-5.1.0-2.25</li>
-<li>1.8.8-GNU-4.9.3-2.25</li>
-<li>1.8.8-GNU-5.1.0-2.25</li>
-<li>1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>impi</strong><br />
-<a href="http://software.intel.com/en-us/intel-mpi-library/" class="uri">http://software.intel.com/en-us/intel-mpi-library/</a></td>
-<td align="left">The Intel(R) MPI Library for Linux* OS is a multi-fabric message passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.</td>
-<td align="left"><ul>
-<li>2017-BETA.ENG</li>
-<li>4.1.1.036-iccifort-2013.5.192</li>
-<li>4.1.1.036-iccifort-2013.5.192-GCC-4.8.3</li>
-<li>5.0.3.048</li>
-<li>5.0.3.048-iccifort-2015.3.187</li>
-<li>5.0.3.048-iccifort-2015.3.187-GNU-5.1.0-2.25</li>
-<li>5.1.1.109-iccifort-2016.0.109-GCC-4.9.3</li>
-<li>5.1.2.150-iccifort-2016.1.150</li>
-<li>5.1.2.150-iccifort-2016.1.150-GCC-4.9.3</li>
-<li>5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25</li>
-<li>5.1.3.181-iccifort-2016.3.210-GCC-5.3.0-2.26</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>mpt</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>2.12</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[numlib](list_of_modules.html#categories "Go to list of categories...")
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-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>FFTW</strong><br />
-<a href="http://www.fftw.org" class="uri">http://www.fftw.org</a></td>
-<td align="left">FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.</td>
-<td align="left"><ul>
-<li>2.1.5-gompi-2015b</li>
-<li>2.1.5-iimpi-7.3.5-GNU-5.1.0-2.25</li>
-<li>3.3.4-gompi-2015b</li>
-<li>3.3.4-gompi-2015e</li>
-<li>3.3.4-gompi-2015g</li>
-<li>3.3.4-gompi-2016.04</li>
-<li>3.3.4-intel-2015b</li>
-<li>3.3.4-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>GSL</strong><br />
-<a href="http://www.gnu.org/software/gsl/" class="uri">http://www.gnu.org/software/gsl/</a></td>
-<td align="left">The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.</td>
-<td align="left"><ul>
-<li>1.16-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Hypre</strong><br />
-<a href="https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html" class="uri">https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html</a></td>
-<td align="left">Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.</td>
-<td align="left"><ul>
-<li>2.10.0b-intel-2015b</li>
-<li>2.10.0b-intel-2016.01</li>
-<li>2.10.1-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>LAPACKE</strong><br />
-<a href="http://www.netlib.org/lapack/lapacke.html" class="uri">http://www.netlib.org/lapack/lapacke.html</a></td>
-<td align="left">LAPACKE C Interface to LAPACK header files and library</td>
-<td align="left"><ul>
-<li>3.5.0-LAPACK-3.5.0</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>OpenBLAS</strong><br />
-<a href="http://xianyi.github.com/OpenBLAS/" class="uri">http://xianyi.github.com/OpenBLAS/</a></td>
-<td align="left">OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.</td>
-<td align="left"><ul>
-<li>0.2.14-GNU-4.9.3-2.25-LAPACK-3.5.0</li>
-<li>0.2.14-GNU-5.1.0-2.25-LAPACK-3.5.0</li>
-<li>0.2.14-LAPACK-3.5.0</li>
-<li>0.2.14-gompi-2015e-LAPACK-3.5.0</li>
-<li>0.2.18-GCC-5.3.0-2.26-LAPACK-3.6.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>PETSc</strong><br />
-<a href="http://www.mcs.anl.gov/petsc" class="uri">http://www.mcs.anl.gov/petsc</a></td>
-<td align="left">PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.</td>
-<td align="left"><ul>
-<li>3.6.1-intel-2015b-Python-2.7.9</li>
-<li>3.6.1-intel-2016.01-Python-2.7.9</li>
-<li>3.6.3-intel-2015b-Python-2.7.11</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>ScaLAPACK</strong><br />
-<a href="http://www.netlib.org/scalapack/" class="uri">http://www.netlib.org/scalapack/</a></td>
-<td align="left">The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.</td>
-<td align="left"><ul>
-<li>2.0.2-OpenBLAS-0.2.14-LAPACK-3.5.0</li>
-<li>2.0.2-gompi-2015b-OpenBLAS-0.2.14-LAPACK-3.5.0</li>
-<li>2.0.2-gompi-2015e-OpenBLAS-0.2.14-LAPACK-3.5.0</li>
-<li>2.0.2-gompi-2015g-OpenBLAS-0.2.14-LAPACK-3.5.0</li>
-<li>2.0.2-gompi-2016.04-OpenBLAS-0.2.18-LAPACK-3.6.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>SuiteSparse</strong><br />
-<a href="http://www.cise.ufl.edu/research/sparse/SuiteSparse/" class="uri">http://www.cise.ufl.edu/research/sparse/SuiteSparse/</a></td>
-<td align="left">SuiteSparse is a collection of libraries manipulate sparse matrices.</td>
-<td align="left"><ul>
-<li>4.4.3-intel-2015b-ParMETIS-4.0.3</li>
-<li>4.4.3-intel-2016.01-ParMETIS-4.0.3</li>
-<li>4.4.6-intel-2015b-ParMETIS-4.0.3</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>arpack-ng</strong><br />
-<a href="http://forge.scilab.org/index.php/p/arpack-ng/" class="uri">http://forge.scilab.org/index.php/p/arpack-ng/</a></td>
-<td align="left">ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.</td>
-<td align="left"><ul>
-<li>3.3.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>imkl</strong><br />
-<a href="http://software.intel.com/en-us/intel-mkl/" class="uri">http://software.intel.com/en-us/intel-mkl/</a></td>
-<td align="left">Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.</td>
-<td align="left"><ul>
-<li>11.0.5.192-iimpi-5.5.0</li>
-<li>11.0.5.192-iimpi-5.5.0-GCC-4.8.3</li>
-<li>11.2.3.187</li>
-<li>11.2.3.187-iimpi-7.3.5</li>
-<li>11.2.3.187-iimpi-7.3.5-GNU-5.1.0-2.25</li>
-<li>11.2.3.187-iompi-2015.03</li>
-<li>11.3.0.109-iimpi-2016.00-GCC-4.9.3</li>
-<li>11.3.1.150-iimpi-2016.00-GCC-4.9.3</li>
-<li>11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25</li>
-<li>11.3.1.150-iimpi-8.3.5</li>
-<li>11.3.3.210-iimpi-2016.03-GCC-5.3.0-2.26</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[perf](list_of_modules.html#categories "Go to list of categories...")
--------------------------------------------------------------------------------
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-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>Advisor</strong><br />
-<a href="https://software.intel.com/intel-advisor-xe" class="uri">https://software.intel.com/intel-advisor-xe</a></td>
-<td align="left">Vectorization Optimization and Thread Prototyping - Vectorize &amp; thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype &amp; Predict performance gain</td>
-<td align="left"><ul>
-<li>2016_update2</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>MAP</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>4.2</li>
-<li>5.0.1</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>OPARI2</strong><br />
-<a href="http://www.score-p.org" class="uri">http://www.score-p.org</a></td>
-<td align="left">OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.</td>
-<td align="left"><ul>
-<li>1.1.4-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>OTF2</strong><br />
-<a href="http://www.score-p.org" class="uri">http://www.score-p.org</a></td>
-<td align="left">The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It will become the new standard trace format for Scalasca, Vampir, and Tau and is open for other tools.</td>
-<td align="left"><ul>
-<li>1.4-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>PAPI</strong><br />
-<a href="http://icl.cs.utk.edu/projects/papi/" class="uri">http://icl.cs.utk.edu/projects/papi/</a></td>
-<td align="left">PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.</td>
-<td align="left"><ul>
-<li>5.4.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>PerfReports</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>5.0.1</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Vampir</strong><br />
-<a href="http://www.vampir.eu" class="uri">http://www.vampir.eu</a></td>
-<td align="left">The Vampir software tool provides an easy-to-use framework that enables developers to quickly display and analyze arbitrary program behavior at any level of detail. The tool suite implements optimized event analysis algorithms and customizable displays that enable fast and interactive rendering of very complex performance monitoring data.</td>
-<td align="left"><ul>
-<li>8.5.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>ipp</strong><br />
-<a href="http://software.intel.com/en-us/articles/intel-ipp/" class="uri">http://software.intel.com/en-us/articles/intel-ipp/</a></td>
-<td align="left">Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms.</td>
-<td align="left"><ul>
-<li>9.0.1.150</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>perfboost</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>1.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>perfcatcher</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>1.0</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>perfsuite</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>1a5.3</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[phys](list_of_modules.html#categories "Go to list of categories...")
--------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>Meep</strong><br />
-<a href="http://ab-initio.mit.edu/wiki/index.php/Meep" class="uri">http://ab-initio.mit.edu/wiki/index.php/Meep</a></td>
-<td align="left">Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.</td>
-<td align="left"><ul>
-<li>1.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>phono3py</strong><br />
-<a href="http://phonopy.sourceforge.net/phono3py/index.html" class="uri">http://phonopy.sourceforge.net/phono3py/index.html</a></td>
-<td align="left">This software calculates phonon-phonon interaction related properties</td>
-<td align="left"><ul>
-<li>0.9.14-ictce-7.3.5-Python-2.7.9</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[system](list_of_modules.html#categories "Go to list of categories...")
----------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>hwloc</strong><br />
-<a href="http://www.open-mpi.org/projects/hwloc/" class="uri">http://www.open-mpi.org/projects/hwloc/</a></td>
-<td align="left">The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.</td>
-<td align="left"><ul>
-<li>1.11.0-GNU-4.9.3-2.25</li>
-<li>1.11.0-GNU-5.1.0-2.25</li>
-<li>1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25</li>
-<li>1.11.2-GCC-4.9.3-2.25</li>
-<li>1.11.3-GCC-5.3.0-2.26</li>
-<li>1.5-GCC-4.4.7-system</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libpciaccess</strong><br />
-<a href="http://cgit.freedesktop.org/xorg/lib/libpciaccess/" class="uri">http://cgit.freedesktop.org/xorg/lib/libpciaccess/</a></td>
-<td align="left">Generic PCI access library.</td>
-<td align="left"><ul>
-<li>0.13.1-foss-2015g</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[toolchain](list_of_modules.html#categories "Go to list of categories...")
-------------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>GNU</strong><br />
-<a href="http://www.gnu.org/software/" class="uri">http://www.gnu.org/software/</a></td>
-<td align="left">Compiler-only toolchain with GCC and binutils.</td>
-<td align="left"><ul>
-<li>4.9.3-2.25</li>
-<li>5.1.0-2.25</li>
-<li>5.1.0-2.25-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>PRACE</strong><br />
-<a href="http://www.prace-ri.eu/PRACE-Common-Production" class="uri">http://www.prace-ri.eu/PRACE-Common-Production</a></td>
-<td align="left">The PRACE Common Production Environment (PCPE) is a set of software tools and libraries that are planned to be available on all PRACE execution sites. The PCPE also defines a set of environment variables that try to make compilation on all sites as homogeneous and simple as possible.</td>
-<td align="left"><ul>
-<li>20150630-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>foss</strong><br />
-<a href="https://docs.it4i.cz/salomon/(none)">(none)</a></td>
-<td align="left">GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.</td>
-<td align="left"><ul>
-<li>2015b</li>
-<li>2015e</li>
-<li>2015g</li>
-<li>2016.04</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>gompi</strong><br />
-<a href="https://docs.it4i.cz/salomon/(none)">(none)</a></td>
-<td align="left">GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.</td>
-<td align="left"><ul>
-<li>2015b</li>
-<li>2015e</li>
-<li>2015g</li>
-<li>2016.04</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>iccifort</strong><br />
-<a href="http://software.intel.com/en-us/intel-cluster-toolkit-compiler/" class="uri">http://software.intel.com/en-us/intel-cluster-toolkit-compiler/</a></td>
-<td align="left">Intel C, C++ and Fortran compilers</td>
-<td align="left"><ul>
-<li>2013.5.192</li>
-<li>2013.5.192-GCC-4.8.3</li>
-<li>2015.3.187</li>
-<li>2015.3.187-GNU-4.9.3-2.25</li>
-<li>2015.3.187-GNU-5.1.0-2.25</li>
-<li>2016.0.109-GCC-4.9.3</li>
-<li>2016.1.150</li>
-<li>2016.1.150-GCC-4.9.3</li>
-<li>2016.1.150-GCC-4.9.3-2.25</li>
-<li>2016.3.210-GCC-5.3.0-2.26</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>ictce</strong><br />
-<a href="http://software.intel.com/en-us/intel-cluster-toolkit-compiler/" class="uri">http://software.intel.com/en-us/intel-cluster-toolkit-compiler/</a></td>
-<td align="left">Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI &amp; Intel MKL.</td>
-<td align="left"><ul>
-<li>5.5.0</li>
-<li>7.3.5</li>
-<li>8.3.5</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>iimpi</strong><br />
-<a href="http://software.intel.com/en-us/intel-cluster-toolkit-compiler/" class="uri">http://software.intel.com/en-us/intel-cluster-toolkit-compiler/</a></td>
-<td align="left">Intel C/C++ and Fortran compilers, alongside Intel MPI.</td>
-<td align="left"><ul>
-<li>2016.00-GCC-4.9.3</li>
-<li>2016.01-GCC-4.9.3</li>
-<li>2016.01-GCC-4.9.3-2.25</li>
-<li>2016.03-GCC-5.3.0-2.26</li>
-<li>5.5.0</li>
-<li>5.5.0-GCC-4.8.3</li>
-<li>7.3.5</li>
-<li>7.3.5-GNU-5.1.0-2.25</li>
-<li>8.3.5</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>intel</strong><br />
-<a href="http://software.intel.com/en-us/intel-cluster-toolkit-compiler/" class="uri">http://software.intel.com/en-us/intel-cluster-toolkit-compiler/</a></td>
-<td align="left">Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI &amp; Intel MKL.</td>
-<td align="left"><ul>
-<li>2014.06</li>
-<li>2015b</li>
-<li>2015b-intel-2015b</li>
-<li>2016.00</li>
-<li>2016.01</li>
-<li>2016.03-GCC-5.3</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>prace</strong><br />
-<a href="http://www.prace-ri.eu/PRACE-Common-Production" class="uri">http://www.prace-ri.eu/PRACE-Common-Production</a></td>
-<td align="left">**** PRACE Common Production Environment (PCPE) **** Initialisation of the PRACE common production environment. This allows you to assume that the following tools/libraries are available by default in your PATH/environment. * Fortran, C, C++ Compilers * MPI * BLAS, LAPACK, BLACS, ScaLAPACK * FFTW * HDF5, NetCDF The compiler commands on are: * mpif90 - Fortran compiler * mpicc - C compiler * mpicxx - C++ compiler For more information on the PCPE please see the documentation at: http://www.prace-ri.eu/PRACE-Common-Production For help using this system, please see Local User Guide available at: http://prace-ri.eu/Best-Practice-Guide-Anselm-HTML</td>
-<td align="left"><ul>
-<li>20160107-intel-2016.01</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[tools](list_of_modules.html#categories "Go to list of categories...")
---------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>APR</strong><br />
-<a href="http://apr.apache.org/" class="uri">http://apr.apache.org/</a></td>
-<td align="left">Apache Portable Runtime (APR) libraries.</td>
-<td align="left"><ul>
-<li>1.5.2-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>APR-util</strong><br />
-<a href="http://apr.apache.org/" class="uri">http://apr.apache.org/</a></td>
-<td align="left">Apache Portable Runtime (APR) util libraries.</td>
-<td align="left"><ul>
-<li>1.5.4-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Bash</strong><br />
-<a href="http://www.gnu.org/software/bash" class="uri">http://www.gnu.org/software/bash</a></td>
-<td align="left">Bash is an sh-compatible command language interpreter that executes commands read from the standard input or from a file. Bash also incorporates useful features from the Korn and C shells (ksh and csh).</td>
-<td align="left"><ul>
-<li>4.2-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>EasyBuild</strong><br />
-<a href="http://hpcugent.github.com/easybuild/" class="uri">http://hpcugent.github.com/easybuild/</a></td>
-<td align="left">EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.</td>
-<td align="left"><ul>
-<li>2.4.0</li>
-<li>2.5.0</li>
-<li>2.7.0</li>
-<li>2.8.0</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>HPL</strong><br />
-<a href="http://www.netlib.org/benchmark/hpl/" class="uri">http://www.netlib.org/benchmark/hpl/</a></td>
-<td align="left">HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.</td>
-<td align="left"><ul>
-<li>2.1-foss-2015b</li>
-<li>2.1-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Inspector</strong><br />
-<a href="http://software.intel.com/en-us/intel-inspector-xe" class="uri">http://software.intel.com/en-us/intel-inspector-xe</a></td>
-<td align="left">Intel Inspector XE 2013 is an easy to use memory error checker and thread checker for serial and parallel applications</td>
-<td align="left"><ul>
-<li>2016_update1</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>JOE</strong><br />
-<a href="http://joe-editor.sourceforge.net" class="uri">http://joe-editor.sourceforge.net</a></td>
-<td align="left">JOE is a full featured terminal-based screen editor which is distributed under the GNU General Public License (GPL)</td>
-<td align="left"><ul>
-<li>4.2</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>MATLAB</strong><br />
-<a href="index.html"></a></td>
-<td align="left"></td>
-<td align="left"><ul>
-<li>2015a-COM</li>
-<li>2015a-EDU</li>
-<li>2015b-COM</li>
-<li>2015b-EDU</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>MIKE</strong><br />
-<a href="http://www.mikepoweredbydhi.com" class="uri">http://www.mikepoweredbydhi.com</a></td>
-<td align="left">MIKE Powered by DHI is a part of DHI, the global organisation dedicated to solving challenges in water environments worldwide.</td>
-<td align="left"><ul>
-<li>2014</li>
-<li>2016</li>
-<li>2016-SP2</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Mercurial</strong><br />
-<a href="http://mercurial.selenic.com/" class="uri">http://mercurial.selenic.com/</a></td>
-<td align="left">Mercurial is a free, distributed source control management tool. It efficiently handles projects of any size and offers an easy and intuitive interface.</td>
-<td align="left"><ul>
-<li>3.5-Python-2.7.9</li>
-<li>3.7.3-foss-2015g-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>QEMU</strong><br />
-<a href="http://wiki.qemu.org/Main_Page" class="uri">http://wiki.qemu.org/Main_Page</a></td>
-<td align="left">QEMU is a generic and open source machine emulator and virtualizer.</td>
-<td align="left"><ul>
-<li>2.1.2-GCC-4.4.7-system</li>
-<li>2.1.2-GCC-4.4.7-system-VDE2</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>SDE</strong><br />
-<a href="https://software.intel.com/en-us/articles/intel-software-development-emulator" class="uri">https://software.intel.com/en-us/articles/intel-software-development-emulator</a></td>
-<td align="left">Intel Software Development Emulator is a pintool that enables the development of applications using instruction set extensions that are not currently implemented in hardware.</td>
-<td align="left"><ul>
-<li>7.41.0</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Serf</strong><br />
-<a href="http://serf.apache.org/" class="uri">http://serf.apache.org/</a></td>
-<td align="left">The serf library is a high performance C-based HTTP client library built upon the Apache Portable Runtime (APR) library</td>
-<td align="left"><ul>
-<li>1.3.8-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Subversion</strong><br />
-<a href="http://subversion.apache.org/" class="uri">http://subversion.apache.org/</a></td>
-<td align="left">Subversion is an open source version control system.</td>
-<td align="left"><ul>
-<li>1.8.16-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Szip</strong><br />
-<a href="http://www.hdfgroup.org/doc_resource/SZIP/" class="uri">http://www.hdfgroup.org/doc_resource/SZIP/</a></td>
-<td align="left">Szip compression software, providing lossless compression of scientific data</td>
-<td align="left"><ul>
-<li>2.1</li>
-<li>2.1-foss-2015b</li>
-<li>2.1-foss-2015g</li>
-<li>2.1-ictce-7.3.5</li>
-<li>2.1-intel-2015b</li>
-<li>2.1-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>VDE2</strong><br />
-<a href="http://vde.sourceforge.net" class="uri">http://vde.sourceforge.net</a></td>
-<td align="left">VDE is an ethernet compliant virtual network that can be spawned over a set of physical computer over the Internet. VDE is part of virtualsquare project.</td>
-<td align="left"><ul>
-<li>2.3.2-GCC-4.4.7-system</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>VTune</strong><br />
-<a href="http://software.intel.com/en-us/intel-vtune-amplifier-xe" class="uri">http://software.intel.com/en-us/intel-vtune-amplifier-xe</a></td>
-<td align="left">Intel VTune Amplifier XE 2016 is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.</td>
-<td align="left"><ul>
-<li>2016_update1</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>VirtualGL</strong><br />
-<a href="http://www.virtualgl.org" class="uri">http://www.virtualgl.org</a></td>
-<td align="left">VirtualGL is an open source toolkit that gives any Unix or Linux remote display software the ability to run OpenGL applications with full 3D hardware acceleration.</td>
-<td align="left"><ul>
-<li>2.4.1</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Wine</strong><br />
-<a href="https://www.winehq.org" class="uri">https://www.winehq.org</a></td>
-<td align="left">Wine (originally an acronym for &quot;Wine Is Not an Emulator&quot;) is a compatibility layer capable of running Windows applications on several POSIX-compliant operating systems, such as Linux, Mac OSX, &amp; BSD.</td>
-<td align="left"><ul>
-<li>1.7.29-GCC-4.4.7-system</li>
-<li>1.7.29-GNU-5.1.0-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>XZ</strong><br />
-<a href="http://tukaani.org/xz/" class="uri">http://tukaani.org/xz/</a></td>
-<td align="left">xz: XZ utilities</td>
-<td align="left"><ul>
-<li>5.2.2-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>binutils</strong><br />
-<a href="http://directory.fsf.org/project/binutils/" class="uri">http://directory.fsf.org/project/binutils/</a></td>
-<td align="left">binutils: GNU binary utilities</td>
-<td align="left"><ul>
-<li>2.25</li>
-<li>2.25-GCC-4.9.3-binutils-2.25</li>
-<li>2.25-GCC-5.1.0-binutils-2.25</li>
-<li>2.25-GCCcore-4.9.3</li>
-<li>2.25-GCCcore-5.3.0</li>
-<li>2.25-GCCcore-5.3.1-snapshot-20160419</li>
-<li>2.25-foss-2015b</li>
-<li>2.26</li>
-<li>2.26-GCCcore-5.3.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>bzip2</strong><br />
-<a href="http://www.bzip.org/" class="uri">http://www.bzip.org/</a></td>
-<td align="left">bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.</td>
-<td align="left"><ul>
-<li>1.0.6</li>
-<li>1.0.6-GCC-4.9.3-2.25</li>
-<li>1.0.6-GNU-4.9.3-2.25</li>
-<li>1.0.6-GNU-5.1.0-2.25</li>
-<li>1.0.6-foss-2015b</li>
-<li>1.0.6-foss-2015g</li>
-<li>1.0.6-gompi-2015e</li>
-<li>1.0.6-ictce-7.3.5</li>
-<li>1.0.6-intel-2015b</li>
-<li>1.0.6-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>cURL</strong><br />
-<a href="http://curl.haxx.se" class="uri">http://curl.haxx.se</a></td>
-<td align="left">libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.</td>
-<td align="left"><ul>
-<li>7.37.1</li>
-<li>7.37.1-foss-2015g</li>
-<li>7.37.1-intel-2015b</li>
-<li>7.37.1-intel-2016.01</li>
-<li>7.45.0-foss-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>expat</strong><br />
-<a href="http://expat.sourceforge.net/" class="uri">http://expat.sourceforge.net/</a></td>
-<td align="left">Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags)</td>
-<td align="left"><ul>
-<li>2.1.0</li>
-<li>2.1.0-foss-2015b</li>
-<li>2.1.0-foss-2015g</li>
-<li>2.1.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>git</strong><br />
-<a href="http://git-scm.com/" class="uri">http://git-scm.com/</a></td>
-<td align="left">Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.</td>
-<td align="left"><ul>
-<li>2.8.0</li>
-<li>2.8.0-GNU-4.9.3-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>gzip</strong><br />
-<a href="http://www.gnu.org/software/gzip/" class="uri">http://www.gnu.org/software/gzip/</a></td>
-<td align="left">gzip (GNU zip) is a popular data compression program as a replacement for compress</td>
-<td align="left"><ul>
-<li>1.6-foss-2015g</li>
-<li>1.6-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>itac</strong><br />
-<a href="http://software.intel.com/en-us/intel-trace-analyzer/" class="uri">http://software.intel.com/en-us/intel-trace-analyzer/</a></td>
-<td align="left">The Intel Trace Collector is a low-overhead tracing library that performs event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application activities gathered by the Intel Trace Collector through graphical displays.</td>
-<td align="left"><ul>
-<li>9.1.2.024</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>numactl</strong><br />
-<a href="http://oss.sgi.com/projects/libnuma/" class="uri">http://oss.sgi.com/projects/libnuma/</a></td>
-<td align="left">The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.</td>
-<td align="left"><ul>
-<li>2.0.10-GNU-4.9.3-2.25</li>
-<li>2.0.10-GNU-5.1.0-2.25</li>
-<li>2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25</li>
-<li>2.0.11</li>
-<li>2.0.11-GCC-4.9.3-2.25</li>
-<li>2.0.11-GCC-5.3.0-2.26</li>
-<li>2.0.9-GCC-4.4.7-system</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>parallel</strong><br />
-<a href="http://savannah.gnu.org/projects/parallel/" class="uri">http://savannah.gnu.org/projects/parallel/</a></td>
-<td align="left">parallel: Build and execute shell commands in parallel</td>
-<td align="left"><ul>
-<li>20150322-GNU-5.1.0-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>tcsh</strong><br />
-<a href="http://www.tcsh.org" class="uri">http://www.tcsh.org</a></td>
-<td align="left">Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.</td>
-<td align="left"><ul>
-<li>6.18.01-intel-2015b</li>
-<li>6.19.00</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>turbovnc</strong><br />
-<a href="http://www.turbovnc.org" class="uri">http://www.turbovnc.org</a></td>
-<td align="left">TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.</td>
-<td align="left"><ul>
-<li>1.2.3</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>util-linux</strong><br />
-<a href="http://www.kernel.org/pub/linux/utils/util-linux" class="uri">http://www.kernel.org/pub/linux/utils/util-linux</a></td>
-<td align="left">Set of Linux utilities</td>
-<td align="left"><ul>
-<li>2.26.1</li>
-<li>2.26.1-foss-2015g</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-[vis](list_of_modules.html#categories "Go to list of categories...")
-------------------------------------------------------------------------------
-
-<table>
-<colgroup>
-<col width="33%" />
-<col width="33%" />
-<col width="33%" />
-</colgroup>
-<thead>
-<tr class="header">
-<th align="left">Module</th>
-<th align="left">Description</th>
-<th align="left">Available versions</th>
-</tr>
-</thead>
-<tbody>
-<tr class="odd">
-<td align="left"><strong>FLTK</strong><br />
-<a href="http://www.fltk.org" class="uri">http://www.fltk.org</a></td>
-<td align="left">FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.</td>
-<td align="left"><ul>
-<li>1.3.2-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>GLib</strong><br />
-<a href="http://www.gtk.org/" class="uri">http://www.gtk.org/</a></td>
-<td align="left">GLib is one of the base libraries of the GTK+ project</td>
-<td align="left"><ul>
-<li>2.40.0</li>
-<li>2.40.0-foss-2015g</li>
-<li>2.40.0-intel-2015b</li>
-<li>2.40.0-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>GPI-2</strong><br />
-<a href="http://www.gpi-site.com/gpi2/" class="uri">http://www.gpi-site.com/gpi2/</a></td>
-<td align="left">GPI-2 is an API for the development of scalable, asynchronous and fault tolerant parallel applications.</td>
-<td align="left"><ul>
-<li>1.1.1-gompi-2015e</li>
-<li>1.1.1-gompi-2015e-MPI</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>JasPer</strong><br />
-<a href="http://www.ece.uvic.ca/~frodo/jasper/" class="uri">http://www.ece.uvic.ca/~frodo/jasper/</a></td>
-<td align="left">The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.</td>
-<td align="left"><ul>
-<li>1.900.1-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>Mesa</strong><br />
-<a href="http://www.mesa3d.org/" class="uri">http://www.mesa3d.org/</a></td>
-<td align="left">Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.</td>
-<td align="left"><ul>
-<li>11.0.8-foss-2015g-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>OSPRay</strong><br />
-<a href="http://www.ospray.org" class="uri">http://www.ospray.org</a></td>
-<td align="left">A Ray Tracing Based Rendering Engine for High-Fidelity Visualization</td>
-<td align="left"><ul>
-<li>0.9.1</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>OpenCV</strong><br />
-<a href="http://opencv.org/" class="uri">http://opencv.org/</a></td>
-<td align="left">OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products.</td>
-<td align="left"><ul>
-<li>2.4.9-intel-2015b</li>
-<li>3.0.0-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>OpenDX</strong><br />
-<a href="http://www.opendx.org" class="uri">http://www.opendx.org</a></td>
-<td align="left">Open source visualization software package based on IBM's Visualization Data Explorer.</td>
-<td align="left"><ul>
-<li>4.4.4-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>ParaView</strong><br />
-<a href="http://www.paraview.org" class="uri">http://www.paraview.org</a></td>
-<td align="left">ParaView is a scientific parallel visualizer.</td>
-<td align="left"><ul>
-<li>4.3-OSPRay</li>
-<li>5.0.0-binary</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>PyQt</strong><br />
-<a href="http://www.riverbankcomputing.co.uk/software/pyqt" class="uri">http://www.riverbankcomputing.co.uk/software/pyqt</a></td>
-<td align="left">PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.</td>
-<td align="left"><ul>
-<li>4.11.3-foss-2015g-Python-2.7.9</li>
-<li>4.11.4-foss-2015g-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>SUMO</strong><br />
-<a href="http://www.sumo.dlr.de/wiki/Main_Page" class="uri">http://www.sumo.dlr.de/wiki/Main_Page</a></td>
-<td align="left">Simulation of Urban MObility (SUMO) is an open source, highly portable, microscopic and continuous road traffic simulation package designed to handle large road networks.</td>
-<td align="left"><ul>
-<li>0.25.0-foss-2015g</li>
-<li>0.26.0-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>Tk</strong><br />
-<a href="http://www.tcl.tk/" class="uri">http://www.tcl.tk/</a></td>
-<td align="left">Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.</td>
-<td align="left"><ul>
-<li>8.5.12-intel-2015b</li>
-<li>8.6.4-GCC-4.9.3-2.25-no-X11</li>
-<li>8.6.4-GNU-4.9.3-2.25-no-X11</li>
-<li>8.6.4-foss-2015b-no-X11</li>
-<li>8.6.4-foss-2015g-no-X11</li>
-<li>8.6.4-intel-2015b-no-X11</li>
-<li>8.6.4-intel-2016.01-no-X11</li>
-<li>8.6.4-no-X11</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>VisIt</strong><br />
-<a href="https://wci.llnl.gov/simulation/computer-codes/visit" class="uri">https://wci.llnl.gov/simulation/computer-codes/visit</a></td>
-<td align="left">VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool</td>
-<td align="left"><ul>
-<li>2.10.0</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>cairo</strong><br />
-<a href="http://cairographics.org" class="uri">http://cairographics.org</a></td>
-<td align="left">Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB</td>
-<td align="left"><ul>
-<li>1.12.18-foss-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>ffmpeg</strong><br />
-<a href="https://www.ffmpeg.org/" class="uri">https://www.ffmpeg.org/</a></td>
-<td align="left">A complete, cross-platform solution to record, convert and stream audio and video.</td>
-<td align="left"><ul>
-<li>2.4-foss-2015g</li>
-<li>2.4-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>fixesproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X.org FixesProto protocol headers.</td>
-<td align="left"><ul>
-<li>5.0-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>fontconfig</strong><br />
-<a href="http://www.freedesktop.org/software/fontconfig" class="uri">http://www.freedesktop.org/software/fontconfig</a></td>
-<td align="left">Fontconfig is a library designed to provide system-wide font configuration, customization and application access.</td>
-<td align="left"><ul>
-<li>2.11.1-foss-2015b</li>
-<li>2.11.1-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>freetype</strong><br />
-<a href="http://freetype.org" class="uri">http://freetype.org</a></td>
-<td align="left">FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.</td>
-<td align="left"><ul>
-<li>2.5.3</li>
-<li>2.5.3-foss-2015b</li>
-<li>2.5.3-foss-2015g</li>
-<li>2.5.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>gettext</strong><br />
-<a href="http://www.gnu.org/software/gettext/" class="uri">http://www.gnu.org/software/gettext/</a></td>
-<td align="left">GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation</td>
-<td align="left"><ul>
-<li>0.19.2</li>
-<li>0.19.2-GNU-5.1.0-2.25</li>
-<li>0.19.2-foss-2015b</li>
-<li>0.19.2-foss-2015g</li>
-<li>0.19.2-intel-2015b</li>
-<li>0.19.2-intel-2016.01</li>
-<li>0.19.6-foss-2015g</li>
-<li>0.19.6-intel-2016.01</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>grace</strong><br />
-<a href="http://freecode.com/projects/grace" class="uri">http://freecode.com/projects/grace</a></td>
-<td align="left">Grace is a WYSIWYG 2D plotting tool for X Windows System and Motif.</td>
-<td align="left"><ul>
-<li>5.1.25-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>inputproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X.org InputProto protocol headers.</td>
-<td align="left"><ul>
-<li>2.3</li>
-<li>2.3-foss-2015g</li>
-<li>2.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>kbproto</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X.org KBProto protocol headers.</td>
-<td align="left"><ul>
-<li>1.0.6</li>
-<li>1.0.6-foss-2015g</li>
-<li>1.0.6-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libGLU</strong><br />
-<a href="ftp://ftp.freedesktop.org/pub/mesa/glu/" class="uri">ftp://ftp.freedesktop.org/pub/mesa/glu/</a></td>
-<td align="left">The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.</td>
-<td align="left"><ul>
-<li>9.0.0-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libICE</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X Inter-Client Exchange library for freedesktop.org</td>
-<td align="left"><ul>
-<li>1.0.9</li>
-<li>1.0.9-foss-2015g</li>
-<li>1.0.9-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libX11</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X11 client-side library</td>
-<td align="left"><ul>
-<li>1.6.2-Python-2.7.8</li>
-<li>1.6.2-Python-2.7.9</li>
-<li>1.6.2-foss-2015g-Python-2.7.9</li>
-<li>1.6.2-intel-2015b-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libXau</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">The libXau package contains a library implementing the X11 Authorization Protocol. This is useful for restricting client access to the display.</td>
-<td align="left"><ul>
-<li>1.0.8</li>
-<li>1.0.8-foss-2015g</li>
-<li>1.0.8-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libXdamage</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X Damage extension library</td>
-<td align="left"><ul>
-<li>1.1.4-foss-2015g-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libXdmcp</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is useful for allowing clients to interact with the X Display Manager.</td>
-<td align="left"><ul>
-<li>1.1.2</li>
-<li>1.1.2-foss-2015g</li>
-<li>1.1.2-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libXext</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">Common X Extensions library</td>
-<td align="left"><ul>
-<li>1.3.2-Python-2.7.8</li>
-<li>1.3.3</li>
-<li>1.3.3-foss-2015g</li>
-<li>1.3.3-foss-2015g-Python-2.7.9</li>
-<li>1.3.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libXfixes</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X Fixes extension library</td>
-<td align="left"><ul>
-<li>5.0.1-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libXfont</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X font libary</td>
-<td align="left"><ul>
-<li>1.5.1-foss-2015g-Python-2.7.9</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libXft</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X11 client-side library</td>
-<td align="left"><ul>
-<li>2.3.2-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libXinerama</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">Xinerama multiple monitor library</td>
-<td align="left"><ul>
-<li>1.1.3-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>libXrender</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">X11 client-side library</td>
-<td align="left"><ul>
-<li>0.9.8-intel-2015b</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>libXt</strong><br />
-<a href="http://www.freedesktop.org/wiki/Software/xlibs" class="uri">http://www.freedesktop.org/wiki/Software/xlibs</a></td>
-<td align="left">libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).</td>
-<td align="left"><ul>
-<li>1.1.4-foss-2015g-libX11-1.6.2</li>
-<li>1.1.4-intel-2015b-libX11-1.6.2</li>
-<li>1.1.4-libX11-1.6.2</li>
-<li>1.1.5-foss-2015g</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>motif</strong><br />
-<a href="http://motif.ics.com/" class="uri">http://motif.ics.com/</a></td>
-<td align="left">Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix.</td>
-<td align="left"><ul>
-<li>2.3.4-foss-2015g-libX11-1.6.2</li>
-<li>2.3.4-intel-2015b-libX11-1.6.2</li>
-</ul></td>
-</tr>
-<tr class="odd">
-<td align="left"><strong>p4vasp</strong><br />
-<a href="http://www.p4vasp.at" class="uri">http://www.p4vasp.at</a></td>
-<td align="left">p4vasp is a visualization suite for the Vienna Ab-initio Simulation Package (VASP). It contains an extensible GUI framework, that can be used to view material structure, density of states, band-structure and more.</td>
-<td align="left"><ul>
-<li>0.3.29-GNU-4.9.3-2.25</li>
-</ul></td>
-</tr>
-<tr class="even">
-<td align="left"><strong>pixman</strong><br />
-<a href="http://www.pixman.org/" class="uri">http://www.pixman.org/</a></td>
-<td align="left">Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.</td>
-<td align="left"><ul>
-<li>0.32.6-foss-2015b</li>
-<li>0.32.6-intel-2015b</li>
-</ul></td>
-</tr>
-</tbody>
-</table>
-
-
diff --git a/docs.it4i.cz/salomon/network-1.md b/docs.it4i.cz/salomon/network-1.md
deleted file mode 100644
index 9f33cbadf144451994ea24bbce3c9631d6faf5e0..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/network-1.md
+++ /dev/null
@@ -1,83 +0,0 @@
-Network 
-=======
-
-
-
-  
-
-All compute and login nodes of Salomon are interconnected by 7D Enhanced
-hypercube
-[Infiniband](http://en.wikipedia.org/wiki/InfiniBand)
-network and by Gigabit
-[Ethernet](http://en.wikipedia.org/wiki/Ethernet)
-network. Only
-[Infiniband](http://en.wikipedia.org/wiki/InfiniBand)
-network may be used to transfer user data.
-
-Infiniband Network
-------------------
-
-All compute and login nodes of Salomon are interconnected by 7D Enhanced
-hypercube
-[Infiniband](http://en.wikipedia.org/wiki/InfiniBand)
-network (56 Gbps). The network topology is a [7D Enhanced
-hypercube](network-1/7d-enhanced-hypercube.html).
-
-Read more about schematic representation of the Salomon cluster [IB
-single-plain
-topology](network-1/ib-single-plane-topology.html)
-([hypercube
-dimension](network-1/7d-enhanced-hypercube.html)
-0).[<span></span>](network-1/IB%20single-plane%20topology%20-%20Accelerated%20nodes.pdf/view.html){.state-missing-value
-.contenttype-file}
-
--   -   
-
-The compute nodes may be accessed via the Infiniband network using ib0
-network interface, in address range 10.17.0.0 (mask 255.255.224.0). The
-MPI may be used to establish native Infiniband connection among the
-nodes.
-
-The network provides **2170MB/s** transfer rates via the TCP connection
-(single stream) and up to **3600MB/s** via native Infiniband protocol.
-
- 
-
-Example
--------
-
-``` 
-$ qsub -q qexp -l select=4:ncpus=16 -N Name0 ./myjob
-$ qstat -n -u username
-                                                            Req'd  Req'd   Elap
-Job ID          Username Queue    Jobname    SessID NDS TSK Memory Time  S Time
---------------- -------- -------- ---------- ------ --- --- ------ ----- - -----
-15209.isrv5     username qexp     Name0        5530   4  96    --  01:00 R 00:00
-   r4i1n0/0*24+r4i1n1/0*24+r4i1n2/0*24+r4i1n3/0*24
-```
-
-In this example, we access the node r4i1n0 by Infiniband network via the
-ib0 interface.
-
-``` 
-$ ssh 10.17.35.19
-```
-
-In this example, we <span style="text-align: start; float: none; ">get
-information of the Infiniband network.</span>
-
-``` 
-$ ifconfig
-....
-inet addr:10.17.35.19....
-....
-
-$ ip addr show ib0
-
-....
-inet 10.17.35.19....
-....
-```
-
-
-
diff --git a/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB single-plane topology - Accelerated nodes.pdf b/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/IB single-plane topology - Accelerated nodes.pdf
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diff --git a/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/schematic-representation-of-the-salomon-cluster-ib-single-plain-topology-hypercube-dimension-0.md b/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/schematic-representation-of-the-salomon-cluster-ib-single-plain-topology-hypercube-dimension-0.md
deleted file mode 100644
index 438318c84e40c62049a317c4d6a78d451eb553fd..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/network-1/ib-single-plane-topology/schematic-representation-of-the-salomon-cluster-ib-single-plain-topology-hypercube-dimension-0.md
+++ /dev/null
@@ -1,51 +0,0 @@
-IB single-plane topology 
-========================
-
-
-
-  
-
-A complete M-Cell assembly consists of four compute racks. Each rack
-contains 4x physical IRUs - Independent rack units. Using one dual
-socket node per one blade slot leads to 8 logical IRUs. Each rack
-contains 4x2 SGI ICE X IB Premium Blades.
-
-The SGI ICE X IB Premium Blade provides the first level of
-interconnection via dual 36-port Mellanox FDR InfiniBand ASIC switch
-with connections as follows:
-
--   9 ports from each switch chip connect to the unified backplane, to
-    connect the 18 compute node slots
--   3 ports on each chip provide connectivity between the chips
--   24 ports from each switch chip connect to the external bulkhead, for
-    a total of 48
-
-### **IB single-plane topology - ICEX Mcell**
-
-Each colour in each physical IRU represents one dual-switch ASIC switch.
-
-[![Mcell](IBsingleplanetopologyICEXMcellsmall.png "Mcell")](IB%20single-plane%20topology%20-%20ICEX%20Mcell.pdf)
-
- 
-
-### IB single-plane topology - Accelerated nodes
-
-Each of the 3 inter-connected D racks are equivalent to one half of
-Mcell rack. 18x D rack with MIC accelerated nodes [r21-r38] are
-equivalent to 3 Mcell racks as shown in a diagram [7D Enhanced
-Hypercube](../7d-enhanced-hypercube.html).
-
-As shown in a diagram [IB
-Topology](../Salomon_IB_topology.png):
-
--   Racks 21, 22, 23, 24, 25, 26 are equivalent to one Mcell rack.
--   Racks 27, 28, 29, 30, 31, 32 are equivalent to one Mcell rack.
--   Racks 33, 34, 35, 36, 37, 38 are equivalent to one Mcell rack.
-
-[![Accelerated
-nodes](IBsingleplanetopologyAcceleratednodessmall.png "Accelerated nodes")](IB%20single-plane%20topology%20-%20Accelerated%20nodes.pdf)
-
- 
-
-
-
diff --git a/docs.it4i.cz/salomon/resource-allocation-and-job-execution.md b/docs.it4i.cz/salomon/resource-allocation-and-job-execution.md
deleted file mode 100644
index b41891ce2e83a9b98a47c426e2e6e176e760f4ef..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/resource-allocation-and-job-execution.md
+++ /dev/null
@@ -1,67 +0,0 @@
-Resource Allocation and Job Execution 
-=====================================
-
-
-
-  
-
-To run a
-[job](resource-allocation-and-job-execution/job-submission-and-execution.html),
-[computational
-resources](resource-allocation-and-job-execution/resources-allocation-policy.html)
-for this particular job must be allocated. This is done via the PBS Pro
-job workload manager software, which efficiently distributes workloads
-across the supercomputer. Extensive informations about PBS Pro can be
-found in the [official documentation
-here](../pbspro-documentation.html), especially in the
-[PBS Pro User's
-Guide](../pbspro-documentation/pbspro-users-guide.1).
-
-Resources Allocation Policy
----------------------------
-
-The resources are allocated to the job in a fairshare fashion, subject
-to constraints set by the queue and resources available to the Project.
-[The
-Fairshare](resource-allocation-and-job-execution/job-priority.html)
-at Salomon ensures that individual users may consume approximately equal
-amount of resources per week. The resources are accessible via several
-queues for queueing the jobs. The queues provide prioritized and
-exclusive access to the computational resources. Following queues are
-available to Anselm users:
-
--   **qexp**, the Express queue
--   **qprod**, the Production queue****
--   **qlong**, the Long queue
--   **qmpp**, the Massively parallel queue
--   **qfat**, the queue to access SMP UV2000 machine
--   **qfree,** the Free resource utilization queue
-
-Check the queue status at <https://extranet.it4i.cz/rsweb/salomon/>
-
-Read more on the [Resource Allocation
-Policy](resource-allocation-and-job-execution/resources-allocation-policy.html)
-page.
-
-Job submission and execution
-----------------------------
-
-Use the **qsub** command to submit your jobs.
-
-The qsub submits the job into the queue. The qsub command creates a
-request to the PBS Job manager for allocation of specified resources. 
-The **smallest allocation unit is entire node, 24 cores**, with
-exception of the qexp queue. The resources will be allocated when
-available, subject to allocation policies and constraints. **After the
-resources are allocated the jobscript or interactive shell is executed
-on first of the allocated nodes.**
-
-Read more on the [Job submission and
-execution](resource-allocation-and-job-execution/job-submission-and-execution.html)
-page.
-
-HTML commented section #1 (removed Capacity computing section, this
-will be optimized for Salomon)
-
-
-
diff --git a/docs.it4i.cz/salomon/resource-allocation-and-job-execution/capacity-computing-example b/docs.it4i.cz/salomon/resource-allocation-and-job-execution/capacity-computing-example
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deleted file mode 100644
index 9365ab931a49eec462a6f2c24d3a86e5eaa7d9d1..0000000000000000000000000000000000000000
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diff --git a/docs.it4i.cz/salomon/salomon-2 b/docs.it4i.cz/salomon/salomon-2
deleted file mode 100644
index 00283bcbb639d32788f9e1171bda7d43f8e486bc..0000000000000000000000000000000000000000
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diff --git a/docs.it4i.cz/salomon/software/ansys/ansys-cfx-pbs-file.1 b/docs.it4i.cz/salomon/software/ansys/ansys-cfx-pbs-file.1
deleted file mode 100644
index 4c6b5fae56f64d33164ae7c75eda5c2f3757a769..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ansys-cfx-pbs-file.1
+++ /dev/null
@@ -1,32 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-CFX-Project
-#PBS -A XX-YY-ZZ
-#! Mail to user when job terminate or abort
-#PBS -m ae
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-module load ansys
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-echo Machines: $hl
-#-dev input.def includes the input of CFX analysis in DEF format
-/apps/all/ANSYS/16.1/v161/CFX/bin/cfx5solve -def input.def -size 4 -size-ni 4x -part-large -start-method "Platform MPI Distributed Parallel" -par-dist $hl
diff --git a/docs.it4i.cz/salomon/software/ansys/ansys-cfx-pbs-file/at_download/file b/docs.it4i.cz/salomon/software/ansys/ansys-cfx-pbs-file/at_download/file
deleted file mode 100644
index 4c6b5fae56f64d33164ae7c75eda5c2f3757a769..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ansys-cfx-pbs-file/at_download/file
+++ /dev/null
@@ -1,32 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-CFX-Project
-#PBS -A XX-YY-ZZ
-#! Mail to user when job terminate or abort
-#PBS -m ae
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-module load ansys
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-echo Machines: $hl
-#-dev input.def includes the input of CFX analysis in DEF format
-/apps/all/ANSYS/16.1/v161/CFX/bin/cfx5solve -def input.def -size 4 -size-ni 4x -part-large -start-method "Platform MPI Distributed Parallel" -par-dist $hl
diff --git a/docs.it4i.cz/salomon/software/ansys/ansys-fluent-pbs-file.1 b/docs.it4i.cz/salomon/software/ansys/ansys-fluent-pbs-file.1
deleted file mode 100644
index 8ce5af9eac06f79088cfc56add5e8165e7f60786..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ansys-fluent-pbs-file.1
+++ /dev/null
@@ -1,28 +0,0 @@
-#!/bin/bash
-#PBS -S /bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-Fluent-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-#### Load ansys module so that we find the cfx5solve command
-module load ansys
-
-# Use following line to specify MPI for message-passing instead
-NCORES=`wc -l $PBS_NODEFILE |awk '{print $1}'`
-
-/apps/all/ANSYS/16.1/v161/fluent/bin/fluent 3d -t$NCORES -cnf=$PBS_NODEFILE -g -i fluent.jou
diff --git a/docs.it4i.cz/salomon/software/ansys/ansys-fluent-pbs-file/at_download/file b/docs.it4i.cz/salomon/software/ansys/ansys-fluent-pbs-file/at_download/file
deleted file mode 100644
index 8ce5af9eac06f79088cfc56add5e8165e7f60786..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ansys-fluent-pbs-file/at_download/file
+++ /dev/null
@@ -1,28 +0,0 @@
-#!/bin/bash
-#PBS -S /bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-Fluent-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-#### Load ansys module so that we find the cfx5solve command
-module load ansys
-
-# Use following line to specify MPI for message-passing instead
-NCORES=`wc -l $PBS_NODEFILE |awk '{print $1}'`
-
-/apps/all/ANSYS/16.1/v161/fluent/bin/fluent 3d -t$NCORES -cnf=$PBS_NODEFILE -g -i fluent.jou
diff --git a/docs.it4i.cz/salomon/software/ansys/ansys-ls-dyna-pbs-file.1 b/docs.it4i.cz/salomon/software/ansys/ansys-ls-dyna-pbs-file.1
deleted file mode 100644
index ce9af16489d69be9d36301b3ba989d5ddd3e70ab..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ansys-ls-dyna-pbs-file.1
+++ /dev/null
@@ -1,43 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=8
-#PBS -q qprod
-#PBS -N $USER-DYNA-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory>
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-#! Counts the number of processors
-NPROCS=`wc -l < $PBS_NODEFILE`
-
-echo This job has allocated $NPROCS nodes
-
-module load ansys
-
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-
-echo Machines: $hl
-
-/apps/all/ANSYS/16.1/v161/ansys/bin/ansys161 -dis -lsdynampp i=input.k -machines $hl
diff --git a/docs.it4i.cz/salomon/software/ansys/ansys-ls-dyna-pbs-file/at_download/file b/docs.it4i.cz/salomon/software/ansys/ansys-ls-dyna-pbs-file/at_download/file
deleted file mode 100644
index ce9af16489d69be9d36301b3ba989d5ddd3e70ab..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ansys-ls-dyna-pbs-file/at_download/file
+++ /dev/null
@@ -1,43 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=8
-#PBS -q qprod
-#PBS -N $USER-DYNA-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory>
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-#! Counts the number of processors
-NPROCS=`wc -l < $PBS_NODEFILE`
-
-echo This job has allocated $NPROCS nodes
-
-module load ansys
-
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-
-echo Machines: $hl
-
-/apps/all/ANSYS/16.1/v161/ansys/bin/ansys161 -dis -lsdynampp i=input.k -machines $hl
diff --git a/docs.it4i.cz/salomon/software/ansys/ansys-mapdl-pbs-file.1 b/docs.it4i.cz/salomon/software/ansys/ansys-mapdl-pbs-file.1
deleted file mode 100644
index 52c26014071e7a5c525f4b8e8b7d1195c466f44d..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ansys-mapdl-pbs-file.1
+++ /dev/null
@@ -1,41 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-ANSYS-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-module load ansys
-
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-
-echo Machines: $hl
-
-#-i input.dat includes the input of analysis in APDL format
-#-o file.out is output file from ansys where all text outputs will be redirected 
-#-p the name of license feature (aa_r=ANSYS Academic Research, ane3fl=Multiphysics(commercial), aa_r_dy=Academic AUTODYN)
-/apps/all/ANSYS/16.1/v161/ansys/bin/ansys161 -b -dis -p aa_r -i input.dat -o file.out -machines $hl -dir $WORK_DIR
diff --git a/docs.it4i.cz/salomon/software/ansys/ansys-mapdl-pbs-file/at_download/file b/docs.it4i.cz/salomon/software/ansys/ansys-mapdl-pbs-file/at_download/file
deleted file mode 100644
index 52c26014071e7a5c525f4b8e8b7d1195c466f44d..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ansys-mapdl-pbs-file/at_download/file
+++ /dev/null
@@ -1,41 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=2:ppn=4
-#PBS -q qprod
-#PBS -N $USER-ANSYS-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-echo This jobs runs on the following processors:
-echo `cat $PBS_NODEFILE`
-
-module load ansys
-
-#### Set number of processors per host listing
-#### (set to 1 as $PBS_NODEFILE lists each node twice if :ppn=2)
-procs_per_host=1
-#### Create host list
-hl=""
-for host in `cat $PBS_NODEFILE`
-do
- if [ "$hl" = "" ]
- then hl="$host:$procs_per_host"
- else hl="${hl}:$host:$procs_per_host"
- fi
-done
-
-echo Machines: $hl
-
-#-i input.dat includes the input of analysis in APDL format
-#-o file.out is output file from ansys where all text outputs will be redirected 
-#-p the name of license feature (aa_r=ANSYS Academic Research, ane3fl=Multiphysics(commercial), aa_r_dy=Academic AUTODYN)
-/apps/all/ANSYS/16.1/v161/ansys/bin/ansys161 -b -dis -p aa_r -i input.dat -o file.out -machines $hl -dir $WORK_DIR
diff --git a/docs.it4i.cz/salomon/software/ansys/ls-dyna-pbs-file.1 b/docs.it4i.cz/salomon/software/ansys/ls-dyna-pbs-file.1
deleted file mode 100644
index 81fb179a41c7545facdc5ae4d10ccff410874e20..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ls-dyna-pbs-file.1
+++ /dev/null
@@ -1,21 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=1:ppn=1
-#PBS -q qprod
-#PBS -N $USER-LSDYNA-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-
-module load lsdyna
-
-/apps/engineering/lsdyna/lsdyna700s i=input.k
\ No newline at end of file
diff --git a/docs.it4i.cz/salomon/software/ansys/ls-dyna-pbs-file/at_download/file b/docs.it4i.cz/salomon/software/ansys/ls-dyna-pbs-file/at_download/file
deleted file mode 100644
index 81fb179a41c7545facdc5ae4d10ccff410874e20..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/ansys/ls-dyna-pbs-file/at_download/file
+++ /dev/null
@@ -1,21 +0,0 @@
-#!/bin/bash
-#PBS -l nodes=1:ppn=1
-#PBS -q qprod
-#PBS -N $USER-LSDYNA-Project
-#PBS -A XX-YY-ZZ
-
-#! Mail to user when job terminate or abort
-#PBS -m ae
-
-#!change the working directory (default is home directory)
-#cd <working directory> (working directory must exists)
-WORK_DIR="/scratch/$USER/work"
-cd $WORK_DIR
-
-echo Running on host `hostname`
-echo Time is `date`
-echo Directory is `pwd`
-
-module load lsdyna
-
-/apps/engineering/lsdyna/lsdyna700s i=input.k
\ No newline at end of file
diff --git a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/INCAR/at_download/file b/docs.it4i.cz/salomon/software/chemistry/phono3py-input/INCAR/at_download/file
deleted file mode 100644
index 4d2848958e6b7333abdb381bb664e1c389360741..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/INCAR/at_download/file
+++ /dev/null
@@ -1,13 +0,0 @@
-  PREC = Accurate
-  IBRION = -1
-  ENCUT = 500
-  EDIFF = 1.0e-08
-  ISMEAR = 0 
-  SIGMA = 0.01
-  IALGO = 38
-  LREAL = .FALSE.
-  ADDGRID = .TRUE.
-  LWAVE = .FALSE.
-  LCHARG = .FALSE.
-  NCORE = 8 
-  KPAR = 8
diff --git a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/KPOINTS/at_download/file b/docs.it4i.cz/salomon/software/chemistry/phono3py-input/KPOINTS/at_download/file
deleted file mode 100644
index cae7400392404a4c9c4e3e7969722ed578825c51..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/KPOINTS/at_download/file
+++ /dev/null
@@ -1,6 +0,0 @@
-Automatic mesh
-0
-Monkhorst Pack
-  3 3 3
-0.5 0.5 0.5
-
diff --git a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/POTCAR/at_download/file b/docs.it4i.cz/salomon/software/chemistry/phono3py-input/POTCAR/at_download/file
deleted file mode 100644
index e69e8a3044c2885f5fc7d2b1e1c90ba7ffef914a..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/POTCAR/at_download/file
+++ /dev/null
@@ -1,2208 +0,0 @@
-  PAW_PBE Si 05Jan2001                   
-   4.00000000000000     
- parameters from PSCTR are:
-   VRHFIN =Si: s2p2
-   LEXCH  = PE
-   EATOM  =   103.0669 eV,    7.5752 Ry
-
-   TITEL  = PAW_PBE Si 05Jan2001
-   LULTRA =        F    use ultrasoft PP ?
-   IUNSCR =        1    unscreen: 0-lin 1-nonlin 2-no
-   RPACOR =    1.500    partial core radius
-   POMASS =   28.085; ZVAL   =    4.000    mass and valenz
-   RCORE  =    1.900    outmost cutoff radius
-   RWIGS  =    2.480; RWIGS  =    1.312    wigner-seitz radius (au A)
-   ENMAX  =  245.345; ENMIN  =  184.009 eV
-   ICORE  =        2    local potential
-   LCOR   =        T    correct aug charges
-   LPAW   =        T    paw PP
-   EAUG   =  322.069
-   DEXC   =    0.000
-   RMAX   =    1.950    core radius for proj-oper
-   RAUG   =    1.300    factor for augmentation sphere
-   RDEP   =    1.993    radius for radial grids
-   RDEPT  =    1.837    core radius for aug-charge
- 
-   Atomic configuration
-    6 entries
-     n  l   j            E        occ.
-     1  0  0.50     -1785.8828   2.0000
-     2  0  0.50      -139.4969   2.0000
-     2  1  1.50       -95.5546   6.0000
-     3  0  0.50       -10.8127   2.0000
-     3  1  0.50        -4.0811   2.0000
-     3  2  1.50        -4.0817   0.0000
-   Description
-     l       E           TYP  RCUT    TYP  RCUT
-     0    -10.8127223     23  1.900
-     0     -7.6451159     23  1.900
-     1     -4.0811372     23  1.900
-     1      2.4879257     23  1.900
-     2     -4.0817478      7  1.900
-   Error from kinetic energy argument (eV)
-   NDATA  =      100
-   STEP   =   20.000   1.050
-  10.1      9.04      8.56      7.65      7.23      6.44      5.73      5.40
-  4.79      4.25      4.00      3.54      3.13      2.77      2.45      2.16
-  1.91      1.69      1.50      1.24      1.10     0.975     0.812     0.718
- 0.636     0.529     0.440     0.388     0.322     0.266     0.219     0.180
- 0.148     0.121     0.986E-01 0.804E-01 0.614E-01 0.504E-01 0.392E-01 0.328E-01
- 0.265E-01 0.220E-01 0.189E-01 0.166E-01 0.149E-01 0.135E-01 0.123E-01 0.109E-01
- 0.977E-02 0.840E-02 0.707E-02 0.605E-02 0.488E-02 0.387E-02 0.290E-02 0.229E-02
- 0.185E-02 0.152E-02 0.134E-02 0.125E-02 0.121E-02 0.117E-02 0.112E-02 0.102E-02
- 0.915E-03 0.776E-03 0.640E-03 0.524E-03 0.425E-03 0.369E-03 0.331E-03 0.310E-03
- 0.294E-03 0.273E-03 0.242E-03 0.210E-03 0.175E-03 0.146E-03 0.124E-03 0.113E-03
- 0.105E-03 0.973E-04 0.879E-04 0.755E-04 0.633E-04 0.539E-04 0.478E-04 0.438E-04
- 0.404E-04 0.362E-04 0.308E-04 0.264E-04 0.229E-04 0.209E-04 0.192E-04 0.170E-04
- 0.145E-04 0.126E-04 0.112E-04 0.103E-04
-END of PSCTR-controll parameters
- local part
-   98.2657514061040     
-  0.84157827E+01  0.84210738E+01  0.84276982E+01  0.84387529E+01  0.84542581E+01
-  0.84742396E+01  0.84987267E+01  0.85277503E+01  0.85613408E+01  0.85995259E+01
-  0.86423293E+01  0.86897698E+01  0.87418601E+01  0.87986073E+01  0.88600119E+01
-  0.89260684E+01  0.89967646E+01  0.90720817E+01  0.91519931E+01  0.92364635E+01
-  0.93254478E+01  0.94188892E+01  0.95167180E+01  0.96188495E+01  0.97251831E+01
-  0.98356006E+01  0.99499656E+01  0.10068122E+02  0.10189896E+02  0.10315092E+02
-  0.10443494E+02  0.10574869E+02  0.10708960E+02  0.10845494E+02  0.10984175E+02
-  0.11124688E+02  0.11266699E+02  0.11409854E+02  0.11553782E+02  0.11698093E+02
-  0.11842379E+02  0.11986220E+02  0.12129179E+02  0.12270807E+02  0.12410647E+02
-  0.12548229E+02  0.12683078E+02  0.12814715E+02  0.12942655E+02  0.13066413E+02
-  0.13185507E+02  0.13299453E+02  0.13407778E+02  0.13510011E+02  0.13605696E+02
-  0.13694386E+02  0.13775649E+02  0.13849071E+02  0.13914257E+02  0.13970832E+02
-  0.14018447E+02  0.14056776E+02  0.14085521E+02  0.14104413E+02  0.14113214E+02
-  0.14111717E+02  0.14099750E+02  0.14077174E+02  0.14043887E+02  0.13999823E+02
-  0.13944953E+02  0.13879287E+02  0.13802871E+02  0.13715791E+02  0.13618172E+02
-  0.13510174E+02  0.13391995E+02  0.13263871E+02  0.13126072E+02  0.12978902E+02
-  0.12822701E+02  0.12657837E+02  0.12484712E+02  0.12303752E+02  0.12115414E+02
-  0.11920177E+02  0.11718542E+02  0.11511032E+02  0.11298186E+02  0.11080557E+02
-  0.10858712E+02  0.10633228E+02  0.10404687E+02  0.10173679E+02  0.99407916E+01
-  0.97066145E+01  0.94717325E+01  0.92367246E+01  0.90021610E+01  0.87686002E+01
-  0.85365875E+01  0.83066515E+01  0.80793028E+01  0.78550311E+01  0.76343038E+01
-  0.74175639E+01  0.72052283E+01  0.69976864E+01  0.67952987E+01  0.65983955E+01
-  0.64072761E+01  0.62222079E+01  0.60434255E+01  0.58711305E+01  0.57054914E+01
-  0.55466428E+01  0.53946864E+01  0.52496904E+01  0.51116908E+01  0.49806913E+01
-  0.48566647E+01  0.47395535E+01  0.46292714E+01  0.45257040E+01  0.44287107E+01
-  0.43381259E+01  0.42537609E+01  0.41754051E+01  0.41028283E+01  0.40357824E+01
-  0.39740032E+01  0.39172126E+01  0.38651205E+01  0.38174269E+01  0.37738239E+01
-  0.37339980E+01  0.36976316E+01  0.36644057E+01  0.36340010E+01  0.36061008E+01
-  0.35803917E+01  0.35565662E+01  0.35343243E+01  0.35133744E+01  0.34934356E+01
-  0.34742386E+01  0.34555273E+01  0.34370594E+01  0.34186082E+01  0.33999625E+01
-  0.33809283E+01  0.33613289E+01  0.33410051E+01  0.33198163E+01  0.32976400E+01
-  0.32743723E+01  0.32499276E+01  0.32242386E+01  0.31972561E+01  0.31689481E+01
-  0.31393000E+01  0.31083133E+01  0.30760055E+01  0.30424088E+01  0.30075693E+01
-  0.29715464E+01  0.29344112E+01  0.28962459E+01  0.28571426E+01  0.28172018E+01
-  0.27765317E+01  0.27352466E+01  0.26934661E+01  0.26513137E+01  0.26089155E+01
-  0.25663991E+01  0.25238926E+01  0.24815235E+01  0.24394172E+01  0.23976965E+01
-  0.23564804E+01  0.23158831E+01  0.22760134E+01  0.22369739E+01  0.21988601E+01
-  0.21617599E+01  0.21257533E+01  0.20909117E+01  0.20572975E+01  0.20249639E+01
-  0.19939549E+01  0.19643047E+01  0.19360380E+01  0.19091702E+01  0.18837070E+01
-  0.18596451E+01  0.18369721E+01  0.18156671E+01  0.17957010E+01  0.17770369E+01
-  0.17596305E+01  0.17434311E+01  0.17283815E+01  0.17144192E+01  0.17014767E+01
-  0.16894823E+01  0.16783606E+01  0.16680337E+01  0.16584212E+01  0.16494414E+01
-  0.16410120E+01  0.16330503E+01  0.16254746E+01  0.16182040E+01  0.16111597E+01
-  0.16042653E+01  0.15974473E+01  0.15906355E+01  0.15837638E+01  0.15767703E+01
-  0.15695978E+01  0.15621942E+01  0.15545124E+01  0.15465111E+01  0.15381545E+01
-  0.15294125E+01  0.15202610E+01  0.15106817E+01  0.15006618E+01  0.14901946E+01
-  0.14792787E+01  0.14679181E+01  0.14561220E+01  0.14439045E+01  0.14312843E+01
-  0.14182845E+01  0.14049320E+01  0.13912573E+01  0.13772941E+01  0.13630790E+01
-  0.13486508E+01  0.13340503E+01  0.13193195E+01  0.13045019E+01  0.12896413E+01
-  0.12747816E+01  0.12599667E+01  0.12452398E+01  0.12306429E+01  0.12162169E+01
-  0.12020007E+01  0.11880315E+01  0.11743438E+01  0.11609698E+01  0.11479386E+01
-  0.11352766E+01  0.11230067E+01  0.11111486E+01  0.10997185E+01  0.10887293E+01
-  0.10781901E+01  0.10681067E+01  0.10584812E+01  0.10493126E+01  0.10405963E+01
-  0.10323245E+01  0.10244864E+01  0.10170684E+01  0.10100541E+01  0.10034245E+01
-  0.99715842E+00  0.99123278E+00  0.98562260E+00  0.98030147E+00  0.97524176E+00
-  0.97041492E+00  0.96579177E+00  0.96134272E+00  0.95703813E+00  0.95284851E+00
-  0.94874481E+00  0.94469866E+00  0.94068261E+00  0.93667036E+00  0.93263699E+00
-  0.92855911E+00  0.92441506E+00  0.92018508E+00  0.91585139E+00  0.91139837E+00
-  0.90681257E+00  0.90208284E+00  0.89720031E+00  0.89215846E+00  0.88695307E+00
-  0.88158221E+00  0.87604623E+00  0.87034764E+00  0.86449105E+00  0.85848310E+00
-  0.85233228E+00  0.84604885E+00  0.83964467E+00  0.83313304E+00  0.82652853E+00
-  0.81984678E+00  0.81310436E+00  0.80631854E+00  0.79950711E+00  0.79268821E+00
-  0.78588011E+00  0.77910103E+00  0.77236900E+00  0.76570163E+00  0.75911595E+00
-  0.75262828E+00  0.74625406E+00  0.74000769E+00  0.73390245E+00  0.72795034E+00
-  0.72216201E+00  0.71654666E+00  0.71111201E+00  0.70586419E+00  0.70080779E+00
-  0.69594576E+00  0.69127948E+00  0.68680873E+00  0.68253171E+00  0.67844512E+00
-  0.67454419E+00  0.67082277E+00  0.66727336E+00  0.66388728E+00  0.66065470E+00
-  0.65756482E+00  0.65460595E+00  0.65176565E+00  0.64903085E+00  0.64638804E+00
-  0.64382333E+00  0.64132264E+00  0.63887182E+00  0.63645681E+00  0.63406371E+00
-  0.63167898E+00  0.62928953E+00  0.62688282E+00  0.62444703E+00  0.62197109E+00
-  0.61944485E+00  0.61685909E+00  0.61420564E+00  0.61147745E+00  0.60866857E+00
-  0.60577426E+00  0.60279097E+00  0.59971637E+00  0.59654936E+00  0.59329001E+00
-  0.58993961E+00  0.58650059E+00  0.58297648E+00  0.57937187E+00  0.57569237E+00
-  0.57194448E+00  0.56813556E+00  0.56427372E+00  0.56036773E+00  0.55642691E+00
-  0.55246106E+00  0.54848032E+00  0.54449508E+00  0.54051586E+00  0.53655323E+00
-  0.53261770E+00  0.52871958E+00  0.52486894E+00  0.52107546E+00  0.51734836E+00
-  0.51369633E+00  0.51012743E+00  0.50664899E+00  0.50326761E+00  0.49998904E+00
-  0.49681819E+00  0.49375905E+00  0.49081466E+00  0.48798714E+00  0.48527765E+00
-  0.48268635E+00  0.48021249E+00  0.47785436E+00  0.47560937E+00  0.47347400E+00
-  0.47144395E+00  0.46951410E+00  0.46767862E+00  0.46593101E+00  0.46426418E+00
-  0.46267051E+00  0.46114196E+00  0.45967012E+00  0.45824631E+00  0.45686165E+00
-  0.45550718E+00  0.45417389E+00  0.45285284E+00  0.45153526E+00  0.45021257E+00
-  0.44887651E+00  0.44751921E+00  0.44613322E+00  0.44471163E+00  0.44324809E+00
-  0.44173687E+00  0.44017292E+00  0.43855189E+00  0.43687018E+00  0.43512494E+00
-  0.43331410E+00  0.43143638E+00  0.42949128E+00  0.42747908E+00  0.42540083E+00
-  0.42325834E+00  0.42105410E+00  0.41879135E+00  0.41647393E+00  0.41410629E+00
-  0.41169346E+00  0.40924092E+00  0.40675463E+00  0.40424087E+00  0.40170626E+00
-  0.39915764E+00  0.39660202E+00  0.39404651E+00  0.39149826E+00  0.38896435E+00
-  0.38645179E+00  0.38396739E+00  0.38151775E+00  0.37910915E+00  0.37674752E+00
-  0.37443839E+00  0.37218682E+00  0.36999739E+00  0.36787410E+00  0.36582042E+00
-  0.36383920E+00  0.36193268E+00  0.36010247E+00  0.35834954E+00  0.35667423E+00
-  0.35507622E+00  0.35355459E+00  0.35210779E+00  0.35073369E+00  0.34942958E+00
-  0.34819223E+00  0.34701790E+00  0.34590241E+00  0.34484115E+00  0.34382917E+00
-  0.34286120E+00  0.34193171E+00  0.34103498E+00  0.34016513E+00  0.33931621E+00
-  0.33848221E+00  0.33765717E+00  0.33683518E+00  0.33601049E+00  0.33517751E+00
-  0.33433089E+00  0.33346559E+00  0.33257685E+00  0.33166032E+00  0.33071204E+00
-  0.32972848E+00  0.32870659E+00  0.32764378E+00  0.32653800E+00  0.32538767E+00
-  0.32419176E+00  0.32294975E+00  0.32166166E+00  0.32032801E+00  0.31894983E+00
-  0.31752862E+00  0.31606638E+00  0.31456552E+00  0.31302889E+00  0.31145970E+00
-  0.30986149E+00  0.30823814E+00  0.30659375E+00  0.30493266E+00  0.30325937E+00
-  0.30157850E+00  0.29989478E+00  0.29821295E+00  0.29653774E+00  0.29487384E+00
-  0.29322581E+00  0.29159810E+00  0.28999494E+00  0.28842037E+00  0.28687815E+00
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-  0.24122491E+00  0.24009654E+00  0.23895742E+00  0.23781058E+00  0.23665912E+00
-  0.23550619E+00  0.23435497E+00  0.23320861E+00  0.23207023E+00  0.23094290E+00
-  0.22982954E+00  0.22873298E+00  0.22765588E+00  0.22660071E+00  0.22556975E+00
-  0.22456503E+00  0.22358838E+00  0.22264133E+00  0.22172517E+00  0.22084090E+00
-  0.21998924E+00  0.21917062E+00  0.21838518E+00  0.21763278E+00  0.21691298E+00
-  0.21622507E+00  0.21556808E+00  0.21494076E+00  0.21434166E+00  0.21376905E+00
-  0.21322105E+00  0.21269556E+00  0.21219033E+00  0.21170298E+00  0.21123101E+00
-  0.21077184E+00  0.21032282E+00  0.20988128E+00  0.20944453E+00  0.20900989E+00
-  0.20857473E+00  0.20813650E+00  0.20769272E+00  0.20724104E+00  0.20677924E+00
-  0.20630528E+00  0.20581727E+00  0.20531352E+00  0.20479256E+00  0.20425312E+00
-  0.20369419E+00  0.20311496E+00  0.20251488E+00  0.20189363E+00  0.20125114E+00
-  0.20058759E+00  0.19990339E+00  0.19919917E+00  0.19847580E+00  0.19773436E+00
-  0.19697612E+00  0.19620254E+00  0.19541525E+00  0.19461602E+00  0.19380675E+00
-  0.19298946E+00  0.19216623E+00  0.19133925E+00  0.19051071E+00  0.18968285E+00
-  0.18885789E+00  0.18803806E+00  0.18722550E+00  0.18642234E+00  0.18563058E+00
-  0.18485213E+00  0.18408879E+00  0.18334221E+00  0.18261386E+00  0.18190508E+00
-  0.18121702E+00  0.18055061E+00  0.17990663E+00  0.17928561E+00  0.17868791E+00
-  0.17811368E+00  0.17756283E+00  0.17703511E+00  0.17653003E+00  0.17604693E+00
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-  0.16840425E+00  0.16801322E+00  0.16760831E+00  0.16718876E+00  0.16675395E+00
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-  0.16381364E+00  0.16327019E+00  0.16271304E+00  0.16214313E+00  0.16156154E+00
-  0.16096948E+00  0.16036827E+00  0.15975933E+00  0.15914418E+00  0.15852437E+00
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-  0.15480073E+00  0.15419485E+00  0.15359745E+00  0.15300998E+00  0.15243381E+00
-  0.15187022E+00  0.15132035E+00  0.15078523E+00  0.15026574E+00  0.14976264E+00
-  0.14927652E+00  0.14880782E+00  0.14835684E+00  0.14792369E+00  0.14750835E+00
-  0.14711063E+00  0.14673020E+00  0.14636656E+00  0.14601907E+00  0.14568697E+00
-  0.14536935E+00  0.14506518E+00  0.14477334E+00  0.14449260E+00  0.14422166E+00
-  0.14395913E+00  0.14370359E+00  0.14345355E+00  0.14320753E+00  0.14296401E+00
-  0.14272149E+00  0.14247846E+00  0.14223347E+00  0.14198509E+00  0.14173199E+00
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-  0.13631991E+00  0.13588203E+00  0.13543449E+00  0.13497823E+00  0.13451425E+00
-  0.13404367E+00  0.13356764E+00  0.13308739E+00  0.13260420E+00  0.13211936E+00
-  0.13163422E+00  0.13115008E+00  0.13066829E+00  0.13019015E+00  0.12971693E+00
-  0.12924988E+00  0.12879016E+00  0.12833890E+00  0.12789711E+00  0.12746576E+00
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-  0.12130077E+00  0.12111171E+00  0.12092509E+00  0.12073970E+00  0.12055436E+00
-  0.12036791E+00  0.12017920E+00  0.11998713E+00  0.11979067E+00  0.11958882E+00
-  0.11938067E+00  0.11916539E+00  0.11894223E+00  0.11871054E+00  0.11846977E+00
-  0.11821946E+00  0.11795928E+00  0.11768898E+00  0.11740846E+00  0.11711769E+00
-  0.11681676E+00  0.11650590E+00  0.11618540E+00  0.11585569E+00  0.11551727E+00
-  0.11517075E+00  0.11481682E+00  0.11445624E+00  0.11408986E+00  0.11371856E+00
-  0.11334329E+00  0.11296505E+00  0.11258484E+00  0.11220371E+00  0.11182270E+00
-  0.11144287E+00  0.11106526E+00  0.11069088E+00  0.11032073E+00  0.10995575E+00
-  0.10959686E+00  0.10924489E+00  0.10890064E+00  0.10856481E+00  0.10823802E+00
-  0.10792083E+00  0.10761369E+00  0.10731697E+00  0.10703093E+00  0.10675575E+00
-  0.10649150E+00  0.10623816E+00  0.10599560E+00  0.10576362E+00  0.10554191E+00
-  0.10533006E+00  0.10512760E+00  0.10493397E+00  0.10474853E+00  0.10457057E+00
-  0.10439934E+00  0.10423403E+00  0.10407377E+00  0.10391769E+00  0.10376486E+00
-  0.10361436E+00  0.10346525E+00  0.10331660E+00  0.10316749E+00  0.10301700E+00
-  0.10286427E+00  0.10270845E+00  0.10254875E+00  0.10238443E+00  0.10221481E+00
-  0.10203926E+00  0.10185725E+00  0.10166830E+00  0.10147204E+00  0.10126815E+00
-  0.10105642E+00  0.10083671E+00  0.10060898E+00  0.10037327E+00  0.10012971E+00
-  0.99878499E-01  0.99619941E-01  0.99354403E-01  0.99082329E-01  0.98804234E-01
-  0.98520694E-01  0.98232343E-01  0.97939865E-01  0.97643987E-01  0.97345468E-01
-  0.97045098E-01  0.96743682E-01  0.96442039E-01  0.96140988E-01  0.95841346E-01
-  0.95543917E-01  0.95249483E-01  0.94958801E-01  0.94672589E-01  0.94391526E-01
-  0.94116241E-01  0.93847307E-01  0.93585238E-01  0.93330481E-01  0.93083416E-01
-  0.92844349E-01  0.92613514E-01  0.92391067E-01  0.92177088E-01  0.91971582E-01
-  0.91774473E-01  0.91585615E-01  0.91404784E-01  0.91231686E-01  0.91065960E-01
-  0.90907179E-01  0.90754858E-01  0.90608455E-01  0.90467383E-01  0.90331010E-01
-  0.90198671E-01  0.90069670E-01  0.89943293E-01  0.89818810E-01  0.89695483E-01
-  0.89572578E-01  0.89449363E-01  0.89325125E-01  0.89199170E-01  0.89070830E-01
-  0.88939475E-01  0.88804513E-01  0.88665401E-01  0.88521645E-01  0.88372809E-01
-  0.88218518E-01  0.88058459E-01  0.87892386E-01  0.87720120E-01  0.87541552E-01
-  0.87356640E-01  0.87165411E-01  0.86967963E-01  0.86764459E-01  0.86555125E-01
-  0.86340254E-01  0.86120194E-01  0.85895352E-01  0.85666183E-01  0.85433191E-01
-  0.85196919E-01  0.84957943E-01  0.84716871E-01  0.84474330E-01  0.84230965E-01
-  0.83987427E-01  0.83744375E-01  0.83502460E-01  0.83262325E-01  0.83024599E-01
-  0.82789886E-01  0.82558766E-01  0.82331783E-01  0.82109442E-01  0.81892206E-01
-  0.81680487E-01  0.81474646E-01  0.81274989E-01  0.81081762E-01  0.80895153E-01
-  0.80715285E-01  0.80542223E-01  0.80375965E-01  0.80216452E-01  0.80063558E-01
-  0.79917102E-01  0.79776842E-01  0.79642482E-01  0.79513673E-01  0.79390016E-01
-  0.79271070E-01  0.79156353E-01  0.79045348E-01  0.78937510E-01  0.78832270E-01
-  0.78729044E-01  0.78627233E-01  0.78526236E-01  0.78425450E-01  0.78324279E-01
-  0.78222140E-01  0.78118466E-01  0.78012713E-01  0.77904366E-01  0.77792943E-01
-  0.77678000E-01  0.77559135E-01  0.77435994E-01  0.77308271E-01  0.77175713E-01
-  0.77038121E-01  0.76895353E-01  0.76747321E-01  0.76593998E-01  0.76435410E-01
-  0.76271640E-01  0.76102829E-01  0.75929167E-01  0.75750899E-01  0.75568317E-01
- gradient corrections used for XC
-           5
- core charge-density (partial)
-  0.13681949E+01  0.13676959E+01  0.13662000E+01  0.13637104E+01  0.13602324E+01
-  0.13557734E+01  0.13503428E+01  0.13439523E+01  0.13366153E+01  0.13283472E+01
-  0.13191654E+01  0.13090891E+01  0.12981392E+01  0.12863383E+01  0.12737106E+01
-  0.12602819E+01  0.12460793E+01  0.12311313E+01  0.12154677E+01  0.11991193E+01
-  0.11821181E+01  0.11644969E+01  0.11462894E+01  0.11275300E+01  0.11082538E+01
-  0.10884961E+01  0.10682931E+01  0.10476808E+01  0.10266956E+01  0.10053741E+01
-  0.98375262E+00  0.96186755E+00  0.93975498E+00  0.91745072E+00  0.89499016E+00
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-  0.75885532E+00  0.73624100E+00  0.71372964E+00  0.69134965E+00  0.66912839E+00
-  0.64709210E+00  0.62526589E+00  0.60367368E+00  0.58233822E+00  0.56128101E+00
-  0.54052235E+00  0.52008128E+00  0.49997557E+00  0.48022176E+00  0.46083511E+00
-  0.44182966E+00  0.42321818E+00  0.40501223E+00  0.38722214E+00  0.36985705E+00
-  0.35292494E+00  0.33643261E+00  0.32038576E+00  0.30478900E+00  0.28964586E+00
-  0.27495885E+00  0.26072948E+00  0.24695831E+00  0.23364497E+00  0.22078821E+00
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-  0.73371502E-01  0.67429213E-01  0.61816795E-01  0.56523931E-01  0.51540200E-01
-  0.46855106E-01  0.42458107E-01  0.38338646E-01  0.34486172E-01  0.30890172E-01
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- -0.35166057E-02 -0.34188437E-02 -0.33017394E-02 -0.31682955E-02 -0.30213003E-02
- -0.28633343E-02 -0.26967779E-02 -0.25238181E-02 -0.23464567E-02 -0.21665170E-02
- -0.19856524E-02 -0.18053531E-02 -0.16269545E-02 -0.14516446E-02 -0.12804716E-02
- -0.11143515E-02 -0.95407586E-03 -0.80031865E-03 -0.65364404E-03 -0.51451333E-03
- -0.38329200E-03 -0.26025655E-03 -0.14560117E-03 -0.39444206E-04  0.58165511E-04
-  0.14724262E-03  0.22785936E-03  0.30013988E-03  0.36425486E-03  0.42041628E-03
-  0.46887249E-03  0.50990345E-03  0.54381626E-03  0.57094089E-03  0.59162618E-03
-  0.60623606E-03  0.61514598E-03  0.61873965E-03  0.61740590E-03  0.61153586E-03
-  0.60152029E-03  0.58774720E-03  0.57059962E-03  0.55045360E-03  0.52767638E-03
-  0.50262483E-03  0.47564398E-03  0.44706578E-03  0.41720804E-03  0.38637349E-03
-  0.35484905E-03  0.32290520E-03  0.29079554E-03  0.25875640E-03  0.22700668E-03
-  0.19574774E-03  0.16516339E-03  0.13542003E-03  0.10666685E-03  0.79036085E-04
-  0.52643449E-04  0.27588516E-04  0.39552468E-05 -0.18187463E-04 -0.38785176E-04
- -0.57797261E-04 -0.75196218E-04 -0.90966955E-04 -0.10510606E-03 -0.11762103E-03
- -0.12852953E-03 -0.13785857E-03 -0.14564378E-03 -0.15192857E-03 -0.15676342E-03
- -0.16020506E-03 -0.16231574E-03 -0.16316249E-03 -0.16281640E-03 -0.16135194E-03
- -0.15884627E-03 -0.15537858E-03 -0.15102952E-03 -0.14588055E-03 -0.14001345E-03
- -0.13350974E-03 -0.12645021E-03 -0.11891448E-03 -0.11098055E-03 -0.10272444E-03
- -0.94219805E-04 -0.85537640E-04 -0.76745997E-04 -0.67909725E-04 -0.59090261E-04
- -0.50345444E-04 -0.41729365E-04 -0.33292246E-04 -0.25080348E-04 -0.17135911E-04
- -0.94971158E-05 -0.21980783E-05  0.47311370E-05  0.11264478E-04  0.17379845E-04
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-  0.53827164E-04  0.52670300E-04  0.51216400E-04  0.49489532E-04  0.47514308E-04
-  0.45315698E-04  0.42918862E-04  0.40348985E-04  0.37631122E-04  0.34790049E-04
-  0.31850125E-04  0.28835161E-04  0.25768302E-04  0.22671916E-04  0.19567494E-04
-  0.16475560E-04  0.13415592E-04  0.10405948E-04  0.74638125E-05  0.46051404E-05
-  0.18446199E-05 -0.80435987E-06 -0.33297298E-05 -0.57207546E-05 -0.79680364E-05
- -0.10063512E-04 -0.12000439E-04 -0.13773380E-04 -0.15378176E-04 -0.16811912E-04
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- -0.21805037E-04 -0.22055053E-04 -0.22149916E-04 -0.22095648E-04 -0.21898950E-04
- -0.21567127E-04 -0.21108021E-04 -0.20529939E-04 -0.19841581E-04 -0.19051971E-04
- -0.18170386E-04 -0.17206292E-04 -0.16169276E-04 -0.15068979E-04 -0.13915042E-04
- -0.12717039E-04 -0.11484427E-04 -0.10226489E-04 -0.89522885E-05 -0.76706185E-05
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- atomic pseudo charge-density
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- -0.45840579E-07 -0.50371762E-07 -0.54368736E-07 -0.57800081E-07 -0.60640121E-07
- -0.62869100E-07 -0.64473297E-07 -0.65445078E-07 -0.65782899E-07 -0.65491242E-07
- -0.64580506E-07 -0.63066827E-07 -0.60971865E-07 -0.58322529E-07 -0.55150654E-07
- -0.51492651E-07 -0.47389095E-07 -0.42884300E-07 -0.38025850E-07 -0.32864112E-07
- -0.27451723E-07 -0.21843067E-07 -0.16093737E-07 -0.10259996E-07 -0.43982344E-08
-  0.14355627E-08  0.71863441E-08  0.12800501E-07  0.18226358E-07  0.23414641E-07
-  0.28318911E-07  0.32895976E-07  0.37106258E-07  0.40914127E-07  0.44288191E-07
-  0.47201541E-07  0.49631959E-07  0.51562064E-07  0.52979429E-07  0.53876634E-07
-  0.54251276E-07  0.54105940E-07  0.53448106E-07  0.52290030E-07  0.50648562E-07
-  0.48544941E-07  0.46004535E-07  0.43056558E-07  0.39733743E-07  0.36071996E-07
-  0.32110014E-07  0.27888888E-07  0.23451687E-07  0.18843027E-07  0.14108626E-07
-  0.92948675E-08  0.44483443E-08 -0.38457840E-09 -0.51582018E-08 -0.98279172E-08
- -0.14350616E-07 -0.18685080E-07 -0.22792350E-07 -0.26636066E-07 -0.30182785E-07
- -0.33402261E-07 -0.36267695E-07 -0.38755949E-07 -0.40847725E-07 -0.42527701E-07
- -0.43784631E-07 -0.44611406E-07 -0.45005075E-07 -0.44966822E-07 -0.44501911E-07
- -0.43619591E-07 -0.42332959E-07 -0.40658796E-07 -0.38617367E-07 -0.36232185E-07
- -0.33529757E-07 -0.30539298E-07 -0.27292420E-07 -0.23822813E-07 -0.20165895E-07
- -0.16358462E-07 -0.12438321E-07 -0.84439245E-08 -0.44139948E-08 -0.38715706E-09
-  0.35984264E-08  0.75054122E-08  0.11297620E-07  0.14940364E-07  0.18400759E-07
-  0.21648020E-07  0.24653721E-07  0.27392046E-07  0.29839999E-07  0.31977589E-07
-  0.33787991E-07  0.35257666E-07  0.36376450E-07  0.37137619E-07  0.37537909E-07
-  0.37577509E-07  0.37260025E-07  0.36592399E-07  0.35584817E-07  0.34250568E-07
-  0.32605889E-07  0.30669776E-07  0.28463775E-07  0.26011753E-07  0.23339640E-07
-  0.20475168E-07  0.17447585E-07  0.14287364E-07  0.11025901E-07  0.76952074E-08
-  0.43276014E-08  0.95539922E-09 -0.23893908E-08 -0.56753669E-08 -0.88720247E-08
- -0.11950035E-07 -0.14881510E-07 -0.17640250E-07 -0.20201972E-07 -0.22544524E-07
- -0.24648063E-07 -0.26495225E-07 -0.28071260E-07 -0.29364144E-07 -0.30364661E-07
- -0.31066465E-07 -0.31466104E-07 -0.31563026E-07 -0.31359549E-07 -0.30860813E-07
- -0.30074696E-07 -0.29011715E-07 -0.27684894E-07 -0.26109618E-07 -0.24303457E-07
- -0.22285982E-07 -0.20078552E-07 -0.17704100E-07 -0.15186893E-07 -0.12552291E-07
- -0.98264954E-08 -0.70362916E-08 -0.42087888E-08 -0.13711612E-08  0.14496101E-08
-  0.42269901E-08  0.69351355E-08  0.95491319E-08  0.12045220E-07  0.14401006E-07
-  0.16595662E-07  0.18610102E-07  0.20427146E-07  0.22031661E-07  0.23410684E-07
-  0.24553519E-07  0.25451815E-07  0.26099624E-07  0.26493423E-07  0.26632132E-07
-  0.26517089E-07  0.26152020E-07  0.25542974E-07  0.24698245E-07  0.23628266E-07
-  0.22345494E-07  0.20864267E-07  0.19200649E-07  0.17372264E-07  0.15398111E-07
-  0.13298372E-07  0.11094206E-07  0.88075432E-08  0.64608682E-08  0.40770010E-08
-  0.16788790E-08 -0.71066103E-09 -0.30690973E-08 -0.53744330E-08 -0.76053985E-08
- -0.97416452E-08 -0.11763929E-07 -0.13654278E-07 -0.15396156E-07 -0.16974594E-07
- -0.18376325E-07 -0.19589886E-07 -0.20605711E-07 -0.21416199E-07 -0.22015771E-07
- -0.22400896E-07 -0.22570106E-07 -0.22523988E-07 -0.22265159E-07 -0.21798218E-07
- -0.21129684E-07 -0.20267914E-07 -0.19223007E-07 -0.18006686E-07 -0.16632178E-07
- -0.15114066E-07 -0.13468142E-07 -0.11711246E-07 -0.98610957E-08 -0.79361089E-08
- -0.59552253E-08 -0.39377210E-08 -0.19030235E-08  0.12947253E-09  0.21405877E-08
-  0.41115363E-08  0.60240990E-08  0.78607894E-08  0.96050108E-08  0.11241205E-07
-  0.12754986E-07  0.14133267E-07  0.15364369E-07  0.16438116E-07  0.17345916E-07
-  0.18080829E-07  0.18637614E-07  0.19012761E-07  0.19204509E-07  0.19212846E-07
-  0.19039488E-07  0.18687849E-07  0.18162994E-07  0.17471570E-07  0.16621732E-07
-  0.15623051E-07  0.14486408E-07  0.13223881E-07  0.11848618E-07  0.10374701E-07
-  0.88170072E-08  0.71910591E-08  0.55128719E-08  0.37987983E-08  0.20653706E-08
-  0.32914233E-09 -0.13934677E-08 -0.30863295E-08 -0.47337509E-08 -0.63206208E-08
- -0.78325462E-08 -0.92559808E-08 -0.10578344E-07 -0.11788132E-07 -0.12875014E-07
- -0.13829917E-07 -0.14645103E-07 -0.15314224E-07 -0.15832370E-07 -0.16196103E-07
- -0.16403471E-07 -0.16454014E-07 -0.16348755E-07 -0.16090177E-07 -0.15682179E-07
- -0.15130034E-07 -0.14440317E-07 -0.13620840E-07 -0.12680557E-07 -0.11629478E-07
-   19.8421228800787      T
- Non local Part
-           0           2   1.03170241276447     
-   8.48191517218165        11.7757836767903        11.7757836767903     
-   16.3515625171536     
- Reciprocal Space Part
-  0.59618802E+02  0.58728804E+02  0.56074024E+02  0.51699804E+02  0.45680746E+02
-  0.38119274E+02  0.29143671E+02  0.18905623E+02  0.75773282E+01 -0.46517683E+01
- -0.17578547E+02 -0.30990019E+02 -0.44667277E+02 -0.58389527E+02 -0.71938095E+02
- -0.85100345E+02 -0.97673425E+02 -0.10946776E+03 -0.12031025E+03 -0.13004704E+03
- -0.13854596E+03 -0.14569837E+03 -0.15142064E+03 -0.15565502E+03 -0.15837002E+03
- -0.15956027E+03 -0.15924591E+03 -0.15747139E+03 -0.15430398E+03 -0.14983176E+03
- -0.14416132E+03 -0.13741514E+03 -0.12972880E+03 -0.12124795E+03 -0.11212524E+03
- -0.10251722E+03 -0.92581277E+02 -0.82472653E+02 -0.72341667E+02 -0.62331121E+02
- -0.52573985E+02 -0.43191382E+02 -0.34290898E+02 -0.25965259E+02 -0.18291368E+02
- -0.11329718E+02 -0.51241765E+01  0.29787571E+00  0.49250688E+01  0.87612564E+01
-  0.11824451E+02  0.14145521E+02  0.15766686E+02  0.16739863E+02  0.17124899E+02
-  0.16987748E+02  0.16398621E+02  0.15430172E+02  0.14155746E+02  0.12647730E+02
-  0.10976046E+02  0.92067952E+01  0.74011008E+01  0.56141435E+01  0.38944113E+01
-  0.22831646E+01  0.81411644E+00 -0.48667978E+00 -0.16007453E+01 -0.25169103E+01
- -0.32308862E+01 -0.37446987E+01 -0.40660062E+01 -0.42073286E+01 -0.41852143E+01
- -0.40193711E+01 -0.37317875E+01 -0.33458677E+01 -0.28856034E+01 -0.23748024E+01
- -0.18363896E+01 -0.12917960E+01 -0.76044515E+00 -0.25934295E+00  0.19722322E+00
-  0.59787806E+00  0.93424642E+00  0.12009418E+01  0.13954638E+01  0.15180138E+01
-  0.15712429E+01  0.15599426E+01  0.14906942E+01  0.13714899E+01  0.12113407E+01
-  0.10198828E+01  0.80699697E+00  0.58245003E+00  0.35557023E+00  0.13496271E+00
- Real Space Part
- -0.87257185E+03 -0.87217325E+03 -0.87097758E+03 -0.86898535E+03 -0.86619740E+03
- -0.86261493E+03 -0.85823952E+03 -0.85307319E+03 -0.84711839E+03 -0.84037811E+03
- -0.83285587E+03 -0.82455582E+03 -0.81548281E+03 -0.80564241E+03 -0.79504105E+03
- -0.78368604E+03 -0.77158570E+03 -0.75874942E+03 -0.74518776E+03 -0.73091251E+03
- -0.71593685E+03 -0.70027535E+03 -0.68394415E+03 -0.66696100E+03 -0.64934533E+03
- -0.63111840E+03 -0.61230331E+03 -0.59292512E+03 -0.57301089E+03 -0.55258976E+03
- -0.53169298E+03 -0.51035396E+03 -0.48860832E+03 -0.46649386E+03 -0.44405060E+03
- -0.42132076E+03 -0.39834870E+03 -0.37518093E+03 -0.35186599E+03 -0.32845440E+03
- -0.30499855E+03 -0.28155254E+03 -0.25817210E+03 -0.23491433E+03 -0.21183758E+03
- -0.18900121E+03 -0.16646531E+03 -0.14429049E+03 -0.12253758E+03 -0.10126731E+03
- -0.80539962E+02 -0.60415079E+02 -0.40951054E+02 -0.22204768E+02 -0.42311995E+01
-  0.12916980E+02  0.29189809E+02  0.44540445E+02  0.58925573E+02  0.72305804E+02
-  0.84646067E+02  0.95915987E+02  0.10609024E+03  0.11514887E+03  0.12307763E+03
-  0.12986821E+03  0.13551849E+03  0.14003271E+03  0.14342163E+03  0.14570263E+03
-  0.14689971E+03  0.14704353E+03  0.14617130E+03  0.14432667E+03  0.14155957E+03
-  0.13792593E+03  0.13348743E+03  0.12831116E+03  0.12246922E+03  0.11603831E+03
-  0.10909924E+03  0.10173648E+03  0.94037578E+02  0.86092680E+02  0.77993902E+02
-  0.69834817E+02  0.61709839E+02  0.53713688E+02  0.45940793E+02  0.38484762E+02
-  0.31437841E+02  0.24890391E+02  0.18930406E+02  0.13643042E+02  0.91101706E+01
-  0.54100403E+01  0.26168332E+01  0.79835325E+00  0.23427012E-01  0.00000000E+00
- Reciprocal Space Part
- -0.36489549E+02 -0.35864156E+02 -0.33998755E+02 -0.30925471E+02 -0.26697153E+02
- -0.21386360E+02 -0.15083959E+02 -0.78973858E+01  0.51413298E-01  0.86282977E+01
-  0.17689472E+02  0.27084188E+02  0.36657552E+02  0.46253383E+02  0.55717063E+02
-  0.64898313E+02  0.73653855E+02  0.81849887E+02  0.89364344E+02  0.96088881E+02
-  0.10193057E+03  0.10681323E+03  0.11067846E+03  0.11348624E+03  0.11521523E+03
-  0.11586261E+03  0.11544365E+03  0.11399089E+03  0.11155304E+03  0.10819353E+03
-  0.10398888E+03  0.99026864E+02  0.93404459E+02  0.87225735E+02  0.80599650E+02
-  0.73637846E+02  0.66452460E+02  0.59154022E+02  0.51849465E+02  0.44640290E+02
-  0.37620922E+02  0.30877278E+02  0.24485577E+02  0.18511398E+02  0.13009009E+02
-  0.80209530E+01  0.35779043E+01 -0.30122499E+00 -0.36089364E+01 -0.63485770E+01
- -0.85335736E+01 -0.10186497E+02 -0.11337984E+02 -0.12025554E+02 -0.12292345E+02
- -0.12185805E+02 -0.11756382E+02 -0.11056219E+02 -0.10137909E+02 -0.90533175E+01
- -0.78525080E+01 -0.65827802E+01 -0.52878430E+01 -0.40071309E+01 -0.27752721E+01
- -0.16217097E+01 -0.57047779E+00  0.35987548E+00  0.11562232E+01  0.18106666E+01
-  0.23202264E+01  0.26864349E+01  0.29148468E+01  0.30144856E+01  0.29972475E+01
-  0.28772789E+01  0.26703472E+01  0.23932227E+01  0.20630867E+01  0.16969795E+01
-  0.13113025E+01  0.92138094E+00  0.54109837E+00  0.18260423E+00 -0.14390035E+00
- -0.43029978E+00 -0.67062595E+00 -0.86104898E+00 -0.99980292E+00 -0.10870535E+01
- -0.11247164E+01 -0.11162365E+01 -0.10663359E+01 -0.98074332E+00 -0.86591280E+00
- -0.72874294E+00 -0.57630417E+00 -0.41558297E+00 -0.25324963E+00 -0.95455204E-01
- Real Space Part
-  0.63319797E+03  0.63291041E+03  0.63204781E+03  0.63061056E+03  0.62859924E+03
-  0.62601473E+03  0.62285817E+03  0.61913101E+03  0.61483503E+03  0.60997237E+03
-  0.60454559E+03  0.59855767E+03  0.59201211E+03  0.58491291E+03  0.57726472E+03
-  0.56907280E+03  0.56034314E+03  0.55108251E+03  0.54129849E+03  0.53099960E+03
-  0.52019530E+03  0.50889609E+03  0.49711358E+03  0.48486054E+03  0.47215095E+03
-  0.45900011E+03  0.44542463E+03  0.43144254E+03  0.41707331E+03  0.40233788E+03
-  0.38725874E+03  0.37185991E+03  0.35616701E+03  0.34020723E+03  0.32400934E+03
-  0.30760369E+03  0.29102220E+03  0.27429832E+03  0.25746694E+03  0.24056440E+03
-  0.22362837E+03  0.20669777E+03  0.18981266E+03  0.17301414E+03  0.15634416E+03
-  0.13984541E+03  0.12356113E+03  0.10753493E+03  0.91810566E+02  0.76431735E+02
-  0.61441833E+02  0.46883707E+02  0.32799393E+02  0.19229849E+02  0.62146659E+01
- -0.62082134E+01 -0.18002788E+02 -0.29135292E+02 -0.39574487E+02 -0.49291950E+02
- -0.58262356E+02 -0.66463744E+02 -0.73877778E+02 -0.80489982E+02 -0.86289957E+02
- -0.91271581E+02 -0.95433167E+02 -0.98777602E+02 -0.10131245E+03 -0.10305002E+03
- -0.10400739E+03 -0.10420642E+03 -0.10367366E+03 -0.10244030E+03 -0.10054203E+03
- -0.98018889E+02 -0.94915012E+02 -0.91278431E+02 -0.87160797E+02 -0.82617056E+02
- -0.77705128E+02 -0.72485556E+02 -0.67021113E+02 -0.61376433E+02 -0.55617588E+02
- -0.49811699E+02 -0.44026502E+02 -0.38329965E+02 -0.32789855E+02 -0.27473361E+02
- -0.22446704E+02 -0.17774762E+02 -0.13520724E+02 -0.97457493E+01 -0.65086493E+01
- -0.38656440E+01 -0.18700414E+01 -0.57059033E+00 -0.16714955E-01  0.00000000E+00
- Non local Part
-           1           2   1.03170241276447     
-   2.65859946877321        4.88238126795342        4.88238126795342     
-   8.98435195357541     
- Reciprocal Space Part
-  0.00000000E+00  0.38861820E+01  0.76566506E+01  0.11198191E+02  0.14402530E+02
-  0.17168669E+02  0.19405054E+02  0.21031535E+02  0.21981079E+02  0.22201184E+02
-  0.21654974E+02  0.20321960E+02  0.18198431E+02  0.15297488E+02  0.11648712E+02
-  0.72974833E+01  0.23039596E+01 -0.32582469E+01 -0.93036735E+01 -0.15736848E+02
- -0.22454324E+02 -0.29346862E+02 -0.36301710E+02 -0.43204929E+02 -0.49943706E+02
- -0.56408622E+02 -0.62495800E+02 -0.68108907E+02 -0.73160964E+02 -0.77575922E+02
- -0.81289979E+02 -0.84252614E+02 -0.86427318E+02 -0.87792019E+02 -0.88339191E+02
- -0.88075654E+02 -0.87022084E+02 -0.85212244E+02 -0.82691957E+02 -0.79517866E+02
- -0.75756000E+02 -0.71480183E+02 -0.66770345E+02 -0.61710747E+02 -0.56388189E+02
- -0.50890222E+02 -0.45303418E+02 -0.39711722E+02 -0.34194931E+02 -0.28827322E+02
- -0.23676453E+02 -0.18802168E+02 -0.14255806E+02 -0.10079632E+02 -0.63064936E+01
- -0.29596904E+01 -0.53068427E-01  0.24086920E+01  0.44295991E+01  0.60217087E+01
-  0.72043400E+01  0.80031754E+01  0.84492707E+01  0.85780039E+01  0.84279913E+01
-  0.80399981E+01  0.74558696E+01  0.67175093E+01  0.58659233E+01  0.49403528E+01
-  0.39775094E+01  0.30109262E+01  0.20704331E+01  0.11817624E+01  0.36628567E+00
- -0.35911990E+00 -0.98208097E+00 -0.14946211E+01 -0.18929483E+01 -0.21771504E+01
- -0.23508116E+01 -0.24205674E+01 -0.23956133E+01 -0.22871843E+01 -0.21080214E+01
- -0.18718417E+01 -0.15928247E+01 -0.12851305E+01 -0.96245910E+00 -0.63766179E+00
- -0.32241090E+00 -0.26933951E-01  0.24018535E+00  0.47213831E+00  0.66395584E+00
-  0.81250966E+00  0.91645487E+00  0.97612004E+00  0.99335246E+00  0.97132649E+00
- Real Space Part
-  0.00000000E+00 -0.22186814E+02 -0.44301839E+02 -0.66273522E+02 -0.88030777E+02
- -0.10950322E+03 -0.13062140E+03 -0.15131703E+03 -0.17152321E+03 -0.19117468E+03
- -0.21020799E+03 -0.22856176E+03 -0.24617690E+03 -0.26299679E+03 -0.27896751E+03
- -0.29403802E+03 -0.30816039E+03 -0.32128994E+03 -0.33338548E+03 -0.34440943E+03
- -0.35432799E+03 -0.36311136E+03 -0.37073379E+03 -0.37717380E+03 -0.38241426E+03
- -0.38644250E+03 -0.38925046E+03 -0.39083470E+03 -0.39119654E+03 -0.39034209E+03
- -0.38828229E+03 -0.38503293E+03 -0.38061467E+03 -0.37505301E+03 -0.36837826E+03
- -0.36062551E+03 -0.35183450E+03 -0.34204958E+03 -0.33131954E+03 -0.31969747E+03
- -0.30724063E+03 -0.29401017E+03 -0.28007097E+03 -0.26549136E+03 -0.25034283E+03
- -0.23469974E+03 -0.21863898E+03 -0.20223959E+03 -0.18558239E+03 -0.16874958E+03
- -0.15182426E+03 -0.13489000E+03 -0.11803038E+03 -0.10132845E+03 -0.84866250E+02
- -0.68724282E+02 -0.52980979E+02 -0.37712173E+02 -0.22990566E+02 -0.88851973E+01
-  0.45390663E+01  0.17222034E+02  0.29108671E+02  0.40149550E+02  0.50301273E+02
-  0.59526856E+02  0.67796071E+02  0.75085739E+02  0.81379975E+02  0.86670373E+02
-  0.90956134E+02  0.94244139E+02  0.96548944E+02  0.97892719E+02  0.98305121E+02
-  0.97823113E+02  0.96490698E+02  0.94358601E+02  0.91483927E+02  0.87929701E+02
-  0.83764422E+02  0.79061549E+02  0.73898935E+02  0.68358280E+02  0.62524490E+02
-  0.56485105E+02  0.50329625E+02  0.44148922E+02  0.38034576E+02  0.32078283E+02
-  0.26371234E+02  0.21003526E+02  0.16063609E+02  0.11637728E+02  0.78094126E+01
-  0.46590409E+01  0.22633368E+01  0.69369210E+00  0.17747648E-01  0.00000000E+00
- Reciprocal Space Part
-  0.00000000E+00 -0.17868362E+01 -0.35144269E+01 -0.51248277E+01 -0.65626676E+01
- -0.77763629E+01 -0.87192468E+01 -0.93505888E+01 -0.96364809E+01 -0.95505728E+01
- -0.90746384E+01 -0.81989629E+01 -0.69225426E+01 -0.52530936E+01 -0.32068705E+01
- -0.80830207E+00  0.19105496E+01  0.49106895E+01  0.81470351E+01  0.11569385E+02
-  0.15123488E+02  0.18752190E+02  0.22396628E+02  0.25997448E+02  0.29496018E+02
-  0.32835608E+02  0.35962514E+02  0.38827099E+02  0.41384736E+02  0.43596618E+02
-  0.45430445E+02  0.46860950E+02  0.47870266E+02  0.48448142E+02  0.48591976E+02
-  0.48306705E+02  0.47604523E+02  0.46504469E+02  0.45031872E+02  0.43217686E+02
-  0.41097721E+02  0.38711805E+02  0.36102874E+02  0.33316045E+02  0.30397658E+02
-  0.27394336E+02  0.24352070E+02  0.21315355E+02  0.18326389E+02  0.15424354E+02
-  0.12644790E+02  0.10019079E+02  0.75740326E+01  0.53316035E+01  0.33087123E+01
-  0.15171909E+01 -0.36159418E-01 -0.13494048E+01 -0.24252171E+01 -0.32705252E+01
- -0.38960921E+01 -0.43160309E+01 -0.45472742E+01 -0.46090120E+01 -0.45221135E+01
- -0.43085463E+01 -0.39908088E+01 -0.35913863E+01 -0.31322454E+01 -0.26343746E+01
- -0.21173800E+01 -0.15991441E+01 -0.10955499E+01 -0.62027500E+00 -0.18465580E+00
-  0.20237976E+00  0.53431322E+00  0.80697500E+00  0.10184279E+01  0.11688016E+01
-  0.12600861E+01  0.12958921E+01  0.12811875E+01  0.12220191E+01  0.11252269E+01
-  0.99816176E+00  0.84841124E+00  0.68354309E+00  0.51087098E+00  0.33724795E+00
-  0.16889148E+00  0.11242749E-01 -0.13113830E+00 -0.25464171E+00 -0.35664077E+00
- -0.43549155E+00 -0.49050126E+00 -0.52186870E+00 -0.53060095E+00 -0.51841055E+00
- Real Space Part
-  0.00000000E+00  0.12161252E+02  0.24283469E+02  0.36327742E+02  0.48255417E+02
-  0.60028220E+02  0.71608383E+02  0.82958767E+02  0.94042991E+02  0.10482555E+03
-  0.11527193E+03  0.12534873E+03  0.13502381E+03  0.14426635E+03  0.15304699E+03
-  0.16133795E+03  0.16911311E+03  0.17634814E+03  0.18302057E+03  0.18910990E+03
-  0.19459770E+03  0.19946767E+03  0.20370573E+03  0.20730009E+03  0.21024135E+03
-  0.21252251E+03  0.21413905E+03  0.21508898E+03  0.21537287E+03  0.21499392E+03
-  0.21395789E+03  0.21227322E+03  0.20995096E+03  0.20700481E+03  0.20345105E+03
-  0.19930856E+03  0.19459875E+03  0.18934552E+03  0.18357519E+03  0.17731641E+03
-  0.17060007E+03  0.16345921E+03  0.15592887E+03  0.14804598E+03  0.13984918E+03
-  0.13137868E+03  0.12267606E+03  0.11378408E+03  0.10474648E+03  0.95607747E+02
-  0.86412883E+02  0.77207157E+02  0.68035844E+02  0.58943963E+02  0.49976000E+02
-  0.41175622E+02  0.32585400E+02  0.24246514E+02  0.16198468E+02  0.84788075E+01
-  0.11228377E+01 -0.58366451E+01 -0.12369614E+02 -0.18449055E+02 -0.24051197E+02
- -0.29155721E+02 -0.33745943E+02 -0.37808973E+02 -0.41335852E+02 -0.44321651E+02
- -0.46765541E+02 -0.48670833E+02 -0.50044982E+02 -0.50899549E+02 -0.51250136E+02
- -0.51116295E+02 -0.50521380E+02 -0.49492378E+02 -0.48059729E+02 -0.46257077E+02
- -0.44121031E+02 -0.41690892E+02 -0.39008342E+02 -0.36117160E+02 -0.33062867E+02
- -0.29892426E+02 -0.26653874E+02 -0.23396010E+02 -0.20168034E+02 -0.17019231E+02
- -0.13998631E+02 -0.11154698E+02 -0.85350264E+01 -0.61860453E+01 -0.41527388E+01
- -0.24784108E+01 -0.12044157E+01 -0.36926989E+00 -0.93979993E-02  0.00000000E+00
- PAW radial sets
-         351  0.989218471734280     
-(5E20.12)                                
- augmentation charges (non sperical)
- -0.118612820244E+00 -0.166184190184E+00 -0.532145144881E-01 -0.101222164724E+00 -0.166184190184E+00
- -0.232848406670E+00 -0.743582353105E-01 -0.141431561143E+00 -0.532145144881E-01 -0.743582353105E-01
- -0.179689550405E-01 -0.343505440708E-01 -0.101222164724E+00 -0.141431561143E+00 -0.343505440708E-01
- -0.655142723317E-01
- uccopancies in atom
-  0.200000000235E+01  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.666666668254E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00
- grid
-  0.353278105438E-04  0.364765828105E-04  0.376627102856E-04  0.388874076671E-04  0.401519291522E-04
-  0.414575697215E-04  0.428056664648E-04  0.441975999512E-04  0.456347956421E-04  0.471187253514E-04
-  0.486509087530E-04  0.502329149365E-04  0.518663640144E-04  0.535529287814E-04  0.552943364272E-04
-  0.570923703053E-04  0.589488717596E-04  0.608657420098E-04  0.628449440985E-04  0.648885049016E-04
-  0.669985172040E-04  0.691771418426E-04  0.714266099194E-04  0.737492250864E-04  0.761473659044E-04
-  0.786234882792E-04  0.811801279764E-04  0.838199032186E-04  0.865455173661E-04  0.893597616862E-04
-  0.922655182109E-04  0.952657626888E-04  0.983635676325E-04  0.101562105465E-03  0.104864651768E-03
-  0.108274588638E-03  0.111795408149E-03  0.115430715926E-03  0.119184234844E-03  0.123059808833E-03
-  0.127061406819E-03  0.131193126789E-03  0.135459199986E-03  0.139863995240E-03  0.144412023447E-03
-  0.149107942186E-03  0.153956560487E-03  0.158962843759E-03  0.164131918874E-03  0.169469079417E-03
-  0.174979791106E-03  0.180669697392E-03  0.186544625235E-03  0.192610591076E-03  0.198873806993E-03
-  0.205340687067E-03  0.212017853948E-03  0.218912145639E-03  0.226030622496E-03  0.233380574462E-03
-  0.240969528530E-03  0.248805256452E-03  0.256895782699E-03  0.265249392676E-03  0.273874641209E-03
-  0.282780361308E-03  0.291975673207E-03  0.301469993709E-03  0.311273045829E-03  0.321394868748E-03
-  0.331845828098E-03  0.342636626573E-03  0.353778314896E-03  0.365282303127E-03  0.377160372357E-03
-  0.389424686766E-03  0.402087806084E-03  0.415162698451E-03  0.428662753701E-03  0.442601797068E-03
-  0.456994103352E-03  0.471854411533E-03  0.487197939863E-03  0.503040401457E-03  0.519398020380E-03
-  0.536287548263E-03  0.553726281459E-03  0.571732078754E-03  0.590323379658E-03  0.609519223288E-03
-  0.629339267864E-03  0.649803810846E-03  0.670933809712E-03  0.692750903429E-03  0.715277434606E-03
-  0.738536472381E-03  0.762551836040E-03  0.787348119413E-03  0.812950716063E-03  0.839385845286E-03
-  0.866680578963E-03  0.894862869287E-03  0.923961577387E-03  0.954006502881E-03  0.985028414399E-03
-  0.101705908109E-02  0.105013130516E-02  0.108427895544E-02  0.111953700213E-02  0.115594155253E-02
-  0.119352988810E-02  0.123234050257E-02  0.127241314140E-02  0.131378884247E-02  0.135650997813E-02
-  0.140062029854E-02  0.144616497653E-02  0.149319065382E-02  0.154174548883E-02  0.159187920594E-02
-  0.164364314647E-02  0.169709032120E-02  0.175227546473E-02  0.180925509145E-02  0.186808755348E-02
-  0.192883310041E-02  0.199155394099E-02  0.205631430683E-02  0.212318051821E-02  0.219222105197E-02
-  0.226350661166E-02  0.233711019991E-02  0.241310719324E-02  0.249157541920E-02  0.257259523611E-02
-  0.265624961535E-02  0.274262422631E-02  0.283180752413E-02  0.292389084032E-02  0.301896847624E-02
-  0.311713779968E-02  0.321849934462E-02  0.332315691413E-02  0.343121768671E-02  0.354279232604E-02
-  0.365799509430E-02  0.377694396919E-02  0.389976076474E-02  0.402657125610E-02  0.415750530828E-02
-  0.429269700920E-02  0.443228480697E-02  0.457641165169E-02  0.472522514185E-02  0.487887767547E-02
-  0.503752660617E-02  0.520133440431E-02  0.537046882339E-02  0.554510307185E-02  0.572541599040E-02
-  0.591159223525E-02  0.610382246712E-02  0.630230354657E-02  0.650723873558E-02  0.671883790569E-02
-  0.693731775293E-02  0.716290201977E-02  0.739582172419E-02  0.763631539635E-02  0.788462932276E-02
-  0.814101779859E-02  0.840574338805E-02  0.867907719326E-02  0.896129913194E-02  0.925269822400E-02
-  0.955357288758E-02  0.986423124464E-02  0.101849914365E-01  0.105161819495E-01  0.108581419519E-01
-  0.112112216404E-01  0.115757825996E-01  0.119521981717E-01  0.123408538391E-01  0.127421476193E-01
-  0.131564904721E-01  0.135843067208E-01  0.140260344867E-01  0.144821261375E-01  0.149530487510E-01
-  0.154392845931E-01  0.159413316118E-01  0.164597039470E-01  0.169949324574E-01  0.175475652638E-01
-  0.181181683104E-01  0.187073259445E-01  0.193156415151E-01  0.199437379906E-01  0.205922585965E-01
-  0.212618674747E-01  0.219532503631E-01  0.226671152982E-01  0.234041933402E-01  0.241652393213E-01
-  0.249510326191E-01  0.257623779547E-01  0.266001062165E-01  0.274650753115E-01  0.283581710436E-01
-  0.292803080210E-01  0.302324305924E-01  0.312155138146E-01  0.322305644506E-01  0.332786220011E-01
-  0.343607597686E-01  0.354780859567E-01  0.366317448050E-01  0.378229177610E-01  0.390528246900E-01
-  0.403227251240E-01  0.416339195521E-01  0.429877507520E-01  0.443856051652E-01  0.458289143166E-01
-  0.473191562810E-01  0.488578571964E-01  0.504465928270E-01  0.520869901769E-01  0.537807291563E-01
-  0.555295443019E-01  0.573352265534E-01  0.591996250870E-01  0.611246492098E-01  0.631122703148E-01
-  0.651645238996E-01  0.672835116512E-01  0.694714035982E-01  0.717304403333E-01  0.740629353074E-01
-  0.764712771991E-01  0.789579323611E-01  0.815254473456E-01  0.841764515121E-01  0.869136597208E-01
-  0.897398751118E-01  0.926579919768E-01  0.956709987225E-01  0.987819809310E-01  0.101994124520E+00
-  0.105310719005E+00  0.108735160869E+00  0.112270957040E+00  0.115921728481E+00  0.119691213902E+00
-  0.123583273585E+00  0.127601893339E+00  0.131751188583E+00  0.136035408556E+00  0.140458940676E+00
-  0.145026315024E+00  0.149742208992E+00  0.154611452068E+00  0.159639030781E+00  0.164830093811E+00
-  0.170189957261E+00  0.175724110099E+00  0.181438219781E+00  0.187338138056E+00  0.193429906954E+00
-  0.199719764979E+00  0.206214153496E+00  0.212919723327E+00  0.219843341560E+00  0.226992098585E+00
-  0.234373315355E+00  0.241994550880E+00  0.249863609972E+00  0.257988551235E+00  0.266377695319E+00
-  0.275039633439E+00  0.283983236179E+00  0.293217662568E+00  0.302752369466E+00  0.312597121246E+00
-  0.322761999795E+00  0.333257414835E+00  0.344094114590E+00  0.355283196787E+00  0.366836120023E+00
-  0.378764715502E+00  0.391081199148E+00  0.403798184116E+00  0.416928693710E+00  0.430486174720E+00
-  0.444484511190E+00  0.458938038641E+00  0.473861558747E+00  0.489270354497E+00  0.505180205845E+00
-  0.521607405869E+00  0.538568777456E+00  0.556081690535E+00  0.574164079857E+00  0.592834463369E+00
-  0.612111961177E+00  0.632016315122E+00  0.652567909002E+00  0.673787789445E+00  0.695697687463E+00
-  0.718320040705E+00  0.741678016440E+00  0.765795535274E+00  0.790697295655E+00  0.816408799161E+00
-  0.842956376619E+00  0.870367215068E+00  0.898669385601E+00  0.927891872115E+00  0.958064600989E+00
-  0.989218471734E+00  0.102138538864E+01  0.105459829343E+01  0.108889119903E+01  0.112429922437E+01
-  0.116085863037E+01  0.119860685704E+01  0.123758256187E+01  0.127782565939E+01  0.131937736205E+01
-  0.136228022242E+01  0.140657817678E+01  0.145231659010E+01  0.149954230253E+01  0.154830367731E+01
-  0.159865065035E+01  0.165063478135E+01  0.170430930661E+01  0.175972919353E+01  0.181695119691E+01
-  0.187603391710E+01  0.193703785995E+01  0.200002549884E+01  0.206506133861E+01  0.213221198164E+01
-  0.220154619607E+01  0.227313498618E+01  0.234705166515E+01  0.242337193012E+01  0.250217393971E+01
-  0.258353839407E+01
- aepotential
-  0.249296947974E+05  0.247076561026E+05  0.244443313547E+05  0.241414253640E+05  0.238012309740E+05
-  0.234259813678E+05  0.230181043480E+05  0.225809961616E+05  0.221166800594E+05  0.216286109490E+05
-  0.211196171324E+05  0.205927134571E+05  0.200508445329E+05  0.194969963033E+05  0.189339771311E+05
-  0.183645026186E+05  0.177912890443E+05  0.172167064663E+05  0.166431270260E+05  0.160726862779E+05
-  0.155073402250E+05  0.149488848247E+05  0.143989117768E+05  0.138588393857E+05  0.133298963598E+05
-  0.128131392341E+05  0.123094542557E+05  0.118195679465E+05  0.113440551010E+05  0.108833506728E+05
-  0.104377601662E+05  0.100074714858E+05  0.959256622382E+04  0.919303113611E+04  0.880876923400E+04
-  0.843961046952E+04  0.808532192877E+04  0.774561726178E+04  0.742016531312E+04  0.710859980992E+04
-  0.681052312014E+04  0.652551855157E+04  0.625315022209E+04  0.599297269034E+04  0.574453507071E+04
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- core charge-density
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-  0.286674509825E-08
- kinetic energy-density
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-  0.127809824020E+02  0.131014661587E+02  0.134365246352E+02  0.137869037259E+02  0.141533910827E+02
-  0.145368181700E+02  0.149380606607E+02  0.153580481103E+02  0.157977592006E+02  0.162582301660E+02
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-  0.798066090433E+02  0.836980910427E+02  0.878083249418E+02  0.921501355979E+02  0.967371238079E+02
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-  0.849760803098E+04  0.887497515215E+04  0.926368732206E+04  0.966357873788E+04  0.100744252544E+05
-  0.104959398994E+05  0.109277683923E+05  0.113694846547E+05  0.118205863594E+05  0.122804905999E+05
-  0.127485296775E+05  0.132239471319E+05  0.137058940235E+05  0.141934255844E+05  0.146854982713E+05
-  0.151809673402E+05  0.156785850245E+05  0.161769993384E+05  0.166747537999E+05  0.171702877851E+05
-  0.176619381795E+05  0.181479417092E+05  0.186264388693E+05  0.190954787135E+05  0.195530252077E+05
-  0.199969649781E+05  0.204251165206E+05  0.208352408440E+05  0.212250539761E+05  0.215922406971E+05
-  0.219344702466E+05  0.222494132725E+05  0.225347605700E+05  0.227882431008E+05  0.230076533887E+05
-  0.231908681093E+05  0.233358716618E+05  0.234407805422E+05  0.235038681649E+05  0.235235900533E+05
-  0.234986087273E+05  0.234278183452E+05  0.233103682573E+05  0.231456854657E+05  0.229334951930E+05
-  0.226738393464E+05  0.223670922687E+05  0.220139733481E+05  0.216155560262E+05  0.211732727643E+05
-  0.206889155309E+05  0.201646315262E+05  0.196029137234E+05  0.190065861750E+05  0.183787838063E+05
-  0.177229268159E+05  0.170426897439E+05  0.163419655306E+05  0.156248249789E+05  0.148954722996E+05
-  0.141581974366E+05  0.134173260145E+05  0.126771691922E+05  0.119419712654E+05  0.112158605109E+05
-  0.105028006708E+05  0.980654494715E+04  0.913059233055E+04  0.847814609089E+04  0.785207437181E+04
-  0.725487344241E+04  0.668863511465E+04  0.615502070274E+04  0.565524418908E+04  0.519006674861E+04
-  0.475980360345E+04  0.436434269355E+04  0.400317323797E+04  0.367542134980E+04  0.337988976738E+04
-  0.311509951930E+04  0.287933230868E+04  0.267067322820E+04  0.248705367813E+04  0.232629416860E+04
-  0.218614663490E+04  0.206433550064E+04  0.195859682514E+04  0.186671473352E+04  0.178655448544E+04
-  0.171609162157E+04  0.165343661643E+04  0.159685503183E+04  0.154478263373E+04  0.149583588863E+04
-  0.144881771439E+04  0.140271881257E+04  0.135671510542E+04  0.131016154370E+04  0.126258277404E+04
-  0.121366142449E+04  0.116322423992E+04  0.111122677010E+04  0.105773711321E+04  0.100291904396E+04
-  0.947015115197E+03  0.890329984746E+03  0.833214293651E+03  0.776049439334E+03  0.719233318915E+03
-  0.663167296841E+03  0.608244410857E+03  0.554838974842E+03  0.503297365412E+03  0.453930342998E+03
-  0.407006607762E+03  0.362747812430E+03  0.321325009274E+03  0.282856892955E+03  0.247409239962E+03
-  0.214996579478E+03  0.185585236387E+03  0.159098170048E+03  0.135421626809E+03  0.114413852193E+03
-  0.959157052909E+02  0.797613940556E+02  0.657850483488E+02  0.538188496239E+02  0.436847852099E+02
-  0.351899899383E+02  0.281331189963E+02  0.223174718914E+02  0.175614959268E+02  0.137029350510E+02
-  0.105987314150E+02  0.812353702200E+01  0.616817828814E+01  0.463832179287E+01  0.345324799301E+01
-  0.254463529365E+01  0.185531917238E+01  0.133803581425E+01  0.954179117826E+00  0.672602600260E+00
-  0.468493246228E+00  0.322336920783E+00  0.218987948819E+00  0.146848889647E+00  0.971612490355E-01
-  0.634035384763E-01  0.407898120808E-01  0.258595430908E-01  0.161483043720E-01  0.992815188083E-02
-  0.600670032098E-02  0.357447468542E-02  0.209108518893E-02  0.120193474515E-02  0.678419162901E-03
-  0.375814762046E-03  0.204197625257E-03  0.108758556747E-03  0.567464770105E-04  0.289864948733E-04
-  0.144858436153E-04  0.707756608346E-05  0.337836787752E-05  0.157431967128E-05  0.715666075556E-06
-  0.317114132527E-06
- mkinetic energy-density pseudized
-  0.246124888537E-05  0.262391872705E-05  0.279733980862E-05  0.298222270529E-05  0.317932495590E-05
-  0.338945416684E-05  0.361347132112E-05  0.385229430620E-05  0.410690167493E-05  0.437833665502E-05
-  0.466771142364E-05  0.497621166438E-05  0.530510142550E-05  0.565572829925E-05  0.602952894345E-05
-  0.642803496809E-05  0.685287921091E-05  0.730580242782E-05  0.778866042541E-05  0.830343166499E-05
-  0.885222536910E-05  0.943729016382E-05  0.100610232923E-04  0.107259804372E-04  0.114348861924E-04
-  0.121906452265E-04  0.129963541849E-04  0.138553143773E-04  0.147710453050E-04  0.157472990816E-04
-  0.167880758067E-04  0.178976399559E-04  0.190805378543E-04  0.203416163043E-04  0.216860424450E-04
-  0.231193249240E-04  0.246473364685E-04  0.262763379479E-04  0.280130040275E-04  0.298644505170E-04
-  0.318382635266E-04  0.339425305504E-04  0.361858736043E-04  0.385774845531E-04  0.411271627738E-04
-  0.438453553070E-04  0.467431996630E-04  0.498325694557E-04  0.531261230543E-04  0.566373554487E-04
-  0.603806535444E-04  0.643713551105E-04  0.686258116250E-04  0.731614552728E-04  0.779968703717E-04
-  0.831518695202E-04  0.886475747764E-04  0.945065042035E-04  0.100752664135E-03  0.107411647536E-03
-  0.114510738871E-03  0.122079025894E-03  0.130147518834E-03  0.138749277455E-03  0.147919546515E-03
-  0.157695900175E-03  0.168118395953E-03  0.179229738859E-03  0.191075456367E-03  0.203704084960E-03
-  0.217167368999E-03  0.231520472741E-03  0.246822206364E-03  0.263135266932E-03  0.280526495285E-03
-  0.299067149912E-03  0.318833198917E-03  0.339905631285E-03  0.362370788723E-03  0.386320719425E-03
-  0.411853555224E-03  0.439073913670E-03  0.468093326673E-03  0.499030697487E-03  0.532012787889E-03
-  0.567174737555E-03  0.604660617766E-03  0.644624021702E-03  0.687228693756E-03  0.732649200428E-03
-  0.781071645568E-03  0.832694432884E-03  0.887729078840E-03  0.946401079282E-03  0.100895083333E-02
-  0.107563462835E-02  0.114672568997E-02  0.122251530154E-02  0.130331399757E-02  0.138945283600E-02
-  0.148128475454E-02  0.157918601675E-02  0.168355775354E-02  0.179482760663E-02  0.191345148057E-02
-  0.203991541061E-02  0.217473755390E-02  0.231847031234E-02  0.247170259569E-02  0.263506223425E-02
-  0.280921855092E-02  0.299488510327E-02  0.319282260676E-02  0.340384205113E-02  0.362880802269E-02
-  0.386864224621E-02  0.412432736067E-02  0.439691094468E-02  0.468750980769E-02  0.499731456482E-02
-  0.532759451388E-02  0.567970283464E-02  0.605508213156E-02  0.645527034270E-02  0.688190703890E-02
-  0.733674013923E-02  0.782163306985E-02  0.833857239587E-02  0.888967595726E-02  0.947720154207E-02
-  0.101035561326E-01  0.107713057620E-01  0.114831860220E-01  0.122421132645E-01  0.130511965425E-01
-  0.139137503401E-01  0.148333081420E-01  0.158136368999E-01  0.168587524534E-01  0.179729359683E-01
-  0.191607514608E-01  0.204270644777E-01  0.217770620094E-01  0.232162737168E-01  0.247505945587E-01
-  0.263863089121E-01  0.281301162830E-01  0.299891587134E-01  0.319710499956E-01  0.340839068117E-01
-  0.363363819276E-01  0.387376995728E-01  0.412976931539E-01  0.440268454506E-01  0.469363314614E-01
-  0.500380640699E-01  0.533447427184E-01  0.568699052850E-01  0.606279833752E-01  0.646343612502E-01
-  0.689054386321E-01  0.734586976370E-01  0.783127741083E-01  0.834875336360E-01  0.890041525683E-01
-  0.948852043423E-01  0.101154751478E+00  0.107838443608E+00  0.114963621928E+00  0.122559430498E+00
-  0.130656934825E+00  0.139289248207E+00  0.148491666340E+00  0.158301810719E+00  0.168759781404E+00
-  0.179908319753E+00  0.191792981758E+00  0.204462322680E+00  0.217968093682E+00  0.232365451255E+00
-  0.247713180229E+00  0.264073931251E+00  0.281514473635E+00  0.300105964567E+00  0.319924235688E+00
-  0.341050098153E+00  0.363569667326E+00  0.387574708325E+00  0.413163003732E+00  0.440438744815E+00
-  0.469512947739E+00  0.500503896272E+00  0.533537612614E+00  0.568748358052E+00  0.606279165231E+00
-  0.646282403941E+00  0.688920382391E+00  0.734365986076E+00  0.782803356419E+00  0.834428611485E+00
-  0.889450611177E+00  0.948091769412E+00  0.101058891592E+01  0.107719421035E+01  0.114817611159E+01
-  0.122382040517E+01  0.130443129174E+01  0.139033253996E+01  0.148186870671E+01  0.157940642816E+01
-  0.168333578488E+01  0.179407174448E+01  0.191205568510E+01  0.203775700321E+01  0.217167480907E+01
-  0.231433971309E+01  0.246631570642E+01  0.262820213858E+01  0.280063579506E+01  0.298429307738E+01
-  0.317989228767E+01  0.338819601939E+01  0.361001365538E+01  0.384620397342E+01  0.409767785897E+01
-  0.436540112340E+01  0.465039742506E+01  0.495375128900E+01  0.527661121944E+01  0.562019289718E+01
-  0.598578245173E+01  0.637473979546E+01  0.678850200382E+01  0.722858672211E+01  0.769659557535E+01
-  0.819421755303E+01  0.872323233508E+01  0.928551351943E+01  0.988303170455E+01  0.105178573724E+02
-  0.111921635088E+02  0.119082278868E+02  0.126684349296E+02  0.134752770548E+02  0.143313553888E+02
-  0.152393797229E+02  0.162021675676E+02  0.172226421397E+02  0.183038290954E+02  0.194488518008E+02
-  0.206609249026E+02  0.219433459362E+02  0.232994846736E+02  0.247327698867E+02  0.262466731579E+02
-  0.278446893409E+02  0.295303132271E+02  0.313070119380E+02  0.331781925189E+02  0.351471641660E+02
-  0.372170944806E+02  0.393909591027E+02  0.416714840392E+02  0.440610799768E+02  0.465617678440E+02
-  0.491750948813E+02  0.519020404840E+02  0.547429111112E+02  0.576972236099E+02  0.607635763904E+02
-  0.639395080244E+02  0.672213430148E+02  0.706040247369E+02  0.740809358673E+02  0.776437070298E+02
-  0.812820149008E+02  0.849833716541E+02  0.887329083984E+02  0.925131561972E+02  0.963038293663E+02
-  0.100081617042E+03  0.103819990523E+03  0.107489035592E+03  0.111055320957E+03  0.114481816082E+03
-  0.117727873934E+03  0.120749296619E+03  0.123498504282E+03  0.125924830007E+03  0.127974965523E+03
-  0.129593584125E+03  0.130724168028E+03  0.131310066960E+03  0.131295812806E+03  0.130628710801E+03
-  0.129260720552E+03  0.127150629186E+03  0.124266503311E+03  0.120588385239E+03  0.116111171158E+03
-  0.110847573781E+03  0.104831028760E+03  0.981183527514E+02  0.907919018702E+02  0.829609139133E+02
-  0.747616492584E+02  0.663558786143E+02  0.579272084376E+02  0.496746974883E+02  0.418032150738E+02
-  0.345100415462E+02  0.279673372239E+02  0.223003334013E+02  0.175614569257E+02  0.137029350510E+02
-  0.105987314150E+02  0.812353702200E+01  0.616817828814E+01  0.463832179287E+01  0.345324799301E+01
-  0.254463529365E+01  0.185531917238E+01  0.133803581425E+01  0.954179117826E+00  0.672602600260E+00
-  0.468493246228E+00  0.322336920783E+00  0.218987948819E+00  0.146848889647E+00  0.971612490355E-01
-  0.634035384763E-01  0.407898120808E-01  0.258595430908E-01  0.161483043720E-01  0.992815188083E-02
-  0.600670032098E-02  0.357447468542E-02  0.209108518893E-02  0.120193474515E-02  0.678419162901E-03
-  0.375814762046E-03  0.204197625257E-03  0.108758556747E-03  0.567464770105E-04  0.289864948733E-04
-  0.144858436153E-04  0.707756608346E-05  0.337836787752E-05  0.157431967128E-05  0.715666075556E-06
-  0.317114132527E-06
- local pseudopotential core
- -0.170419537102E+03 -0.170420949717E+03 -0.170422317842E+03 -0.170423642879E+03 -0.170424926184E+03
- -0.170426169071E+03 -0.170427372814E+03 -0.170428538644E+03 -0.170429667756E+03 -0.170430761305E+03
- -0.170431820413E+03 -0.170432846163E+03 -0.170433839605E+03 -0.170434801757E+03 -0.170435733605E+03
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- pspotential valence only
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- core charge-density (pseudized)
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-  0.283644316716E+00  0.255975805584E+00  0.229969207138E+00  0.205658740221E+00  0.183057753088E+00
-  0.162160440109E+00
- ae wavefunction
-  0.723210491956E-03  0.746578583770E-03  0.770700951993E-03  0.795601892227E-03  0.821306479369E-03
-  0.847840592488E-03  0.875230940375E-03  0.903505087772E-03  0.932691482807E-03  0.962819484716E-03
-  0.993919392949E-03  0.102602247680E-02  0.105916100625E-02  0.109336828344E-02  0.112867867548E-02
-  0.116512764795E-02  0.120275179956E-02  0.124158889799E-02  0.128167791659E-02  0.132305907237E-02
-  0.136577386512E-02  0.140986511768E-02  0.145537701746E-02  0.150235515925E-02  0.155084658925E-02
-  0.160089985052E-02  0.165256502971E-02  0.170589380529E-02  0.176093949712E-02  0.181775711760E-02
-  0.187640342429E-02  0.193693697409E-02  0.199941817908E-02  0.206390936390E-02  0.213047482499E-02
-  0.219918089139E-02  0.227009598742E-02  0.234329069717E-02  0.241883783086E-02  0.249681249307E-02
-  0.257729215303E-02  0.266035671683E-02  0.274608860172E-02  0.283457281255E-02  0.292589702034E-02
-  0.302015164303E-02  0.311742992854E-02  0.321782804011E-02  0.332144514397E-02  0.342838349946E-02
-  0.353874855160E-02  0.365264902612E-02  0.377019702712E-02  0.389150813722E-02  0.401670152049E-02
-  0.414590002798E-02  0.427923030608E-02  0.441682290755E-02  0.455881240553E-02  0.470533751028E-02
-  0.485654118900E-02  0.501257078845E-02  0.517357816061E-02  0.533971979149E-02  0.551115693279E-02
-  0.568805573680E-02  0.587058739433E-02  0.605892827584E-02  0.625326007563E-02  0.645376995923E-02
-  0.666065071397E-02  0.687410090265E-02  0.709432502044E-02  0.732153365478E-02  0.755594364866E-02
-  0.779777826652E-02  0.804726736390E-02  0.830464755909E-02  0.857016240900E-02  0.884406258640E-02
-  0.912660606132E-02  0.941805828423E-02  0.971869237195E-02  0.100287892964E-01  0.103486380750E-01
-  0.106785359635E-01  0.110187886512E-01  0.113697104566E-01  0.117316245259E-01  0.121048630323E-01
-  0.124897673751E-01  0.128866883819E-01  0.132959865080E-01  0.137180320384E-01  0.141532052878E-01
-  0.146018967997E-01  0.150645075448E-01  0.155414491166E-01  0.160331439246E-01  0.165400253848E-01
-  0.170625381058E-01  0.176011380701E-01  0.181562928105E-01  0.187284815799E-01  0.193181955137E-01
-  0.199259377844E-01  0.205522237464E-01  0.211975810705E-01  0.218625498668E-01  0.225476827944E-01
-  0.232535451563E-01  0.239807149791E-01  0.247297830737E-01  0.255013530778E-01  0.262960414763E-01
-  0.271144775983E-01  0.279573035892E-01  0.288251743544E-01  0.297187574729E-01  0.306387330781E-01
-  0.315857937031E-01  0.325606440870E-01  0.335640009402E-01  0.345965926640E-01  0.356591590220E-01
-  0.367524507593E-01  0.378772291652E-01  0.390342655757E-01  0.402243408110E-01  0.414482445436E-01
-  0.427067745919E-01  0.440007361337E-01  0.453309408352E-01  0.466982058883E-01  0.481033529513E-01
-  0.495472069857E-01  0.510305949826E-01  0.525543445725E-01  0.541192825097E-01  0.557262330238E-01
-  0.573760160317E-01  0.590694451993E-01  0.608073258461E-01  0.625904526816E-01  0.644196073662E-01
-  0.662955558838E-01  0.682190457186E-01  0.701908028232E-01  0.722115283678E-01  0.742818952600E-01
-  0.764025444212E-01  0.785740808093E-01  0.807970691759E-01  0.830720295419E-01  0.853994323839E-01
-  0.877796935126E-01  0.902131686350E-01  0.927001475833E-01  0.952408481994E-01  0.978354098603E-01
-  0.100483886632E+00  0.103186240036E+00  0.105942331426E+00  0.108751913939E+00  0.111614624041E+00
-  0.114529972627E+00  0.117497335686E+00  0.120515944498E+00  0.123584875391E+00  0.126703039005E+00
-  0.129869169099E+00  0.133081810868E+00  0.136339308790E+00  0.139639793985E+00  0.142981171101E+00
-  0.146361104728E+00  0.149777005361E+00  0.153226014901E+00  0.156704991737E+00  0.160210495417E+00
-  0.163738770941E+00  0.167285732697E+00  0.170846948100E+00  0.174417620953E+00  0.177992574602E+00
-  0.181566234937E+00  0.185132613303E+00  0.188685289405E+00  0.192217394292E+00  0.195721593504E+00
-  0.199190070517E+00  0.202614510568E+00  0.205986085027E+00  0.209295436430E+00  0.212532664351E+00
-  0.215687312275E+00  0.218748355654E+00  0.221704191362E+00  0.224542628748E+00  0.227250882534E+00
-  0.229815567796E+00  0.232222697309E+00  0.234457681522E+00  0.236505331475E+00  0.238349864969E+00
-  0.239974916327E+00  0.241363550084E+00  0.242498278978E+00  0.243361086622E+00  0.243933455227E+00
-  0.244196398801E+00  0.244130502213E+00  0.243715966544E+00  0.242932661134E+00  0.241760182755E+00
-  0.240177922301E+00  0.238165139411E+00  0.235701045406E+00  0.232764894903E+00  0.229336086443E+00
-  0.225394272444E+00  0.220919478726E+00  0.215892233821E+00  0.210293708226E+00  0.204105863651E+00
-  0.197311612280E+00  0.189894985941E+00  0.181841314980E+00  0.173137416545E+00  0.163771791829E+00
-  0.153734831728E+00  0.143019030191E+00  0.131619204408E+00  0.119532720834E+00  0.106759725824E+00
-  0.933033795277E-01  0.791700914244E-01  0.643697556857E-01  0.489159842511E-01  0.328263352024E-01
-  0.161225336665E-01 -0.116931789868E-02 -0.190185435298E-01 -0.373897154028E-01 -0.562424969619E-01
- -0.755315106483E-01 -0.952062321565E-01 -0.115210911281E+00 -0.135484517197E+00 -0.155960704264E+00
- -0.176567794242E+00 -0.197228773280E+00 -0.217861307379E+00 -0.238377787431E+00 -0.258685422148E+00
- -0.278686401205E+00 -0.298278148790E+00 -0.317353678585E+00 -0.335802047802E+00 -0.353508896551E+00
- -0.370357054796E+00 -0.386227202908E+00 -0.400998578759E+00 -0.414549729935E+00 -0.426759311736E+00
- -0.437506930652E+00 -0.446674029444E+00 -0.454144808540E+00 -0.459807175066E+00 -0.463553710585E+00
- -0.465282647871E+00 -0.464898847424E+00 -0.462314764450E+00 -0.457451398192E+00 -0.450239215408E+00
- -0.440619040450E+00 -0.428542905017E+00 -0.413974850508E+00 -0.396891676564E+00 -0.377283628995E+00
- -0.355155020605E+00 -0.330524777997E+00 -0.303426906672E+00 -0.273910866599E+00 -0.242041849499E+00
- -0.207900947753E+00 -0.171585205060E+00 -0.133207537940E+00 -0.928965176587E-01 -0.507960038343E-01
- -0.706462318874E-02  0.381249082892E-01  0.845866157243E-01  0.132122236961E+00  0.180522317286E+00
-  0.229567404370E+00  0.279029321687E+00  0.328672508685E+00  0.378255438406E+00  0.427532163428E+00
-  0.476254096171E+00  0.524172207141E+00  0.571039903275E+00  0.616616865042E+00  0.660673900196E+00
-  0.702998097735E+00  0.743396073735E+00  0.781691755158E+00  0.817716506082E+00  0.851295262156E+00
-  0.882238303138E+00  0.910345746539E+00  0.935421494478E+00  0.957287301571E+00  0.975791215624E+00
-  0.990810703323E+00  0.100225314176E+01  0.101005569110E+01  0.101418535318E+01  0.101463927790E+01
-  0.101144510801E+01  0.100466111497E+01  0.994375950448E+00  0.980707901591E+00  0.963803639329E+00
-  0.943836461172E+00  0.921004116597E+00  0.895526241359E+00  0.867641520215E+00  0.837604615000E+00
-  0.805682938619E+00  0.772153342384E+00  0.737298744582E+00  0.701404760904E+00  0.664756390336E+00
-  0.627634741711E+00  0.590313873286E+00  0.553057756365E+00  0.516117401327E+00  0.479728188657E+00
-  0.444107456577E+00  0.409452404308E+00  0.375938372688E+00  0.343717559055E+00  0.312918210115E+00
-  0.283644316716E+00  0.255975805584E+00  0.229969207138E+00  0.205658740221E+00  0.183057753088E+00
-  0.162160440109E+00
- pseudo wavefunction
-  0.815477257113E-04  0.841994543121E-04  0.869374105116E-04  0.897643982160E-04  0.926833125078E-04
-  0.956971426101E-04  0.988089749485E-04  0.102021996311E-03  0.105339497112E-03  0.108764874763E-03
-  0.112301637149E-03  0.115953406224E-03  0.119723921719E-03  0.123617044970E-03  0.127636762877E-03
-  0.131787191981E-03  0.136072582684E-03  0.140497323602E-03  0.145065946054E-03  0.149783128710E-03
-  0.154653702376E-03  0.159682654946E-03  0.164875136506E-03  0.170236464611E-03  0.175772129729E-03
-  0.181487800864E-03  0.187389331363E-03  0.193482764908E-03  0.199774341708E-03  0.206270504887E-03
-  0.212977907082E-03  0.219903417260E-03  0.227054127747E-03  0.234437361494E-03  0.242060679579E-03
-  0.249931888944E-03  0.258059050395E-03  0.266450486854E-03  0.275114791884E-03  0.284060838489E-03
-  0.293297788203E-03  0.302835100467E-03  0.312682542321E-03  0.322850198405E-03  0.333348481284E-03
-  0.344188142117E-03  0.355380281661E-03  0.366936361642E-03  0.378868216494E-03  0.391188065475E-03
-  0.403908525185E-03  0.417042622483E-03  0.430603807827E-03  0.444605969054E-03  0.459063445594E-03
-  0.473991043162E-03  0.489404048917E-03  0.505318247117E-03  0.521749935286E-03  0.538715940900E-03
-  0.556233638623E-03  0.574320968101E-03  0.592996452329E-03  0.612279216623E-03  0.632189008208E-03
-  0.652746216436E-03  0.673971893671E-03  0.695887776845E-03  0.718516309720E-03  0.741880665872E-03
-  0.766004772421E-03  0.790913334538E-03  0.816631860740E-03  0.843186689018E-03  0.870605013804E-03
-  0.898914913826E-03  0.928145380856E-03  0.958326349405E-03  0.989488727376E-03  0.102166442772E-02
-  0.105488640110E-02  0.108918866967E-02  0.112460636188E-02  0.116117574846E-02  0.119893427959E-02
-  0.123792062320E-02  0.127817470463E-02  0.131973774745E-02  0.136265231574E-02  0.140696235763E-02
-  0.145271325033E-02  0.149995184660E-02  0.154872652270E-02  0.159908722798E-02  0.165108553598E-02
-  0.170477469728E-02  0.176020969402E-02  0.181744729618E-02  0.187654611977E-02  0.193756668679E-02
-  0.200057148727E-02  0.206562504320E-02  0.213279397464E-02  0.220214706796E-02  0.227375534621E-02
-  0.234769214192E-02  0.242403317215E-02  0.250285661605E-02  0.258424319488E-02  0.266827625473E-02
-  0.275504185178E-02  0.284462884051E-02  0.293712896461E-02  0.303263695098E-02  0.313125060667E-02
-  0.323307091910E-02  0.333820215938E-02  0.344675198915E-02  0.355883157079E-02  0.367455568123E-02
-  0.379404282948E-02  0.391741537797E-02  0.404479966782E-02  0.417632614823E-02  0.431212951000E-02
-  0.445234882345E-02  0.459712768080E-02  0.474661434319E-02  0.490096189243E-02  0.506032838775E-02
-  0.522487702760E-02  0.539477631671E-02  0.557020023861E-02  0.575132843370E-02  0.593834638314E-02
-  0.613144559871E-02  0.633082381885E-02  0.653668521102E-02  0.674924058070E-02  0.696870758709E-02
-  0.719531096592E-02  0.742928275939E-02  0.767086255365E-02  0.792029772395E-02  0.817784368774E-02
-  0.844376416603E-02  0.871833145320E-02  0.900182669552E-02  0.929454017879E-02  0.959677162528E-02
-  0.990883050022E-02  0.102310363284E-01  0.105637190207E-01  0.109072192118E-01  0.112618886081E-01
-  0.116280903475E-01  0.120061993704E-01  0.123966028031E-01  0.127997003533E-01  0.132159047187E-01
-  0.136456420083E-01  0.140893521779E-01  0.145474894794E-01  0.150205229247E-01  0.155089367643E-01
-  0.160132309818E-01  0.165339218041E-01  0.170715422280E-01  0.176266425639E-01  0.181997909971E-01
-  0.187915741665E-01  0.194025977634E-01  0.200334871477E-01  0.206848879853E-01  0.213574669051E-01
-  0.220519121780E-01  0.227689344162E-01  0.235092672965E-01  0.242736683058E-01  0.250629195101E-01
-  0.258778283492E-01  0.267192284556E-01  0.275879804997E-01  0.284849730625E-01  0.294111235351E-01
-  0.303673790471E-01  0.313547174243E-01  0.323741481766E-01  0.334267135170E-01  0.345134894124E-01
-  0.356355866676E-01  0.367941520430E-01  0.379903694070E-01  0.392254609246E-01  0.405006882824E-01
-  0.418173539515E-01  0.431768024894E-01  0.445804218815E-01  0.460296449237E-01  0.475259506471E-01
-  0.490708657851E-01  0.506659662856E-01  0.523128788672E-01  0.540132826228E-01  0.557689106695E-01
-  0.575815518475E-01  0.594530524680E-01  0.613853181118E-01  0.633803154786E-01  0.654400742896E-01
-  0.675666892425E-01  0.697623220209E-01  0.720292033587E-01  0.743696351597E-01  0.767859926737E-01
-  0.792807267296E-01  0.818563660248E-01  0.845155194735E-01  0.872608786111E-01  0.900952200573E-01
-  0.930214080363E-01  0.960423969533E-01  0.991612340281E-01  0.102381061984E+00  0.105705121788E+00
-  0.109136755450E+00  0.112679408862E+00  0.116336634695E+00  0.120112095333E+00  0.124009565855E+00
-  0.128032937043E+00  0.132186218436E+00  0.136473541398E+00  0.140899162210E+00  0.145467465175E+00
-  0.150182965720E+00  0.155050313498E+00  0.160074295467E+00  0.165259838936E+00  0.170612014565E+00
-  0.176136039306E+00  0.181837279254E+00  0.187721252402E+00  0.193793631261E+00  0.200060245332E+00
-  0.206527083389E+00  0.213200295545E+00  0.220086195059E+00  0.227191259846E+00  0.234522133635E+00
-  0.242085626730E+00  0.249888716306E+00  0.257938546178E+00  0.266242425963E+00  0.274807829557E+00
-  0.283642392830E+00  0.292753910429E+00  0.302150331579E+00  0.311839754749E+00  0.321830421030E+00
-  0.332130706074E+00  0.342749110390E+00  0.353694247819E+00  0.364974831931E+00  0.376599660114E+00
-  0.388577595046E+00  0.400917543253E+00  0.413628430375E+00  0.426719172761E+00  0.440198644933E+00
-  0.454075642432E+00  0.468358839485E+00  0.483056740881E+00  0.498177627359E+00  0.513729493745E+00
-  0.529719978972E+00  0.546156287045E+00  0.563045097863E+00  0.580392466756E+00  0.598203711387E+00
-  0.616483284604E+00  0.635234631621E+00  0.654460029761E+00  0.674160408817E+00  0.694335149890E+00
-  0.714981860357E+00  0.736096122431E+00  0.757671212527E+00  0.779697788452E+00  0.802163541211E+00
-  0.825052808008E+00  0.848346142836E+00  0.872019840898E+00  0.896045412985E+00  0.920389005890E+00
-  0.945010765014E+00  0.969864135460E+00  0.994895098271E+00  0.102004133900E+01  0.104523134664E+01
-  0.107038344193E+01  0.109540473587E+01  0.112019002089E+01  0.114462060011E+01  0.116856306300E+01
-  0.119186802024E+01  0.121436881520E+01  0.123588023556E+01  0.125619725611E+01  0.127509385139E+01
-  0.129232192750E+01  0.130761043238E+01  0.132066471690E+01  0.133116623170E+01  0.133877265895E+01
-  0.134311859223E+01  0.134381689101E+01  0.134046084846E+01  0.133262731962E+01  0.131988096144E+01
-  0.130177973302E+01  0.127788310298E+01  0.124791979347E+01  0.121195594119E+01  0.117012955700E+01
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00
- ae wavefunction
-  0.100411206031E-02  0.103655653257E-02  0.107004824907E-02  0.110462094206E-02  0.114030942574E-02
-  0.117714963085E-02  0.121517864012E-02  0.125443472469E-02  0.129495738219E-02  0.133678737526E-02
-  0.137996677192E-02  0.142453898676E-02  0.147054882368E-02  0.151804251972E-02  0.156706779045E-02
-  0.161767387661E-02  0.166991159220E-02  0.172383337419E-02  0.177949333353E-02  0.183694730789E-02
-  0.189625291594E-02  0.195746961331E-02  0.202065875021E-02  0.208588363083E-02  0.215320957455E-02
-  0.222270397899E-02  0.229443638492E-02  0.236847854317E-02  0.244490448353E-02  0.252379058570E-02
-  0.260521565239E-02  0.268926098453E-02  0.277601045878E-02  0.286555060725E-02  0.295797069967E-02
-  0.305336282787E-02  0.315182199281E-02  0.325344619405E-02  0.335833652195E-02  0.346659725239E-02
-  0.357833594433E-02  0.369366354008E-02  0.381269446850E-02  0.393554675108E-02  0.406234211102E-02
-  0.419320608539E-02  0.432826814042E-02  0.446766179001E-02  0.461152471742E-02  0.475999890040E-02
-  0.491323073976E-02  0.507137119125E-02  0.523457590114E-02  0.540300534538E-02  0.557682497239E-02
-  0.575620534963E-02  0.594132231403E-02  0.613235712617E-02  0.632949662853E-02  0.653293340765E-02
-  0.674286596037E-02  0.695949886420E-02  0.718304295172E-02  0.741371548940E-02  0.765174036045E-02
-  0.789734825209E-02  0.815077684708E-02  0.841227101959E-02  0.868208303549E-02  0.896047275693E-02
-  0.924770785137E-02  0.954406400502E-02  0.984982514059E-02  0.101652836394E-01  0.104907405678E-01
-  0.108265059081E-01  0.111728987934E-01  0.115302477462E-01  0.118988909230E-01  0.122791763595E-01
-  0.126714622234E-01  0.130761170679E-01  0.134935200904E-01  0.139240613943E-01  0.143681422534E-01
-  0.148261753797E-01  0.152985851939E-01  0.157858080982E-01  0.162882927509E-01  0.168065003429E-01
-  0.173409048755E-01  0.178919934394E-01  0.184602664931E-01  0.190462381422E-01  0.196504364175E-01
-  0.202734035517E-01  0.209156962543E-01  0.215778859835E-01  0.222605592145E-01  0.229643177037E-01
-  0.236897787473E-01  0.244375754327E-01  0.252083568839E-01  0.260027884966E-01  0.268215521644E-01
-  0.276653464924E-01  0.285348869993E-01  0.294309063035E-01  0.303541542937E-01  0.313053982813E-01
-  0.322854231324E-01  0.332950313775E-01  0.343350432971E-01  0.354062969793E-01  0.365096483489E-01
-  0.376459711628E-01  0.388161569716E-01  0.400211150407E-01  0.412617722306E-01  0.425390728318E-01
-  0.438539783489E-01  0.452074672324E-01  0.466005345522E-01  0.480341916085E-01  0.495094654752E-01
-  0.510273984710E-01  0.525890475524E-01  0.541954836221E-01  0.558477907490E-01  0.575470652892E-01
-  0.592944149057E-01  0.610909574763E-01  0.629378198839E-01  0.648361366790E-01  0.667870486093E-01
-  0.687917010039E-01  0.708512420048E-01  0.729668206361E-01  0.751395846992E-01  0.773706784836E-01
-  0.796612402836E-01  0.820123997070E-01  0.844252747640E-01  0.869009687250E-01  0.894405667320E-01
-  0.920451321506E-01  0.947157026489E-01  0.974532859865E-01  0.100258855501E+00  0.103133345273E+00
-  0.106077644955E+00  0.109092594252E+00  0.112178977021E+00  0.115337514994E+00  0.118568861090E+00
-  0.121873592304E+00  0.125252202151E+00  0.128705092655E+00  0.132232565851E+00  0.135834814797E+00
-  0.139511914062E+00  0.143263809684E+00  0.147090308573E+00  0.150991067341E+00  0.154965580557E+00
-  0.159013168383E+00  0.163132963604E+00  0.167323898026E+00  0.171584688232E+00  0.175913820679E+00
-  0.180309536147E+00  0.184769813516E+00  0.189292352876E+00  0.193874557970E+00  0.198513517983E+00
-  0.203205988665E+00  0.207948372826E+00  0.212736700201E+00  0.217566606727E+00  0.222433313240E+00
-  0.227331603655E+00  0.232255802656E+00  0.237199752953E+00  0.242156792174E+00  0.247119729454E+00
-  0.252080821818E+00  0.257031750433E+00  0.261963596859E+00  0.266866819394E+00  0.271731229666E+00
-  0.276545969613E+00  0.281299489013E+00  0.285979523755E+00  0.290573075042E+00  0.295066389746E+00
-  0.299444942160E+00  0.303693417394E+00  0.307795696707E+00  0.311734845064E+00  0.315493101250E+00
-  0.319051870893E+00  0.322391722743E+00  0.325492388640E+00  0.328332767535E+00  0.330890934065E+00
-  0.333144152089E+00  0.335068893704E+00  0.336640864237E+00  0.337835033734E+00  0.338625675483E+00
-  0.338986412149E+00  0.338890270056E+00  0.338309742224E+00  0.337216860715E+00  0.335583278886E+00
-  0.333380364113E+00  0.330579301540E+00  0.327151209410E+00  0.323067266460E+00  0.318298851881E+00
-  0.312817698250E+00  0.306596057794E+00  0.299606882299E+00  0.291824016847E+00  0.283222407513E+00
-  0.273778323006E+00  0.263469590136E+00  0.252275842824E+00  0.240178784252E+00  0.227162461529E+00
-  0.213213552127E+00  0.198321661083E+00  0.182479627800E+00  0.165683841030E+00  0.147934560383E+00
-  0.129236242450E+00  0.109597869328E+00  0.890332769980E-01  0.675614806516E-01  0.452069935885E-01
-  0.220001358488E-01 -0.202267179947E-02 -0.268186333727E-01 -0.523383278445E-01 -0.785254890752E-01
- -0.105316819838E+00 -0.132641842628E+00 -0.160422787359E+00 -0.188574512968E+00 -0.217004457521E+00
- -0.245612611158E+00 -0.274291509649E+00 -0.302926253778E+00 -0.331394570066E+00 -0.359566938358E+00
- -0.387306817382E+00 -0.414470996398E+00 -0.440910088322E+00 -0.466469161094E+00 -0.490988488296E+00
- -0.514304394485E+00 -0.536250175925E+00 -0.556657087061E+00 -0.575355390912E+00 -0.592175474576E+00
- -0.606949029250E+00 -0.619510290028E+00 -0.629697327922E+00 -0.637353382408E+00 -0.642328222232E+00
- -0.644479521263E+00 -0.643674236664E+00 -0.639789976727E+00 -0.632716347271E+00 -0.622356265451E+00
- -0.608627230644E+00 -0.591462542992E+00 -0.570812459931E+00 -0.546645281908E+00 -0.518948357967E+00
- -0.487729002212E+00 -0.453015311567E+00 -0.414856874075E+00 -0.373325356806E+00 -0.328514960967E+00
- -0.280542730002E+00 -0.229548696640E+00 -0.175695853364E+00 -0.119169931471E+00 -0.601789761144E-01
-  0.104729211497E-02  0.642583319031E-01  0.129183846977E+00  0.195535047578E+00  0.263006083041E+00
-  0.331275614340E+00  0.400008497553E+00  0.468857563600E+00  0.537465511386E+00  0.605466987922E+00
-  0.672491005793E+00  0.738163955532E+00  0.802113577363E+00  0.863974274314E+00  0.923393832698E+00
-  0.980040530008E+00  0.103360754150E+01  0.108380973017E+01  0.113036987200E+01  0.117299954389E+01
-  0.121138806437E+01  0.124520914300E+01  0.127414049534E+01  0.129788344230E+01  0.131617463165E+01
-  0.132879041294E+01  0.133554760128E+01  0.133630339312E+01  0.133095550857E+01  0.131944261315E+01
-  0.130174470424E+01  0.127788310298E+01  0.124791979347E+01  0.121195594119E+01  0.117012955700E+01
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00
- pseudo wavefunction
-  0.291401325933E-08  0.310660738532E-08  0.331193051905E-08  0.353082395115E-08  0.376418457520E-08
-  0.401296856259E-08  0.427819528042E-08  0.456095146815E-08  0.486239569049E-08  0.518376308447E-08
-  0.552637042028E-08  0.589162149659E-08  0.628101289253E-08  0.669614009969E-08  0.713870405956E-08
-  0.761051813289E-08  0.811351552983E-08  0.864975723099E-08  0.922144043214E-08  0.983090754699E-08
-  0.104806558050E-07  0.111733474834E-07  0.119118208158E-07  0.126991016216E-07  0.135384157035E-07
-  0.144332020655E-07  0.153871270036E-07  0.164040991280E-07  0.174882853783E-07  0.186441280971E-07
-  0.198763632322E-07  0.211900397413E-07  0.225905402799E-07  0.240836032562E-07  0.256753463434E-07
-  0.273722915463E-07  0.291813919246E-07  0.311100600826E-07  0.331661985409E-07  0.353582321169E-07
-  0.376951424442E-07  0.401865047739E-07  0.428425272086E-07  0.456740925285E-07  0.486928027827E-07
-  0.519110268276E-07  0.553419510066E-07  0.589996331800E-07  0.628990603257E-07  0.670562099465E-07
-  0.714881155364E-07  0.762129363737E-07  0.812500319263E-07  0.866200411755E-07  0.923449671818E-07
-  0.984482672403E-07  0.104954948994E-06  0.111891672901E-06  0.119286861471E-06  0.127170815725E-06
-  0.135575839351E-06  0.144536371063E-06  0.154089125712E-06  0.164273244717E-06  0.175130456449E-06
-  0.186705247203E-06  0.199045043477E-06  0.212200406300E-06  0.226225238396E-06  0.241177005044E-06
-  0.257116969541E-06  0.274110444214E-06  0.292227058035E-06  0.311541041917E-06  0.332131532864E-06
-  0.354082898227E-06  0.377485081388E-06  0.402433970297E-06  0.429031790352E-06  0.457387523265E-06
-  0.487617353594E-06  0.519845144797E-06  0.554202946748E-06  0.590831536791E-06  0.629880996560E-06
-  0.671511326916E-06  0.715893103531E-06  0.763208175796E-06  0.813650411926E-06  0.867426493305E-06
-  0.924756761334E-06  0.985876120248E-06  0.105103499960E-05  0.112050038036E-05  0.119455688881E-05
-  0.127350796280E-05  0.135767709497E-05  0.144740915825E-05  0.154307181892E-05  0.164505704302E-05
-  0.175378270241E-05  0.186969428687E-05  0.199326672943E-05  0.212500635232E-05  0.226545294151E-05
-  0.241518195837E-05  0.257480689749E-05  0.274498180033E-05  0.292640393503E-05  0.311981665323E-05
-  0.332601243583E-05  0.354583613993E-05  0.378018846037E-05  0.403002962015E-05  0.429638330457E-05
-  0.458034085547E-05  0.488306574269E-05  0.520579833094E-05  0.554986096174E-05  0.591666337125E-05
-  0.630770846606E-05  0.672459848077E-05  0.716904154238E-05  0.764285866862E-05  0.814799122864E-05
-  0.868650889678E-05  0.926061813200E-05  0.987267121753E-05  0.105251758980E-04  0.112208056533E-04
-  0.119624106514E-04  0.127530294250E-04  0.135959013195E-04  0.144944797639E-04  0.154524464180E-04
-  0.164737262553E-04  0.175625036414E-04  0.187232394758E-04  0.199606894654E-04  0.212799236061E-04
-  0.226863469507E-04  0.241857217502E-04  0.257841910562E-04  0.274883038842E-04  0.293050420377E-04
-  0.312418487062E-04  0.333066589503E-04  0.355079322021E-04  0.378546869117E-04  0.403565374822E-04
-  0.430237336441E-04  0.458672024310E-04  0.488985929263E-04  0.521303239658E-04  0.555756349902E-04
-  0.592486402555E-04  0.631643866225E-04  0.673389151628E-04  0.717893268303E-04  0.765338524702E-04
-  0.815919274473E-04  0.869842712009E-04  0.927329720510E-04  0.988615775995E-04  0.105395191097E-03
-  0.112360574171E-03  0.119786256323E-03  0.127702651659E-03  0.136142183310E-03  0.145139416064E-03
-  0.154731197738E-03  0.164956809872E-03  0.175858128359E-03  0.187479794654E-03  0.199869398273E-03
-  0.213077671305E-03  0.227158695740E-03  0.242170124453E-03  0.258173416722E-03  0.275234089266E-03
-  0.293421983779E-03  0.312811552079E-03  0.333482159993E-03  0.355518411228E-03  0.379010492513E-03
-  0.404054541419E-03  0.430753038322E-03  0.459215224092E-03  0.489557545183E-03  0.521904127897E-03
-  0.556387283727E-03  0.593148047805E-03  0.632336752571E-03  0.674113638984E-03  0.718649507668E-03
-  0.766126412590E-03  0.816738400009E-03  0.870692295607E-03  0.928208542896E-03  0.989522096188E-03
-  0.105488337163E-02  0.112455925999E-02  0.119883420516E-02  0.127801135246E-02  0.136241377136E-02
-  0.145238575706E-02  0.154829421610E-02  0.165053014116E-02  0.175951018072E-02  0.187567830934E-02
-  0.199950760496E-02  0.213150213972E-02  0.227219899132E-02  0.242217038221E-02  0.258202595451E-02
-  0.275241518875E-02  0.293402997498E-02  0.312760734560E-02  0.333393237906E-02  0.355384128481E-02
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-  0.521269589551E-02  0.555614236937E-02  0.592214183672E-02  0.631216498309E-02  0.672777699290E-02
-  0.717064342923E-02  0.764253645283E-02  0.814534139630E-02  0.868106370932E-02  0.925183629115E-02
-  0.985992722626E-02  0.105077479391E-01  0.111978617832E-01  0.119329930798E-01  0.127160366201E-01
-  0.135500676430E-01  0.144383523024E-01  0.153843586304E-01  0.163917680069E-01  0.174644871387E-01
-  0.186066605500E-01  0.198226835816E-01  0.211172158919E-01  0.224951954467E-01  0.239618529776E-01
-  0.255227268840E-01  0.271836785399E-01  0.289509079627E-01  0.308309697832E-01  0.328307894472E-01
-  0.349576795609E-01  0.372193562769E-01  0.396239555947E-01  0.421800494316E-01  0.448966612888E-01
-  0.477832813164E-01  0.508498805412E-01  0.541069239936E-01  0.575653824260E-01  0.612367422726E-01
-  0.651330134572E-01  0.692667345974E-01  0.736509751040E-01  0.782993336099E-01  0.832259320992E-01
-  0.884454050389E-01  0.939728827426E-01  0.998239681194E-01  0.106014705886E+00  0.112561543240E+00
-  0.119481280915E+00  0.126791013465E+00  0.134508057562E+00  0.142649867018E+00  0.151233933217E+00
-  0.160277669592E+00  0.169798278812E+00  0.179812601329E+00  0.190336944040E+00  0.201386887920E+00
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-  0.279446418120E+00  0.294500081243E+00  0.310147358389E+00  0.326384964240E+00  0.343205787016E+00
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-  0.455402750406E+00  0.475707738325E+00  0.496358503092E+00  0.517298844394E+00  0.538466336048E+00
-  0.559792445588E+00  0.581202735249E+00  0.602617128756E+00  0.623950215269E+00  0.645111545175E+00
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- ae wavefunction
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- pseudo wavefunction
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-  0.121063510361E+01  0.123900796074E+01  0.126509018530E+01  0.128853432805E+01  0.130897377168E+01
-  0.132602054064E+01  0.133926187406E+01  0.134825530053E+01  0.135252200835E+01  0.135153841669E+01
-  0.134472604132E+01  0.133144140608E+01  0.131113985918E+01  0.128359157702E+01  0.124863807676E+01
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00
- ae wavefunction
- -0.419591673479E-06 -0.445236660954E-06 -0.472305250687E-06 -0.500884925173E-06 -0.531068206171E-06
- -0.562952965377E-06 -0.596642760627E-06 -0.632247202450E-06 -0.669882317876E-06 -0.709670970157E-06
- -0.751743273549E-06 -0.796237058589E-06 -0.843298343123E-06 -0.893081857389E-06 -0.945751579095E-06
- -0.100148131688E-05 -0.106045532797E-05 -0.112286896479E-05 -0.118892937793E-05 -0.125885625057E-05
- -0.133288258579E-05 -0.141125554245E-05 -0.149423732267E-05 -0.158210611794E-05 -0.167515711327E-05
- -0.177370355614E-05 -0.187807789421E-05 -0.198863298444E-05 -0.210574338018E-05 -0.222980670049E-05
- -0.236124508686E-05 -0.250050675369E-05 -0.264806763788E-05 -0.280443315455E-05 -0.297014006557E-05
- -0.314575846823E-05 -0.333189391186E-05 -0.352918965126E-05 -0.373832904445E-05 -0.396003810621E-05
- -0.419508822539E-05 -0.444429905901E-05 -0.470854161112E-05 -0.498874151386E-05 -0.528588251725E-05
- -0.560101020839E-05 -0.593523596640E-05 -0.628974117866E-05 -0.666578172614E-05 -0.706469276477E-05
- -0.748789380520E-05 -0.793689413439E-05 -0.841329858154E-05 -0.891881365848E-05 -0.945525409868E-05
- -0.100245498207E-04 -0.106287533383E-04 -0.112700476609E-04 -0.119507546913E-04 -0.126733441838E-04
- -0.134404432655E-04 -0.142548465883E-04 -0.151195271357E-04 -0.160376477180E-04 -0.170125732291E-04
- -0.180478836822E-04 -0.191473880961E-04 -0.203151392770E-04 -0.215554495594E-04 -0.228729075576E-04
- -0.242723960099E-04 -0.257591107648E-04 -0.273385809967E-04 -0.290166907359E-04 -0.307997017578E-04
- -0.326942780077E-04 -0.347075115045E-04 -0.368469500336E-04 -0.391206264891E-04 -0.415370902338E-04
- -0.441054403792E-04 -0.468353612296E-04 -0.497371600521E-04 -0.528218071755E-04 -0.561009787541E-04
- -0.595871022176E-04 -0.632934046196E-04 -0.672339641473E-04 -0.714237648284E-04 -0.758787548062E-04
- -0.806159083152E-04 -0.856532915520E-04 -0.910101328385E-04 -0.967068971463E-04 -0.102765365426E-03
- -0.109208718933E-03 -0.116061628915E-03 -0.123350351965E-03 -0.131102831408E-03 -0.139348805092E-03
- -0.148119919962E-03 -0.157449853863E-03 -0.167374444991E-03 -0.177931829462E-03 -0.189162587521E-03
- -0.201109898875E-03 -0.213819707747E-03 -0.227340898203E-03 -0.241725480395E-03 -0.257028788379E-03
- -0.273309690165E-03 -0.290630810807E-03 -0.309058769194E-03 -0.328664429493E-03 -0.349523167966E-03
- -0.371715156200E-03 -0.395325661615E-03 -0.420445366275E-03 -0.447170705143E-03 -0.475604224753E-03
- -0.505854963647E-03 -0.538038855679E-03 -0.572279157541E-03 -0.608706901916E-03 -0.647461377632E-03
- -0.688690638341E-03 -0.732552041357E-03 -0.779212818233E-03 -0.828850678842E-03 -0.881654450829E-03
- -0.937824756232E-03 -0.997574727349E-03 -0.106113076385E-02 -0.112873333333E-02 -0.120063781758E-02
- -0.127711540679E-02 -0.135845404425E-02 -0.144495942405E-02 -0.153695604425E-02 -0.163478831840E-02
- -0.173882174815E-02 -0.184944415970E-02 -0.196706700731E-02 -0.209212674663E-02 -0.222508628119E-02
- -0.236643648517E-02 -0.251669780565E-02 -0.267642194774E-02 -0.284619364598E-02 -0.302663252522E-02
- -0.321839505467E-02 -0.342217659827E-02 -0.363871356504E-02 -0.386878566260E-02 -0.411321825733E-02
- -0.437288484423E-02 -0.464870962994E-02 -0.494167023156E-02 -0.525280049427E-02 -0.558319343043E-02
- -0.593400428227E-02 -0.630645371041E-02 -0.670183110977E-02 -0.712149805405E-02 -0.756689186960E-02
- -0.803952933881E-02 -0.854101053252E-02 -0.907302277019E-02 -0.963734470585E-02 -0.102358505368E-01
- -0.108705143308E-01 -0.115434144674E-01 -0.122567381851E-01 -0.130127862287E-01 -0.138139775855E-01
- -0.146628542996E-01 -0.155620863515E-01 -0.165144765871E-01 -0.175229656786E-01 -0.185906370974E-01
- -0.197207220752E-01 -0.209166045292E-01 -0.221818259204E-01 -0.235200900133E-01 -0.249352675010E-01
- -0.264314004551E-01 -0.280127065554E-01 -0.296835830510E-01 -0.314486103986E-01 -0.333125555181E-01
- -0.352803746019E-01 -0.373572154063E-01 -0.395484189494E-01 -0.418595205316E-01 -0.442962499902E-01
- -0.468645310902E-01 -0.495704799483E-01 -0.524204023797E-01 -0.554207900464E-01 -0.585783152843E-01
- -0.618998244709E-01 -0.653923297941E-01 -0.690629992720E-01 -0.729191448635E-01 -0.769682085087E-01
- -0.812177459231E-01 -0.856754079688E-01 -0.903489194169E-01 -0.952460549124E-01 -0.100374611944E+00
- -0.105742380623E+00 -0.111357110073E+00 -0.117226471226E+00 -0.123358015834E+00 -0.129759131487E+00
- -0.136436992474E+00 -0.143398506273E+00 -0.150650255536E+00 -0.158198435396E+00 -0.166048785958E+00
- -0.174206519886E+00 -0.182676244971E+00 -0.191461881646E+00 -0.200566575426E+00 -0.209992604279E+00
- -0.219741281025E+00 -0.229812850838E+00 -0.240206384069E+00 -0.250919664576E+00 -0.261949073908E+00
- -0.273289471686E+00 -0.284934072667E+00 -0.296874321046E+00 -0.309099762684E+00 -0.321597916090E+00
- -0.334354143130E+00 -0.347351520683E+00 -0.360570714663E+00 -0.373989858114E+00 -0.387584435372E+00
- -0.401327174519E+00 -0.415187950525E+00 -0.429133701186E+00 -0.443128357849E+00 -0.457132790725E+00
- -0.471104767691E+00 -0.484998921703E+00 -0.498766719483E+00 -0.512356422012E+00 -0.525713027989E+00
- -0.538778196066E+00 -0.551490150480E+00 -0.563783586393E+00 -0.575589602443E+00 -0.586835694684E+00
- -0.597445844316E+00 -0.607340718942E+00 -0.616437986018E+00 -0.624652715226E+00 -0.631897834510E+00
- -0.638084607775E+00 -0.643123116697E+00 -0.646922744393E+00 -0.649392668142E+00 -0.650442370237E+00
- -0.649982173269E+00 -0.647923800099E+00 -0.644180957099E+00 -0.638669934919E+00 -0.631310221677E+00
- -0.622025123195E+00 -0.610742386067E+00 -0.597394819740E+00 -0.581920915553E+00 -0.564265460645E+00
- -0.544380145344E+00 -0.522224163384E+00 -0.497764803837E+00 -0.470978034224E+00 -0.441849073512E+00
- -0.410372953728E+00 -0.376555068042E+00 -0.340411701856E+00 -0.301970542890E+00 -0.261271164549E+00
- -0.218365474934E+00 -0.173318123362E+00 -0.126206854463E+00 -0.771227997739E-01 -0.261706977118E-01
-  0.265309653866E-01  0.808498960908E-01  0.136640013874E+00  0.193741540297E+00  0.251981141124E+00
-  0.311172100787E+00  0.371114512072E+00  0.431595477829E+00  0.492389350851E+00  0.553258089799E+00
-  0.613951880087E+00  0.674210269543E+00  0.733764172796E+00  0.792339126527E+00  0.849659904580E+00
-  0.905455616556E+00  0.959462488428E+00  0.101141974424E+01  0.106105567211E+01  0.110806847980E+01
-  0.115211437455E+01  0.119281223958E+01  0.122976095463E+01  0.126255737984E+01  0.129080748835E+01
-  0.131413097418E+01  0.133216280306E+01  0.134455435589E+01  0.135097524786E+01  0.135111592592E+01
-  0.134469077582E+01  0.133144140608E+01  0.131113985918E+01  0.128359157702E+01  0.124863807676E+01
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00  0.000000000000E+00
-  0.000000000000E+00
- End of Dataset
diff --git a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/gofree-cond1.sh/at_download/file b/docs.it4i.cz/salomon/software/chemistry/phono3py-input/gofree-cond1.sh/at_download/file
deleted file mode 100644
index 8dbf6d276685a7f2275a97e568bc18014c1a31c8..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/gofree-cond1.sh/at_download/file
+++ /dev/null
@@ -1,23 +0,0 @@
-#!/bin/bash
-#PBS -A OPEN-6-23
-#PBS -N Si-test1
-#PBS -q qfree 
-#PBS -l select=1:ncpus=24:mpiprocs=24:ompthreads=1
-#PBS -l walltime=01:59:59
-##PBS-l mem=6gb
-#PBS -j oe
-#PBS -S /bin/bash
-module purge
-module load phono3py/0.9.14-ictce-7.3.5-Python-2.7.9
-export OMP_NUM_THREADS=1
-export I_MPI_COMPATIBILITY=4
-##export OMP_STACKSIZE=10gb
-##0	1	2	3	4	10	11	12	13	20	21	22	30	31	40	91	92	93	94	101	102	103	111	112	121	182	183	184	192	193	202	273	274	283	364
-cd $PBS_O_WORKDIR
-phono3py --fc3 --fc2 --dim="2 2 2" --mesh="9 9 9" -c POSCAR  --sigma 0.1 --br --write_gamma --gp="0 1 3 4 10" 
-#phono3py --fc3 --fc2 --dim="2 2 2" --mesh="9 9 9" -c POSCAR  --sigma 0.1 --br --write_gamma --gp="11 12 13 20 21" 
-#phono3py --fc3 --fc2 --dim="2 2 2" --mesh="9 9 9" -c POSCAR  --sigma 0.1 --br --write_gamma --gp="21 22 30 31 40"
-#phono3py --fc3 --fc2 --dim="2 2 2" --mesh="9 9 9" -c POSCAR  --sigma 0.1 --br --write_gamma --gp="91 92 93 94 101"
-#phono3py --fc3 --fc2 --dim="2 2 2" --mesh="9 9 9" -c POSCAR  --sigma 0.1 --br --write_gamma --gp="102 103 111 112 121"
-#phono3py --fc3 --fc2 --dim="2 2 2" --mesh="9 9 9" -c POSCAR  --sigma 0.1 --br --write_gamma --gp="182 183 184 192 193"
-#phono3py --fc3 --fc2 --dim="2 2 2" --mesh="9 9 9" -c POSCAR  --sigma 0.1 --br --write_gamma --gp="202 273 274 283 364"
diff --git a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/poscar-si/at_download/file b/docs.it4i.cz/salomon/software/chemistry/phono3py-input/poscar-si/at_download/file
deleted file mode 100644
index f72a61b992f3348c4260097c12b9bbb2bed40bc3..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/poscar-si/at_download/file
+++ /dev/null
@@ -1,16 +0,0 @@
- Si
-   1.0
-     5.4335600309153529    0.0000000000000000    0.0000000000000000
-     0.0000000000000000    5.4335600309153529    0.0000000000000000
-     0.0000000000000000    0.0000000000000000    5.4335600309153529
- Si
-   8
-Direct
-   0.8750000000000000  0.8750000000000000  0.8750000000000000
-   0.8750000000000000  0.3750000000000000  0.3750000000000000
-   0.3750000000000000  0.8750000000000000  0.3750000000000000
-   0.3750000000000000  0.3750000000000000  0.8750000000000000
-   0.1250000000000000  0.1250000000000000  0.1250000000000000
-   0.1250000000000000  0.6250000000000000  0.6250000000000000
-   0.6250000000000000  0.1250000000000000  0.6250000000000000
-   0.6250000000000000  0.6250000000000000  0.1250000000000000
diff --git a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/prepare.sh/at_download/file b/docs.it4i.cz/salomon/software/chemistry/phono3py-input/prepare.sh/at_download/file
deleted file mode 100644
index a057dbbadd94d0298e7a4ba19244cb753bea7a9f..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/prepare.sh/at_download/file
+++ /dev/null
@@ -1,44 +0,0 @@
-#!/bin/bash
-P=`pwd`
-
-# number of displacements
-poc=9
-
-        for i in `seq 1 $poc `;
-        do
-        cd $P
-        mkdir disp-0000"$i"
-        cd disp-0000"$i"   
-        cp ../KPOINTS .
-        cp ../INCAR .
-        cp ../POTCAR .
-        cp ../POSCAR-0000"$i" POSCAR
-                echo $i
-        done 
-
-poc=99
-
-        for i in `seq 10 $poc `;
-        do
-        cd $P
-        mkdir disp-000"$i"
-        cd disp-000"$i"
-        cp ../KPOINTS .
-        cp ../INCAR .
-        cp ../POTCAR .
-        cp ../POSCAR-000"$i" POSCAR
-                echo $i
-        done
-poc=111
-
-        for i in `seq 100 $poc `;
-        do
-        cd $P
-        mkdir disp-00"$i"
-        cd disp-00"$i"
-        cp ../KPOINTS .
-        cp ../INCAR .
-        cp ../POTCAR .
-        cp ../POSCAR-00"$i" POSCAR
-                echo $i
-        done
diff --git a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/run.sh/at_download/file b/docs.it4i.cz/salomon/software/chemistry/phono3py-input/run.sh/at_download/file
deleted file mode 100644
index 63faf63ba41f0f6846c8b59030a64ae9c1415a55..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/run.sh/at_download/file
+++ /dev/null
@@ -1,31 +0,0 @@
-#!/bin/bash
-#PBS -A IT4I-9-11
-#PBS -N Si-test
-#PBS -q qprod 
-#PBS -l select=8:ncpus=16:mpiprocs=16:ompthreads=1
-#PBS -l walltime=23:59:59
-##PBS-l mem=6gb
-#PBS -j oe
-#PBS -S /bin/bash
-module load impi/4.1.1.036 intel/13.5.192 fftw3-mpi/3.3.3-icc
-export OMP_NUM_THREADS=1
-export I_MPI_COMPATIBILITY=4
-##export OMP_STACKSIZE=10gb
-b=`basename $PBS_O_WORKDIR`
-echo $b >log.vasp
-SCRDIR=/scratch/$USER/$b
-mkdir -p $SCRDIR
-cd $SCRDIR || exit
-
-# copy input file to scratch 
-cp $PBS_O_WORKDIR/* .
-
-mpirun ~/bin/vasp5.4.1 > log.exc
-
-# copy output file to home
-cp * $PBS_O_WORKDIR/. && cd ..
-
-rm -rf "$SCRDIR"
-
-#exit
-exit
diff --git a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/submit.sh/at_download/file b/docs.it4i.cz/salomon/software/chemistry/phono3py-input/submit.sh/at_download/file
deleted file mode 100644
index 12fa02ecc489a10df486cfd2fc55065c02d4eea4..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/chemistry/phono3py-input/submit.sh/at_download/file
+++ /dev/null
@@ -1,35 +0,0 @@
-#!/bin/bash
-P=`pwd`
-
-# number of displacements
-poc=9
-
-        for i in `seq 1 $poc `;
-        do
-        cd $P
-        cd disp-0000"$i"   
-        cp ../run.sh .
-        qsub run.sh
-                echo $i
-        done 
-
-poc=99
-
-        for i in `seq 10 $poc `;
-        do
-        cd $P
-        cd disp-000"$i"
-        cp ../run.sh .
-        qsub run.sh
-                echo $i
-        done
-poc=111
-
-        for i in `seq 100 $poc `;
-        do
-        cd $P
-        cd disp-00"$i"
-        cp ../run.sh .
-        qsub run.sh
-                echo $i
-        done
diff --git a/docs.it4i.cz/salomon/software/comsol.md b/docs.it4i.cz/salomon/software/comsol.md
deleted file mode 100644
index 072943b448a6ad9e34164b83e9b02f50ee1a0b01..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/comsol.md
+++ /dev/null
@@ -1,208 +0,0 @@
-COMSOL Multiphysics® 
-====================
-
-
-
-  
-
-<span><span>Introduction
-</span></span>
--------------------------
-
-<span><span>[COMSOL](http://www.comsol.com)</span></span><span><span>
-is a powerful environment for modelling and solving various engineering
-and scientific problems based on partial differential equations. COMSOL
-is designed to solve coupled or multiphysics phenomena. For many
-standard engineering problems COMSOL provides add-on products such as
-electrical, mechanical, fluid flow, and chemical
-applications.</span></span>
-
--   <span><span>[Structural Mechanics
-    Module](http://www.comsol.com/structural-mechanics-module),
-    </span></span>
-
--   <span><span>[Heat Transfer
-    Module](http://www.comsol.com/heat-transfer-module),
-    </span></span>
-
--   <span><span>[CFD
-    Module](http://www.comsol.com/cfd-module),
-    </span></span>
-
--   <span><span>[Acoustics
-    Module](http://www.comsol.com/acoustics-module),
-    </span></span>
-
--   <span><span>and [many
-    others](http://www.comsol.com/products)</span></span>
-
-<span><span>COMSOL also allows an
-</span></span><span><span><span><span>interface support for
-equation-based modelling of
-</span></span></span></span><span><span>partial differential
-equations.</span></span>
-
-<span><span>Execution
-</span></span>
-----------------------
-
-<span><span>On the clusters COMSOL is available in the latest stable
-version. There are two variants of the release:</span></span>
-
--   <span><span>**Non commercial**</span></span><span><span> or so
-    called </span></span><span><span>**EDU
-    variant**</span></span><span><span>, which can be used for research
-    and educational purposes.</span></span>
-
--   <span><span>**Commercial**</span></span><span><span> or so called
-    </span></span><span><span>**COM variant**</span></span><span><span>,
-    which can used also for commercial activities.
-    </span></span><span><span>**COM variant**</span></span><span><span>
-    has only subset of features compared to the
-    </span></span><span><span>**EDU
-    variant**</span></span><span><span> available. <span
-    class="internal-link"><span id="result_box" class="short_text"><span
-    class="hps">More</span> <span class="hps">about
-    licensing</span> will be posted <span class="hps">here
-    soon</span>.</span></span>
-    </span></span>
-
-<span><span>To load the of COMSOL load the module</span></span>
-
-``` 
-$ module load COMSOL/51-EDU
-```
-
-<span><span>By default the </span></span><span><span>**EDU
-variant**</span></span><span><span> will be loaded. If user needs other
-version or variant, load the particular version. To obtain the list of
-available versions use</span></span>
-
-``` 
-$ module avail COMSOL
-```
-
-<span><span>If user needs to prepare COMSOL jobs in the interactive mode
-it is recommend to use COMSOL on the compute nodes via PBS Pro
-scheduler. In order run the COMSOL Desktop GUI on Windows is recommended
-to use the [Virtual Network Computing
-(VNC)](../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc.html).</span></span>
-
-``` 
-$ xhost +
-$ qsub -I -X -A PROJECT_ID -q qprod -l select=1:ppn=24
-$ module load COMSOL
-$ comsol
-```
-
-<span><span>To run COMSOL in batch mode, without the COMSOL Desktop GUI
-environment, user can utilized the default (comsol.pbs) job script and
-execute it via the qsub command.</span></span>
-
-``` 
-#!/bin/bash
-#PBS -l select=3:ppn=24
-#PBS -q qprod
-#PBS -N JOB_NAME
-#PBS -A PROJECT_ID
-
-cd /scratch/work/user/$USER/ || exit
-
-echo Time is `date`
-echo Directory is `pwd`
-echo '***PBS_NODEFILE***START*******'
-cat $PBS_NODEFILE
-echo '***PBS_NODEFILE***END*********'
-
-text_nodes < cat $PBS_NODEFILE
-
-module load COMSOL
-# module load COMSOL/51-EDU
-
-ntask=$(wc -l $PBS_NODEFILE)
-
-comsol -nn $ batch -configuration /tmp –mpiarg –rmk –mpiarg pbs -tmpdir /scratch/$USER/ -inputfile name_input_f.mph -outputfile name_output_f.mph -batchlog name_log_f.log
-```
-
-<span><span>Working directory has to be created before sending the
-(comsol.pbs) job script into the queue. Input file (name_input_f.mph)
-has to be in working directory or full path to input file has to be
-specified. The appropriate path to the temp directory of the job has to
-be set by command option (-tmpdir).</span></span>
-
-LiveLink™* *for MATLAB^®^
--------------------------
-
-<span><span>COMSOL is the software package for the numerical solution of
-the partial differential equations. LiveLink for MATLAB allows
-connection to the
-COMSOL</span></span><span><span>^<span><span><span><span><span><span><span>**®**</span></span></span></span></span></span></span>^</span></span><span><span>
-API (Application Programming Interface) with the benefits of the
-programming language and computing environment of the MATLAB.
-</span></span>
-
-<span><span>LiveLink for MATLAB is available in both
-</span></span><span><span>**EDU**</span></span><span><span> and
-</span></span><span><span>**COM**</span></span><span><span>
-</span></span><span><span>**variant**</span></span><span><span> of the
-COMSOL release. On the clusters 1 commercial
-(</span></span><span><span>**COM**</span></span><span><span>) license
-and the 5 educational
-(</span></span><span><span>**EDU**</span></span><span><span>) licenses
-of LiveLink for MATLAB (please see the [ISV
-Licenses](isv_licenses.html)) are available. Following
-example shows how to start COMSOL model from MATLAB via LiveLink in the
-interactive mode.</span></span>
-
-``` 
-$ xhost +
-$ qsub -I -X -A PROJECT_ID -q qexp -l select=1:ppn=24
-$ module load MATLAB
-$ module load COMSOL
-$ comsol server MATLAB
-```
-
-<span><span>At the first time to launch the LiveLink for MATLAB
-(client-MATLAB/server-COMSOL connection) the login and password is
-requested and this information is not requested again.</span></span>
-
-<span><span>To run LiveLink for MATLAB in batch mode with
-(comsol_matlab.pbs) job script you can utilize/modify the following
-script and execute it via the qsub command.</span></span>
-
-``` 
-#!/bin/bash
-#PBS -l select=3:ppn=24
-#PBS -q qprod
-#PBS -N JOB_NAME
-#PBS -A PROJECT_ID
-
-cd /scratch/work/user/$USER || exit
-
-echo Time is `date`
-echo Directory is `pwd`
-echo '***PBS_NODEFILE***START*******'
-cat $PBS_NODEFILE
-echo '***PBS_NODEFILE***END*********'
-
-text_nodes < cat $PBS_NODEFILE
-
-module load MATLAB
-module load COMSOL/51-EDU
-
-ntask=$(wc -l $PBS_NODEFILE)
-
-comsol -nn $ server -configuration /tmp -mpiarg -rmk -mpiarg pbs -tmpdir /scratch/work/user/$USER/work &
-cd /apps/cae/COMSOL/51/mli
-matlab -nodesktop -nosplash -r "mphstart; addpath /scratch/work/user/$USER/work; test_job"
-```
-
-This example shows how to run Livelink for MATLAB with following
-configuration: 3 nodes and 16 cores per node. Working directory has to
-be created before submitting (comsol_matlab.pbs) job script into the
-queue. Input file (test_job.m) has to be in working directory or full
-path to input file has to be specified. The Matlab command option (-r
-”mphstart”) created a connection with a COMSOL server using the default
-port number.
-
-
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diff --git a/docs.it4i.cz/salomon/software/debuggers/mympiprog_32p_2014-10-15_16-56.txt b/docs.it4i.cz/salomon/software/debuggers/mympiprog_32p_2014-10-15_16-56.txt
deleted file mode 100644
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--- a/docs.it4i.cz/salomon/software/debuggers/mympiprog_32p_2014-10-15_16-56.txt
+++ /dev/null
@@ -1,50 +0,0 @@
-Executable:	mympiprog.x
-Resources:	32 processes, 2 nodes
-Machine:	cn182
-Started on:	Wed Oct 15 16:56:23 2014
-Total time:	7 seconds (0 minutes)
-Full path:	/home/user
-Notes:		
-
-Summary: mympiprog.x is CPU-bound in this configuration
-CPU:				  88.6% |========|
-MPI:				  11.4% ||
-I/O:				   0.0% |
-This application run was CPU-bound. A breakdown of this time and advice for investigating further is found in the CPU section below.
-As very little time is spent in MPI calls, this code may also benefit from running at larger scales.
-
-CPU:
-A breakdown of how the 88.6% total CPU time was spent:
-Scalar numeric ops:		   50.0% |====|
-Vector numeric ops:		   50.0% |====|
-Memory accesses:		    0.0% |
-Other:				    0.0% |
-The per-core performance is arithmetic-bound. Try to increase the amount of time spent in vectorized instructions by analyzing the compiler's vectorization reports.
-
-
-MPI:
-A breakdown of how the 11.4% total MPI time was spent:
-Time in collective calls:	  100.0% |=========|
-Time in point-to-point calls:	    0.0% |
-Effective collective rate:	1.65e+02 bytes/s
-Effective point-to-point rate:	0.00e+00 bytes/s
-Most of the time is spent in collective calls with a very low transfer rate. This suggests load imbalance is causing synchonization overhead; use an MPI profiler to investigate further.
-
-
-I/O:
-A breakdown of how the 0.0% total I/O time was spent:
-Time in reads:			    0.0% |
-Time in writes:			    0.0% |
-Effective read rate:		0.00e+00 bytes/s
-Effective write rate:		0.00e+00 bytes/s
-No time is spent in I/O operations. There's nothing to optimize here!
-
-
-Memory:
-Per-process memory usage may also affect scaling:
-Mean process memory usage:	2.33e+07 bytes
-Peak process memory usage:	2.35e+07 bytes
-Peak node memory usage:		    2.8% |
-The peak node memory usage is very low. You may be able to reduce the amount of allocation time used by running with fewer MPI processes and more data on each process.
-
-
diff --git a/docs.it4i.cz/salomon/software/debuggers/vtune-amplifier b/docs.it4i.cz/salomon/software/debuggers/vtune-amplifier
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diff --git a/docs.it4i.cz/salomon/software/intel-suite.md b/docs.it4i.cz/salomon/software/intel-suite.md
deleted file mode 100644
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--- a/docs.it4i.cz/salomon/software/intel-suite.md
+++ /dev/null
@@ -1,103 +0,0 @@
-Intel Parallel Studio 
-=====================
-
-
-
-  
-
-The Salomon cluster provides following elements of the Intel Parallel
-Studio XE
-
-  Intel Parallel Studio XE
-  -------------------------------------------------
-  Intel Compilers
-  Intel Debugger
-  Intel MKL Library
-  Intel Integrated Performance Primitives Library
-  Intel Threading Building Blocks Library
-  Intel Trace Analyzer and Collector
-  Intel Advisor
-  Intel Inspector
-
-Intel compilers
----------------
-
-The Intel compilers version 131.3 are available, via module
-iccifort/2013.5.192-GCC-4.8.3. The compilers include the icc C and C++
-compiler and the ifort fortran 77/90/95 compiler.
-
-    $ module load intel
-    $ icc -v
-    $ ifort -v
-
-Read more at the [Intel
-Compilers](intel-suite/intel-compilers.html) page.
-
-Intel debugger
---------------
-
-IDB is no longer available since Parallel Studio 2015.
-
- The intel debugger version 13.0 is available, via module intel. The
-debugger works for applications compiled with C and C++ compiler and the
-ifort fortran 77/90/95 compiler. The debugger provides java GUI
-environment. Use [X
-display](../../get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc.html)
-for running the GUI.
-
-    $ module load intel
-    $ idb
-
-Read more at the [Intel
-Debugger](intel-suite/intel-debugger.html) page.
-
-Intel Math Kernel Library
--------------------------
-
-Intel Math Kernel Library (Intel MKL) is a library of math kernel
-subroutines, extensively threaded and optimized for maximum performance.
-Intel MKL unites and provides these basic components: BLAS, LAPACK,
-ScaLapack, PARDISO, FFT, VML, VSL, Data fitting, Feast Eigensolver and
-many more.
-
-    $ module load imkl
-
-Read more at the [Intel MKL](intel-suite/intel-mkl.html)
-page.
-
-Intel Integrated Performance Primitives
----------------------------------------
-
-Intel Integrated Performance Primitives, version 7.1.1, compiled for AVX
-is available, via module ipp. The IPP is a library of highly optimized
-algorithmic building blocks for media and data applications. This
-includes signal, image and frame processing algorithms, such as FFT,
-FIR, Convolution, Optical Flow, Hough transform, Sum, MinMax and many
-more.
-
-    $ module load ipp
-
-Read more at the [Intel
-IPP](intel-suite/intel-integrated-performance-primitives.html)
-page.
-
-Intel Threading Building Blocks
--------------------------------
-
-Intel Threading Building Blocks (Intel TBB) is a library that supports
-scalable parallel programming using standard ISO C++ code. It does not
-require special languages or compilers. It is designed to promote
-scalable data parallel programming. Additionally, it fully supports
-nested parallelism, so you can build larger parallel components from
-smaller parallel components. To use the library, you specify tasks, not
-threads, and let the library map tasks onto threads in an efficient
-manner.
-
-    $ module load tbb
-
-Read more at the [Intel TBB](intel-suite/intel-tbb.html)
-page.
-
-
-
-
diff --git a/docs.it4i.cz/salomon/software/mpi-1.md b/docs.it4i.cz/salomon/software/mpi-1.md
deleted file mode 100644
index f79a1a365929218eb6d4d4177b7835eec2dc2b5c..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/mpi-1.md
+++ /dev/null
@@ -1,190 +0,0 @@
-MPI 
-===
-
-
-
-  
-
-Setting up MPI Environment
---------------------------
-
-The Salomon cluster provides several implementations of the MPI library:
-
-  -------------------------------------------------------------------------
-  MPI Library                          Thread support
-  ------------------------------------ ------------------------------------
-  **Intel MPI 4.1**                    Full thread support up to
-                                       MPI_THREAD_MULTIPLE
-
-  **Intel MPI 5.0**                    Full thread support up to
-                                       MPI_THREAD_MULTIPLE
-
-  OpenMPI 1.8.6                        Full thread support up to
-                                       MPI_THREAD_MULTIPLE, MPI-3.0
-                                       support
-
-  SGI MPT 2.12                         
-  -------------------------------------------------------------------------
-
-MPI libraries are activated via the environment modules.
-
-Look up section modulefiles/mpi in module avail
-
-    $ module avail
-    ------------------------------ /apps/modules/mpi -------------------------------
-    impi/4.1.1.036-iccifort-2013.5.192
-    impi/4.1.1.036-iccifort-2013.5.192-GCC-4.8.3
-    impi/5.0.3.048-iccifort-2015.3.187
-    impi/5.0.3.048-iccifort-2015.3.187-GNU-5.1.0-2.25
-    MPT/2.12
-    OpenMPI/1.8.6-GNU-5.1.0-2.25
-
-There are default compilers associated with any particular MPI
-implementation. The defaults may be changed, the MPI libraries may be
-used in conjunction with any compiler.
-The defaults are selected via the modules in following way
-
-  --------------------------------------------------------------------------
-  Module                   MPI                      Compiler suite
-  ------------------------ ------------------------ ------------------------
-  impi-5.0.3.048-iccifort- Intel MPI 5.0.3          
-  2015.3.187                                        
-
-  OpenMP-1.8.6-GNU-5.1.0-2 OpenMPI 1.8.6            
-  .25                                               
-  --------------------------------------------------------------------------
-
-Examples:
-
-    $ module load gompi/2015b
-
-In this example, we activate the latest OpenMPI with latest GNU
-compilers (OpenMPI 1.8.6 and GCC 5.1). Please see more information about
-toolchains in section [Environment and
-Modules](../environment-and-modules.html) .
-
-To use OpenMPI with the intel compiler suite, use
-
-    $ module load iompi/2015.03
-
-In this example, the openmpi 1.8.6 using intel compilers is activated.
-It's used "iompi" toolchain.
-
-Compiling MPI Programs
-----------------------
-
-After setting up your MPI environment, compile your program using one of
-the mpi wrappers
-
-    $ mpicc -v
-    $ mpif77 -v
-    $ mpif90 -v
-
-When using Intel MPI, use the following MPI wrappers:
-
-    $ mpicc
-    $ mpiifort 
-
-Wrappers mpif90, mpif77 that are provided by Intel MPI are designed for
-gcc and gfortran. You might be able to compile MPI code by them even
-with Intel compilers, but you might run into problems (for example,
-native MIC compilation with -mmic does not work with mpif90).
-
-Example program:
-
-    // helloworld_mpi.c
-    #include <stdio.h>
-
-    #include<mpi.h>
-
-    int main(int argc, char **argv) {
-
-    int len;
-    int rank, size;
-    char node[MPI_MAX_PROCESSOR_NAME];
-
-    // Initiate MPI
-    MPI_Init(&argc, &argv);
-    MPI_Comm_rank(MPI_COMM_WORLD,&rank);
-    MPI_Comm_size(MPI_COMM_WORLD,&size);
-
-    // Get hostame and print
-    MPI_Get_processor_name(node,&len);
-    printf("Hello world! from rank %d of %d on host %sn",rank,size,node);
-
-    // Finalize and exit
-    MPI_Finalize();
-
-    return 0;
-    }
-
-Compile the above example with
-
-    $ mpicc helloworld_mpi.c -o helloworld_mpi.x
-
-Running MPI Programs
---------------------
-
-The MPI program executable must be compatible with the loaded MPI
-module.
-Always compile and execute using the very same MPI module.
-
-It is strongly discouraged to mix mpi implementations. Linking an
-application with one MPI implementation and running mpirun/mpiexec form
-other implementation may result in unexpected errors.
-
-The MPI program executable must be available within the same path on all
-nodes. This is automatically fulfilled on the /home and /scratch
-filesystem. You need to preload the executable, if running on the local
-scratch /lscratch filesystem.
-
-### Ways to run MPI programs
-
-Optimal way to run an MPI program depends on its memory requirements,
-memory access pattern and communication pattern.
-
-Consider these ways to run an MPI program:
-1. One MPI process per node, 24 threads per process
-2. Two MPI processes per node, 12 threads per process
-3. 24 MPI processes per node, 1 thread per process.
-
-**One MPI** process per node, using 24 threads, is most useful for
-memory demanding applications, that make good use of processor cache
-memory and are not memory bound.  This is also a preferred way for
-communication intensive applications as one process per node enjoys full
-bandwidth access to the network interface. 
-
-**Two MPI** processes per node, using 12 threads each, bound to
-processor socket is most useful for memory bandwidth bound applications
-such as BLAS1 or FFT, with scalable memory demand. However, note that
-the two processes will share access to the network interface. The 12
-threads and socket binding should ensure maximum memory access bandwidth
-and minimize communication, migration and numa effect overheads.
-
-Important!  Bind every OpenMP thread to a core!
-
-In the previous two cases with one or two MPI processes per node, the
-operating system might still migrate OpenMP threads between cores. You
-want to avoid this by setting the KMP_AFFINITY or GOMP_CPU_AFFINITY
-environment variables.
-
-**24 MPI** processes per node, using 1 thread each bound to processor
-core is most suitable for highly scalable applications with low
-communication demand.
-
-### Running OpenMPI
-
-The [**OpenMPI 1.8.6**](http://www.open-mpi.org/) is
-based on OpenMPI. Read more on [how to run
-OpenMPI](mpi-1/Running_OpenMPI.html) based MPI.
-
- 
-
-The Intel MPI may run on the[Intel Xeon
-Ph](intel-xeon-phi.html)i accelerators as well. Read
-more on [how to run Intel MPI on
-accelerators](intel-xeon-phi.html).
-
-
-
-
diff --git a/docs.it4i.cz/salomon/software/numerical-languages.1.md b/docs.it4i.cz/salomon/software/numerical-languages.1.md
deleted file mode 100644
index 4317d6684c344c0464af00a86df13ab8a9d005d3..0000000000000000000000000000000000000000
--- a/docs.it4i.cz/salomon/software/numerical-languages.1.md
+++ /dev/null
@@ -1,53 +0,0 @@
-Numerical languages 
-===================
-
-Interpreted languages for numerical computations and analysis
-
-
-  
-
-Introduction
-------------
-
-This section contains a collection of high-level interpreted languages,
-primarily intended for numerical computations.
-
-Matlab
-------
-
-MATLAB^®^ is a high-level language and interactive environment for
-numerical computation, visualization, and programming.
-
-    $ module load MATLAB
-    $ matlab
-
-Read more at the [Matlab<span class="internal-link"></span>
-page](numerical-languages/matlab.html).
-
-Octave
-------
-
-GNU Octave is a high-level interpreted language, primarily intended for
-numerical computations. The Octave language is quite similar to Matlab
-so that most programs are easily portable.
-
-    $ module load Octave
-    $ octave
-
-Read more at the [Octave
-page](numerical-languages/octave.html).
-
-R
--
-
-The R is an interpreted language and environment for statistical
-computing and graphics.
-
-    $ module load R
-    $ R
-
-Read more at the [R page](numerical-languages/r.html).
-
-
-
-
diff --git a/docs.it4i.cz/salomon/software/numerical-languages/package-parallel-vignette b/docs.it4i.cz/salomon/software/numerical-languages/package-parallel-vignette
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diff --git a/docs.it4i.cz/salomon/storage.md b/docs.it4i.cz/salomon/storage.md
deleted file mode 100644
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--- a/docs.it4i.cz/salomon/storage.md
+++ /dev/null
@@ -1,534 +0,0 @@
-Storage 
-=======
-
-
-
-  
-
-Introduction
-------------
-
-There are two main shared file systems on Salomon cluster, the [<span
-class="anchor-link"><span
-class="anchor-link">HOME</span></span>](storage/storage.html#home)
-and [<span class="anchor-link"><span
-class="anchor-link">SCRATCH</span></span>](storage/storage.html#shared-filesystems).
-All login and compute nodes may access same data on shared filesystems.
-Compute nodes are also equipped with local (non-shared) scratch, ramdisk
-and tmp filesystems.
-
-Policy (in a nutshell)
-----------------------
-
-Use [HOME](storage/storage.html#home) for your most
-valuable data and programs.
-Use [WORK](storage/storage.html#work) for your large
-project files
-Use [TEMP](storage/storage.html#temp) for large scratch
-data.
-
-Do not use for
-[archiving](storage/storage.html#archiving)!
-
-[]()Archiving
--------------
-
-Please don't use shared filesystems as a backup for large amount of data
-or long-term archiving mean. The academic staff and students of research
-institutions in the Czech Republic can use [CESNET storage
-service](../anselm-cluster-documentation/storage-1/cesnet-data-storage.html),
-which is available via SSHFS.
-
-[]()Shared Filesystems
-----------------------
-
-Salomon computer provides two main shared filesystems, the [<span
-class="anchor-link">HOME
-filesystem</span>](storage/storage.html#home-filesystem)
-and the [SCRATCH
-filesystem](storage/storage.html#scratch-filesystem). The
-SCRATCH filesystem is partitioned to [WORK and TEMP
-workspaces](storage/storage.html#shared-workspaces). The
-HOME filesystem is realized as a tiered NFS disk storage. The SCRATCH
-filesystem is realized as a parallel Lustre filesystem. Both shared file
-systems are accessible via the Infiniband network. Extended ACLs are
-provided on both HOME/SCRATCH filesystems for the purpose of sharing
-data with other users using fine-grained control.
-
-### []()[]()HOME filesystem
-
-The HOME filesystem is realized as a Tiered filesystem, exported via
-NFS. The first tier has capacity 100TB, second tier has capacity 400TB.
-The filesystem is available on all login and computational nodes. The
-Home filesystem hosts the [HOME
-workspace](storage/storage.html#home).
-
-### []()[]()SCRATCH filesystem
-
-The  architecture of Lustre on Salomon is composed of two metadata
-servers (MDS) and six data/object storage servers (OSS). Accessible
-capacity is 1.69 PB, shared among all users. The SCRATCH filesystem
-hosts the [WORK and TEMP
-workspaces](storage/storage.html#shared-workspaces).
-
-<span class="listitem">Configuration of the SCRATCH Lustre storage
-</span>
-
-
-<span class="emphasis"></span><span class="emphasis"></span>
--   <span class="emphasis">SCRATCH Lustre object storage</span>
-    <div class="itemizedlist">
-
-    -   Disk array SFA12KX
-    -   540 4TB SAS 7.2krpm disks
-    -   54 OSTs of 10 disks in RAID6 (8+2)
-    -   15 hot-spare disks
-    -   4x 400GB SSD cache
-
-    
-
--   <span class="emphasis">SCRATCH Lustre metadata storage</span>
-    <div class="itemizedlist">
-
-    -   Disk array EF3015
-    -   12 600GB SAS 15krpm disks
-
-    
-
-
-
-### Understanding the Lustre Filesystems
-
-(source <http://www.nas.nasa.gov>)
-
-A user file on the Lustre filesystem can be divided into multiple chunks
-(stripes) and stored across a subset of the object storage targets
-(OSTs) (disks). The stripes are distributed among the OSTs in a
-round-robin fashion to ensure load balancing.
-
-When a client (a <span class="glossaryItem">compute <span
-class="glossaryItem">node</span></span> from your job) needs to create
-or access a file, the client queries the metadata server (<span
-class="glossaryItem">MDS</span>) and the metadata target (<span
-class="glossaryItem">MDT</span>) for the layout and location of the
-[file's
-stripes](http://www.nas.nasa.gov/hecc/support/kb/Lustre_Basics_224.html#striping).
-Once the file is opened and the client obtains the striping information,
-the <span class="glossaryItem">MDS</span> is no longer involved in the
-file I/O process. The client interacts directly with the object storage
-servers (OSSes) and OSTs to perform I/O operations such as locking, disk
-allocation, storage, and retrieval.
-
-If multiple clients try to read and write the same part of a file at the
-same time, the Lustre distributed lock manager enforces coherency so
-that all clients see consistent results.
-
-There is default stripe configuration for Salomon Lustre filesystems.
-However, users can set the following stripe parameters for their own
-directories or files to get optimum I/O performance:
-
-1.  stripe_size: the size of the chunk in bytes; specify with k, m, or
-    g to use units of KB, MB, or GB, respectively; the size must be an
-    even multiple of 65,536 bytes; default is 1MB for all Salomon Lustre
-    filesystems
-2.  stripe_count the number of OSTs to stripe across; default is 1 for
-    Salomon Lustre filesystems  one can specify -1 to use all OSTs in
-    the filesystem.
-3.  stripe_offset The index of the <span
-    class="glossaryItem">OST</span> where the first stripe is to be
-    placed; default is -1 which results in random selection; using a
-    non-default value is NOT recommended.
-
- 
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-Use the lfs getstripe for getting the stripe parameters. Use the lfs
-setstripe command for setting the stripe parameters to get optimal I/O
-performance The correct stripe setting depends on your needs and file
-access patterns. 
-
-``` 
-$ lfs getstripe dir|filename 
-$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename 
-```
-
-Example:
-
-``` 
-$ lfs getstripe /scratch/work/user/username
-/scratch/work/user/username
-stripe_count:   1 stripe_size:    1048576 stripe_offset:  -1
-
-$ lfs setstripe -c -1 /scratch/work/user/username/
-$ lfs getstripe /scratch/work/user/username/
-/scratch/work/user/username/
-stripe_count:  -1 stripe_size:    1048576 stripe_offset:  -1
-```
-
-In this example, we view current stripe setting of the
-/scratch/username/ directory. The stripe count is changed to all OSTs,
-and verified. All files written to this directory will be striped over
-all (54) OSTs
-
-Use lfs check OSTs to see the number and status of active OSTs for each
-filesystem on Salomon. Learn more by reading the man page
-
-``` 
-$ lfs check osts
-$ man lfs
-```
-
-### Hints on Lustre Stripping
-
-Increase the stripe_count for parallel I/O to the same file.
-
-When multiple processes are writing blocks of data to the same file in
-parallel, the I/O performance for large files will improve when the
-stripe_count is set to a larger value. The stripe count sets the number
-of OSTs the file will be written to. By default, the stripe count is set
-to 1. While this default setting provides for efficient access of
-metadata (for example to support the ls -l command), large files should
-use stripe counts of greater than 1. This will increase the aggregate
-I/O bandwidth by using multiple OSTs in parallel instead of just one. A
-rule of thumb is to use a stripe count approximately equal to the number
-of gigabytes in the file.
-
-Another good practice is to make the stripe count be an integral factor
-of the number of processes performing the write in parallel, so that you
-achieve load balance among the OSTs. For example, set the stripe count
-to 16 instead of 15 when you have 64 processes performing the writes.
-
-Using a large stripe size can improve performance when accessing very
-large files
-
-Large stripe size allows each client to have exclusive access to its own
-part of a file. However, it can be counterproductive in some cases if it
-does not match your I/O pattern. The choice of stripe size has no effect
-on a single-stripe file.
-
-Read more on
-<http://wiki.lustre.org/manual/LustreManual20_HTML/ManagingStripingFreeSpace.html>
-
-<span>Disk usage and quota commands</span>
-------------------------------------------
-
-<span>User quotas on the Lustre file systems (SCRATCH) can be checked
-and reviewed using following command:</span>
-
-``` 
-$ lfs quota dir
-```
-
-Example for Lustre SCRATCH directory:
-
-``` 
-$ lfs quota /scratch
-Disk quotas for user user001 (uid 1234):
-     Filesystem  kbytes   quota   limit   grace   files   quota   limit   grace
-          /scratch       8       0 100000000000       -       3       0       0       -
-Disk quotas for group user001 (gid 1234):
- Filesystem kbytes quota limit grace files quota limit grace
- /scratch       8       0       0       -       3       0       0       -
-```
-
-In this example, we view current quota size limit of 100TB and 8KB
-currently used by user001.
-
-HOME directory is mounted via NFS, so a different command must be used
-to obtain quota information:
-
-     $ quota
-
-Example output:
-
-    $ quota
-    Disk quotas for user vop999 (uid 1025):
-         Filesystem  blocks   quota   limit   grace   files   quota   limit   grace
-    home-nfs-ib.salomon.it4i.cz:/home
-                         28       0 250000000              10     0  500000
-
-To have a better understanding of where the space is exactly used, you
-can use following command to find out.
-
-``` 
-$ du -hs dir
-```
-
-Example for your HOME directory:
-
-``` 
-$ cd /home
-$ du -hs * .[a-zA-z0-9]* | grep -E "[0-9]*G|[0-9]*M" | sort -hr
-258M     cuda-samples
-15M      .cache
-13M      .mozilla
-5,5M     .eclipse
-2,7M     .idb_13.0_linux_intel64_app
-```
-
-This will list all directories which are having MegaBytes or GigaBytes
-of consumed space in your actual (in this example HOME) directory. List
-is sorted in descending order from largest to smallest
-files/directories.
-
-
-<span>To have a better understanding of previous commands, you can read
-manpages.</span>
-
-``` 
-$ man lfs
-```
-
-``` 
-$ man du 
-```
-
-Extended Access Control List (ACL)
-----------------------------------
-
-Extended ACLs provide another security mechanism beside the standard
-POSIX ACLs which are defined by three entries (for
-owner/group/others). Extended ACLs have more than the three basic
-entries. In addition, they also contain a mask entry and may contain any
-number of named user and named group entries.
-
-ACLs on a Lustre file system work exactly like ACLs on any Linux file
-system. They are manipulated with the standard tools in the standard
-manner. Below, we create a directory and allow a specific user access.
-
-``` 
-[vop999@login1.salomon ~]$ umask 027
-[vop999@login1.salomon ~]$ mkdir test
-[vop999@login1.salomon ~]$ ls -ld test
-drwxr-x--- 2 vop999 vop999 4096 Nov  5 14:17 test
-[vop999@login1.salomon ~]$ getfacl test
-# file: test
-# owner: vop999
-# group: vop999
-user::rwx
-group::r-x
-other::---
-
-[vop999@login1.salomon ~]$ setfacl -m user:johnsm:rwx test
-[vop999@login1.salomon ~]$ ls -ld test
-drwxrwx---+ 2 vop999 vop999 4096 Nov  5 14:17 test
-[vop999@login1.salomon ~]$ getfacl test
-# file: test
-# owner: vop999
-# group: vop999
-user::rwx
-user:johnsm:rwx
-group::r-x
-mask::rwx
-other::---
-```
-
-Default ACL mechanism can be used to replace setuid/setgid permissions
-on directories. Setting a default ACL on a directory (-d flag to
-setfacl) will cause the ACL permissions to be inherited by any newly
-created file or subdirectory within the directory. Refer to this page
-for more information on Linux ACL:
-
-[http://www.vanemery.com/Linux/ACL/POSIX_ACL_on_Linux.html ](http://www.vanemery.com/Linux/ACL/POSIX_ACL_on_Linux.html)
-
-
-[]()Shared Workspaces
----------------------
-
-
-
-### []()[]()HOME
-
-Users home directories /home/username reside on HOME filesystem.
-Accessible capacity is 0.5PB, shared among all users. Individual users
-are restricted by filesystem usage quotas, set to 250GB per user.
-<span>If 250GB should prove as insufficient for particular user, please
-contact</span> [support](https://support.it4i.cz/rt),
-the quota may be lifted upon request.
-
-The HOME filesystem is intended for preparation, evaluation, processing
-and storage of data generated by active Projects.
-
-The HOME  should not be used to archive data of past Projects or other
-unrelated data.
-
-The files on HOME will not be deleted until end of the [users
-lifecycle](../get-started-with-it4innovations/obtaining-login-credentials/obtaining-login-credentials.html).
-
-The workspace is backed up, such that it can be restored in case of 
-catasthropic failure resulting in significant data loss. This backup
-however is not intended to restore old versions of user data or to
-restore (accidentaly) deleted files.
-
-
-HOME workspace
-Accesspoint
-/home/username
-Capacity
-0.5PB
-Throughput
-6GB/s
-User quota
-250GB
-Protocol
-NFS, 2-Tier
-### []()WORK
-
-The WORK workspace resides on SCRATCH filesystem.  Users may create
-subdirectories and files in directories **/scratch/work/user/username**
-and **/scratch/work/project/projectid. **The /scratch/work/user/username
-is private to user, much like the home directory. The
-/scratch/work/project/projectid is accessible to all users involved in
-project projectid. <span></span>
-
-The WORK workspace is intended  to store users project data as well as
-for high performance access to input and output files. All project data
-should be removed once the project is finished. The data on the WORK
-workspace are not backed up.
-
-Files on the WORK filesystem are **persistent** (not automatically
-deleted) throughout duration of the project.
-
-The WORK workspace is hosted on SCRATCH filesystem. The SCRATCH is
-realized as Lustre parallel filesystem and is available from all login
-and computational nodes. Default stripe size is 1MB, stripe count is 1.
-There are 54 OSTs dedicated for the SCRATCH filesystem.
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-WORK workspace
-Accesspoints
-/scratch/work/user/username
-/scratch/work/user/projectid
-Capacity
-1.6P
-Throughput
-30GB/s
-User quota
-100TB
-Default stripe size
-1MB
-Default stripe count
-1
-Number of OSTs
-54
-Protocol
-Lustre
-### []()TEMP
-
-The TEMP workspace resides on SCRATCH filesystem. The TEMP workspace
-accesspoint is  /scratch/temp.  Users may freely create subdirectories
-and files on the workspace. Accessible capacity is 1.6P, shared among
-all users on TEMP and WORK. Individual users are restricted by
-filesystem usage quotas, set to 100TB per user. The purpose of this
-quota is to prevent runaway programs from filling the entire filesystem
-and deny service to other users. <span>If 100TB should prove as
-insufficient for particular user, please contact
-[support](https://support.it4i.cz/rt), the quota may be
-lifted upon request. </span>
-
-The TEMP workspace is intended  for temporary scratch data generated
-during the calculation as well as for high performance access to input
-and output files. All I/O intensive jobs must use the TEMP workspace as
-their working directory.
-
-Users are advised to save the necessary data from the TEMP workspace to
-HOME or WORK after the calculations and clean up the scratch files.
-
-Files on the TEMP filesystem that are **not accessed for more than 90
-days** will be automatically **deleted**.
-
-The TEMP workspace is hosted on SCRATCH filesystem. The SCRATCH is
-realized as Lustre parallel filesystem and is available from all login
-and computational nodes. Default stripe size is 1MB, stripe count is 1.
-There are 54 OSTs dedicated for the SCRATCH filesystem.
-
-Setting stripe size and stripe count correctly for your needs may
-significantly impact the I/O performance you experience.
-
-TEMP workspace
-Accesspoint
-/scratch/temp
-Capacity
-1.6P
-Throughput
-30GB/s
-User quota
-100TB
-Default stripe size
-1MB
-Default stripe count
-1
-Number of OSTs
-54
-Protocol
-Lustre
- 
-
-RAM disk
---------
-
-Every computational node is equipped with filesystem realized in memory,
-so called RAM disk.
-
-Use RAM disk in case you need really fast access to your data of limited
-size during your calculation.
-Be very careful, use of RAM disk filesystem is at the expense of
-operational memory.
-
-[]()The local RAM disk is mounted as /ramdisk and is accessible to user
-at /ramdisk/$PBS_JOBID directory.
-
-The local RAM disk filesystem is intended for temporary scratch data
-generated during the calculation as well as for high performance access
-to input and output files. Size of RAM disk filesystem is limited. Be
-very careful, use of RAM disk filesystem is at the expense of
-operational memory.  It is not recommended to allocate large amount of
-memory and use large amount of data in RAM disk filesystem at the same
-time.
-
-The local RAM disk directory /ramdisk/$PBS_JOBID will be deleted
-immediately after the calculation end. Users should take care to save
-the output data from within the jobscript.
-
-RAM disk
-Mountpoint
-<span class="monospace">/ramdisk</span>
-Accesspoint
-<span class="monospace">/ramdisk/$PBS_JOBID</span>
-Capacity
-120 GB
-Throughput
-over 1.5 GB/s write, over 5 GB/s read, single thread
-over 10 GB/s write, over 50 GB/s read, 16 threads
-
-User quota
-none
- 
-
-
-**Summary
-**
-----------
-
-
-  -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
-  Mountpoint                                     Usage                            Protocol      Net Capacity   Throughput   Limitations   Access                    Services
-  ---------------------------------------------- -------------------------------- ------------- -------------- ------------ ------------- ------------------------- -----------------------------
-  <span class="monospace">/home</span>           home directory                   NFS, 2-Tier   0.5 PB         6 GB/s       Quota 250GB   Compute and login nodes   backed up
-
-  <span class="monospace">/scratch/work</span>   large project files              Lustre        1.69 PB        30 GB/s      Quota        Compute and login nodes   none
-                                                                                                                            1TB                                     
-
-  <span class="monospace">/scratch/temp</span>   job temporary data               Lustre        1.69 PB        30 GB/s      Quota 100TB   Compute and login nodes   files older 90 days removed
-
-  <span class="monospace">/ramdisk</span>        job temporary data, node local   local         120GB          90 GB/s      none          Compute nodes             purged after job ends
-  -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
-
- 
-
-
-
diff --git a/html_md.sh b/html_md.sh
index c82b635d0c2076bb57117f5e9d0cc8d30a12fb22..972ae2eda73f7c5f03906c8c666d98ac25703a52 100755
--- a/html_md.sh
+++ b/html_md.sh
@@ -1,68 +1,28 @@
-#!/bin/sh
+#!/bin/bash
 
-if [ "$1" = "-d" ]; then
-	# delete all .md files
-	if [ "$2" = "-html" ]; then
-		# delete all .html files
-		find . -name "*.ht*" | 
-		while read i; 
-		do
-			rm "$i"; 	
-			echo "$i deleted"; 
-		done
-	fi
-	if [ "$2" = "-md" ]; then
-		# delete all .md files
-		find . -name "*.md" | 
-		while read i; 
-		do
-			rm "$i"; 		
-			echo "$i deleted"; 
-		done
-	fi
-fi
-if [ "$1" = "-i" ]; then
-	# create folder info
-	mkdir info;
+### DOWNLOAD AND CONVERT DOCUMENTATION
+# autor: kru0052
+# version: 1.1
+# change: converted files moved to new directory with images, deleted witch for info (-i) and deleting files (-d)
+# bugs: bad formatting tables, bad links for images and other files, stayed a few html elements
+###
 
-	find . -name "*.png" | 
-	while read i; 
-	do		
-		echo "$i" >> ./info/list_png.txt; 
-	done
-
-	find . -name "*.jpg" | 
-	while read i; 
-	do		
-		echo "$i" >> ./info/list_jpg.txt; 
-	done
+if [ "$1" = "-t" ]; then
+	# testing new function
+	
+	echo "Testing..."
 	
-	find . -name "*.md" | 
-	while read i; 
-	do		
-		echo "$i" >> ./info/list_md.txt; 
-	done
 fi
 if [ "$1" = "-w" ]; then
 	# download html pages 
-	wget -X changelog,whats-new,portal_css,portal_javascripts,++resource++jquery-ui-themes,anselm-cluster-documentation/icon.jpg -R favicon.ico,pdf.png,logo.png,background.png,application.png,search_icon.png,png.png,sh.png,touch_icon.png,anselm-cluster-documentation/icon.jpg,*js,robots.txt,*xml,RSS,download_icon.png,*zip,*rar,@@*,anselm-cluster-documentation/icon.jpg.1 --mirror --convert-links --adjust-extension --page-requisites  --no-parent https://docs.it4i.cz;
+	wget -X pbspro-documentation,changelog,whats-new,portal_css,portal_javascripts,++resource++jquery-ui-themes,anselm-cluster-documentation/icon.jpg -R favicon.ico,pdf.png,logo.png,background.png,application.png,search_icon.png,png.png,sh.png,touch_icon.png,anselm-cluster-documentation/icon.jpg,*js,robots.txt,*xml,RSS,download_icon.png,pdf,*zip,*rar,@@*,anselm-cluster-documentation/icon.jpg.1 --mirror --convert-links --adjust-extension --page-requisites  --no-parent https://docs.it4i.cz;
 fi
 if [ "$1" = "-c" ]; then
-	# delete all .md files
-	find . -name "*.md" | 
-	while read i; 
-	do
-		rm "$i"; 
-		echo "$i deleted"; 
-	done
-	
-	rm -rf info;
-
-	# html -> md
+	### convert html to md
 	find . -name "*.ht*" | 
 	while read i; 
 	do 
-		# filtering html
+		# first filtering html 
 		echo "$i"; 
 		printf "\t\tfiltering html files...\n";
 		
@@ -78,23 +38,23 @@ if [ "$1" = "-c" ]; then
 		pandoc -f html -t markdown+pipe_tables-grid_tables "${i%.*}TMP.html" -o "${i%.*}.md"; 
 		rm "${i%.*}TMP.html";
 
-		# create filter_auto
+		# create filter_auto (css, html, ...)
 		grep -o -P '(?<={).*(?=})' "${i%.*}.md" | sort -u | sed '/{/d' | sed '/\$/d' >> filter_auto;
 		sort -u filter_auto -o filter_auto; 
 
-		# exceptions filter_auto
+		# exceptions filter_auto 
 		(while read y; 
 		do 
 			# search and delete according with filter_auto
 			sed -e 's/'"$y"'//g' filter_auto > filter_autoTMP;
 			cat filter_autoTMP > filter_auto;
-		done) < exceptions_filter_auto
+		done) < ./source/exceptions_filter_auto
 	
 		# text filtering of html, css, ...
 		printf "\t\tautomatic filter...\n"
 		(while read y; 
 		do 
-			# search and delete according with filter_auto
+			# search and delete according with filter_auto and erase unwanted elements
 			sed -e 's/{'"$y"'}//g' "${i%.*}.md" | sed -e 's/\\//g' | sed -e 's/^: //g' | sed -e 's/<\/div>//g' | sed '/^<div/d' | sed -e 's/^Obsah//g' | sed -e 's/{#putty---before-we-start-//g' | sed -e 's/ssh-connection style="text-alignstart; "}//g'| awk -v RS='\n\n\n\n\n' 1 > "${i%.*}TMP.md";
 			cat "${i%.*}TMP.md" > "${i%.*}.md";
 		done) < filter_auto
@@ -102,6 +62,8 @@ if [ "$1" = "-c" ]; then
 		# delete temporary files
 		rm "${i%.*}TMP.md";		
 	done
+	
+	# delete empty files, duplicate files and unwanted files
 	find -type f -size -10c | 
 	while read i; 
 	do
@@ -110,5 +72,45 @@ if [ "$1" = "-c" ]; then
 	done
 	rm filter_autoTMP
 	rm filter_auto
-	rm docs.it4i.cz/robots.txt
+
+	(while read i; 
+	do		
+		if [ -f $i ];
+		then
+		   rm "$i";
+		fi
+		
+	done) < ./source/list_rm.txt
+	
+	### create new folder and move converted files
+	# erasing the previous transfer
+	rm -rf converted;
+	rm -rf info;
+	
+	# create folder info and view all files and folder
+	mkdir info;
+	find ./docs.it4i.cz -name "*.png" -type f> ./info/list_png.txt;
+	find ./docs.it4i.cz -name "*.jpg" -type f> ./info/list_jpg.txt;
+	find ./docs.it4i.cz -name "*.jpeg" -type f>> ./info/list_jpg.txt;
+	find ./docs.it4i.cz -name "*.md" -type f> ./info/list_md.txt; 
+	find ./docs.it4i.cz -type d | sort > ./info/list_folder.txt
+	
+	# exists file for move?	
+	if [ -f ./info/list_md.txt ];
+	then  	
+		mkdir converted;
+		(while read i; 
+		do		
+			mkdir "./converted/$i";
+		done) < ./source/list_folder.txt
+	
+		# move md files to new folders
+		while read a b ; do mv "$a" "./converted/$b"; done < <(paste ./info/list_md.txt ./source/list_md_mv.txt)
+		# copy jpg and jpeg to new folders
+		while read a b ; do cp "$a" "./converted/$b"; done < <(paste ./info/list_jpg.txt ./source/list_jpg_mv.txt)
+		# copy png files to new folders
+		while read a b ; do cp "$a" "./converted/$b"; done < <(paste ./info/list_png.txt ./source/list_png_mv.txt)
+	else
+	   echo "list_md.txt not exists!!!!!"
+	fi
 fi
diff --git a/info/list_jpg.txt b/info/list_jpg.txt
deleted file mode 100644
index 59a233ee796753049ff3bc4543171874ade4fd02..0000000000000000000000000000000000000000
--- a/info/list_jpg.txt
+++ /dev/null
@@ -1,24 +0,0 @@
-./docs.it4i.cz/salomon/gnome_screen.jpg
-./docs.it4i.cz/salomon/software/ansys/Fluent_Licence_2.jpg
-./docs.it4i.cz/salomon/software/ansys/Fluent_Licence_4.jpg
-./docs.it4i.cz/salomon/software/ansys/Fluent_Licence_1.jpg
-./docs.it4i.cz/salomon/software/ansys/Fluent_Licence_3.jpg
-./docs.it4i.cz/anselm-cluster-documentation/Anselmprofile.jpg
-./docs.it4i.cz/anselm-cluster-documentation/loginwithprofile.jpg
-./docs.it4i.cz/anselm-cluster-documentation/instalationfile.jpg
-./docs.it4i.cz/anselm-cluster-documentation/anyconnecticon.jpg
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diff --git a/exceptions_filter_auto b/source/exceptions_filter_auto
similarity index 100%
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new file mode 100644
index 0000000000000000000000000000000000000000..8852d0717b380f950aff65f91e7794447b61955c
--- /dev/null
+++ b/source/list_folder.txt
@@ -0,0 +1,36 @@
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+./docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution
+./docs.it4i.cz/anselm-cluster-documentation/software
+./docs.it4i.cz/anselm-cluster-documentation/software/ansys
+./docs.it4i.cz/anselm-cluster-documentation/software/chemistry
+./docs.it4i.cz/anselm-cluster-documentation/software/comsol
+./docs.it4i.cz/anselm-cluster-documentation/software/debuggers
+./docs.it4i.cz/anselm-cluster-documentation/software/intel-suite
+./docs.it4i.cz/anselm-cluster-documentation/software/mpi-1
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries
+./docs.it4i.cz/anselm-cluster-documentation/software/omics-master-1
+./docs.it4i.cz/anselm-cluster-documentation/storage-1
+./docs.it4i.cz/get-started-with-it4innovations
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer
+./docs.it4i.cz/get-started-with-it4innovations/obtaining-login-credentials
+./docs.it4i.cz/salomon
+./docs.it4i.cz/salomon/accessing-the-cluster
+./docs.it4i.cz/salomon/hardware-overview-1
+./docs.it4i.cz/salomon/network-1
+./docs.it4i.cz/salomon/resource-allocation-and-job-execution
+./docs.it4i.cz/salomon/software
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+./docs.it4i.cz/salomon/software/intel-suite
+./docs.it4i.cz/salomon/software/mpi-1
+./docs.it4i.cz/salomon/software/numerical-languages
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new file mode 100644
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+./docs.it4i.cz/anselm-cluster-documentation/software/ansys/Fluent_Licence_3.jpg
+./docs.it4i.cz/anselm-cluster-documentation/firstrun.jpg
+./docs.it4i.cz/anselm-cluster-documentation/successfullconnection.jpg
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diff --git a/info/list_md.txt b/source/list_md_mv.txt
similarity index 77%
rename from info/list_md.txt
rename to source/list_md_mv.txt
index 41b8f8f1a32e5e083232f69dd844d1af0358d7ca..cfb0e704abd6fe343808fcb11fc62657766ff6ac 100644
--- a/info/list_md.txt
+++ b/source/list_md_mv.txt
@@ -1,42 +1,30 @@
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@@ -50,7 +38,6 @@
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@@ -58,10 +45,8 @@
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-./docs.it4i.cz/salomon/software/debuggers.1.md
-./docs.it4i.cz/salomon/software/mpi-1.md
 ./docs.it4i.cz/salomon/software/intel-suite/intel-compilers.md
 ./docs.it4i.cz/salomon/software/intel-suite/intel-inspector.md
 ./docs.it4i.cz/salomon/software/intel-suite/intel-integrated-performance-primitives.md
@@ -71,10 +56,10 @@
 ./docs.it4i.cz/salomon/software/intel-suite/intel-parallel-studio-introduction.md
 ./docs.it4i.cz/salomon/software/intel-suite/intel-tbb.md
 ./docs.it4i.cz/salomon/software/intel-suite/intel-debugger.md
+./docs.it4i.cz/salomon/software/debuggers.md
 ./docs.it4i.cz/salomon/software/java.md
 ./docs.it4i.cz/salomon/software/comsol/comsol-multiphysics.md
 ./docs.it4i.cz/salomon/software/comsol/licensing-and-available-versions.md
-./docs.it4i.cz/salomon/software/intel-suite.md
 ./docs.it4i.cz/salomon/software/ansys/ansys-mechanical-apdl.md
 ./docs.it4i.cz/salomon/software/ansys/setting-license-preferences.md
 ./docs.it4i.cz/salomon/software/ansys/workbench.md
@@ -83,19 +68,13 @@
 ./docs.it4i.cz/salomon/software/ansys/ansys-cfx.md
 ./docs.it4i.cz/salomon/software/ansys/ansys-products-mechanical-fluent-cfx-mapdl.md
 ./docs.it4i.cz/salomon/software/ansys/ansys-ls-dyna.md
-./docs.it4i.cz/salomon/software/numerical-languages.1.md
 ./docs.it4i.cz/salomon/storage/cesnet-data-storage.md
 ./docs.it4i.cz/salomon/storage/storage.md
-./docs.it4i.cz/salomon/hardware-overview-1.1.md
 ./docs.it4i.cz/salomon/accessing-the-cluster.md
-./docs.it4i.cz/salomon/compute-nodes.md
 ./docs.it4i.cz/salomon/index.md
 ./docs.it4i.cz/salomon/hardware-overview-1/hardware-overview.md
-./docs.it4i.cz/salomon/network-1.md
-./docs.it4i.cz/anselm.md
 ./docs.it4i.cz/anselm-cluster-documentation/introduction.md
 ./docs.it4i.cz/anselm-cluster-documentation/hardware-overview.md
-./docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution.md
 ./docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/introduction.md
 ./docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/resources-allocation-policy.md
 ./docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/job-submission-and-execution.md
@@ -105,12 +84,9 @@
 ./docs.it4i.cz/anselm-cluster-documentation/storage-1/cesnet-data-storage.md
 ./docs.it4i.cz/anselm-cluster-documentation/storage-1/storage.md
 ./docs.it4i.cz/anselm-cluster-documentation/environment-and-modules.md
-./docs.it4i.cz/anselm-cluster-documentation/storage.md
 ./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/outgoing-connections.md
 ./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/shell-and-data-access/shell-and-data-access.md
 ./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/vpn-access.md
-./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/x-window-and-vnc.md
-./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/storage-1.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/nvidia-cuda.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/papi.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/scalasca.md
@@ -124,7 +100,7 @@
 ./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/vampir.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/total-view.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
-./docs.it4i.cz/anselm-cluster-documentation/software/virtualization/virtualization.md
+./docs.it4i.cz/anselm-cluster-documentation/software/kvirtualization.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/gpi2.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/paraview.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages/introduction.md
@@ -133,27 +109,23 @@
 ./docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages/matlab.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages/r.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/operating-system.md
-./docs.it4i.cz/anselm-cluster-documentation/software/comsol.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/mpi-1/mpi.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/mpi-1/mpi4py-mpi-for-python.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/mpi-1/running-mpich2.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/mpi-1/Running_OpenMPI.md
-./docs.it4i.cz/anselm-cluster-documentation/software/anselm-cluster-documentation/software/mpi-1/running-mpich2.md
-./docs.it4i.cz/anselm-cluster-documentation/software/virtualization.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/intel-xeon-phi.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/chemistry/molpro.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/chemistry/nwchem.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/ansys.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/isv_licenses.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/compilers.md
-./docs.it4i.cz/anselm-cluster-documentation/software/debuggers.1.md
-./docs.it4i.cz/anselm-cluster-documentation/software/mpi-1.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/intel-suite/intel-compilers.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/intel-suite/intel-integrated-performance-primitives.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/intel-suite/intel-mkl.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/intel-suite/intel-parallel-studio-introduction.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/intel-suite/intel-tbb.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/intel-suite/intel-debugger.md
+./docs.it4i.cz/anselm-cluster-documentation/software/debuggers.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/omics-master-1/priorization-component-bierapp.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/omics-master-1/diagnostic-component-team.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/omics-master-1/overview.md
@@ -165,9 +137,7 @@
 ./docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-fluent.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-cfx.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/ansys/ls-dyna.md
-./docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-products-mechanical-fluent-cfx-mapdl.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-ls-dyna.md
-./docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages.1.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/magma-for-intel-xeon-phi.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/gsl.md
 ./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/trilinos.md
@@ -177,10 +147,6 @@
 ./docs.it4i.cz/anselm-cluster-documentation/software/numerical-libraries/petsc.md
 ./docs.it4i.cz/anselm-cluster-documentation/network.md
 ./docs.it4i.cz/anselm-cluster-documentation/remote-visualization.md
-./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster.md
 ./docs.it4i.cz/anselm-cluster-documentation/compute-nodes.md
-./docs.it4i.cz/anselm-cluster-documentation/storage-1.md
-./docs.it4i.cz/salomon.md
-./docs.it4i.cz/vpn-connection-fail-in-win-8.1.md
-./docs.it4i.cz/anselm-cluster-documentation.md
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/vpn-connection-fail-in-win-8.1.md
 ./docs.it4i.cz/index.md
diff --git a/source/list_png_mv.txt b/source/list_png_mv.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bead13a74ab4b7f0a1a2d5a6bd6cd797104a514d
--- /dev/null
+++ b/source/list_png_mv.txt
@@ -0,0 +1,64 @@
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/TightVNC_login.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/putty-tunnel.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/gnome-terminal.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/8e80a92f-f691-4d92-8e62-344128dcc00b.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/gnome-compute-nodes-over-vnc.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/gdmdisablescreensaver.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/0f5b58e3-253c-4f87-a3b2-16f75cbf090f.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/XWinlistentcp.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_004V.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/20150312_143443.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PageantV.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_001V.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuTTY_host_Salomon.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuTTY_keyV.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_005V.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuTTY_save_Salomon.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygeneratorV.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuTTY_open_Salomon.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_002V.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/PuttyKeygenerator_006V.png
+./docs.it4i.cz/salomon/copy_of_vpn_web_install_3.png
+./docs.it4i.cz/salomon/vpn_contacting.png
+./docs.it4i.cz/salomon/resource-allocation-and-job-execution/rswebsalomon.png
+./docs.it4i.cz/salomon/vpn_successfull_connection.png
+./docs.it4i.cz/salomon/vpn_web_install_2.png
+./docs.it4i.cz/salomon/vpn_web_login_2.png
+./docs.it4i.cz/salomon/7758b792-24eb-48dc-bf72-618cda100fda.png
+./docs.it4i.cz/salomon/network-1/IBsingleplanetopologyAcceleratednodessmall.png
+./docs.it4i.cz/salomon/network-1/IBsingleplanetopologyICEXMcellsmall.png
+./docs.it4i.cz/salomon/network-1/Salomon_IB_topology.png
+./docs.it4i.cz/salomon/network-1/7D_Enhanced_hypercube.png
+./docs.it4i.cz/salomon/vpn_web_login.png
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+./docs.it4i.cz/salomon/software/debuggers/totalview2.png
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+./docs.it4i.cz/salomon/vpn_contacting_https_cluster.png
+./docs.it4i.cz/salomon/vpn_web_download.png
+./docs.it4i.cz/salomon/vpn_web_download_2.png
+./docs.it4i.cz/salomon/vpn_contacting_https.png
+./docs.it4i.cz/salomon/vpn_web_install_4.png
+./docs.it4i.cz/anselm-cluster-documentation/bb4cedff-4cb6-402b-ac79-039186fe5df3.png
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+./docs.it4i.cz/anselm-cluster-documentation/turbovncclientsetting.png
+./docs.it4i.cz/anselm-cluster-documentation/Authorization_chain.png
+./docs.it4i.cz/anselm-cluster-documentation/scheme.png
+./docs.it4i.cz/anselm-cluster-documentation/quality3.png
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+./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/ddt1.png
+./docs.it4i.cz/anselm-cluster-documentation/software/debuggers/totalview1.png
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages/Matlab.png
+./docs.it4i.cz/anselm-cluster-documentation/quality1.png
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/vpnuiV.png
diff --git a/source/list_rm.txt b/source/list_rm.txt
new file mode 100644
index 0000000000000000000000000000000000000000..023765227417e537248fc43300d481c0684672e7
--- /dev/null
+++ b/source/list_rm.txt
@@ -0,0 +1,36 @@
+./docs.it4i.cz/links.md
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/cygwin-and-x11-forwarding.md
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface/x-window-system/x-window-and-vnc.md
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/graphical-user-interface.md
+./docs.it4i.cz/salomon/resource-allocation-and-job-execution.md
+./docs.it4i.cz/salomon/list_of_modules.md
+./docs.it4i.cz/salomon/network-1/ib-single-plane-topology/schematic-representation-of-the-salomon-cluster-ib-single-plain-topology-hypercube-dimension-0.md
+./docs.it4i.cz/salomon/storage.md
+./docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface/vnc.md
+./docs.it4i.cz/salomon/accessing-the-cluster/shell-and-data-access/shell-and-data-access.md
+./docs.it4i.cz/salomon/accessing-the-cluster/graphical-user-interface.md
+./docs.it4i.cz/salomon/software/comsol.md
+./docs.it4i.cz/salomon/software/mpi-1.md
+./docs.it4i.cz/salomon/software/intel-suite.md
+./docs.it4i.cz/salomon/software/numerical-languages.1.md
+./docs.it4i.cz/salomon/hardware-overview-1.1.md
+./docs.it4i.cz/salomon/compute-nodes.md
+./docs.it4i.cz/salomon/network-1.md
+./docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution.md
+./docs.it4i.cz/anselm-cluster-documentation/storage.md
+./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/x-window-and-vnc.md
+./docs.it4i.cz/anselm-cluster-documentation/accessing-the-cluster/storage-1.md
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+./docs.it4i.cz/anselm-cluster-documentation/software/virtualization.md
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+./docs.it4i.cz/anselm-cluster-documentation/software/ansys/ansys-products-mechanical-fluent-cfx-mapdl.md
+./docs.it4i.cz/anselm-cluster-documentation/software/numerical-languages.1.md
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+./docs.it4i.cz/anselm-cluster-documentation/storage-1.md
+./docs.it4i.cz/salomon.md
+./docs.it4i.cz/anselm-cluster-documentation.md
+./docs.it4i.cz/anselm.md
+./docs.it4i.cz/get-started-with-it4innovations/accessing-the-clusters/shell-access-and-data-transfer/putty.1.md
+./docs.it4i.cz/robots.txt
+./docs.it4i.cz/anselm-cluster-documentation/icon.jpg