diff --git a/docs.it4i/anselm-cluster-documentation/software/comsol-multiphysics.md b/docs.it4i/anselm-cluster-documentation/software/comsol-multiphysics.md
index a8cb53cce46a7caef11dc886f34dae875edbce9a..457c1aa8fc5d34a4429d5684f977da70d7683b4a 100644
--- a/docs.it4i/anselm-cluster-documentation/software/comsol-multiphysics.md
+++ b/docs.it4i/anselm-cluster-documentation/software/comsol-multiphysics.md
@@ -1,4 +1,4 @@
-# COMSOL Multiphysics
+# COMSOL Multiphysics
## Introduction
diff --git a/docs.it4i/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md b/docs.it4i/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
index 7fb40a45b9080a63035decb94ef9f52890e3495f..f9e8e88dcaf2186ea59519f7a7b31305fd1287d6 100644
--- a/docs.it4i/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
+++ b/docs.it4i/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
@@ -52,7 +52,7 @@ Sample output:
-- System Read Throughput(MB/s): 4.93 --
-- System Write Throughput(MB/s): 3.43 --
-- System Memory Throughput(MB/s): 8.35 --
- ---------------------------------------||---------------------------------------
+ ---------------------------------------||---------------------------------------
```
### Pcm-Msr
diff --git a/docs.it4i/anselm-cluster-documentation/software/debuggers/papi.md b/docs.it4i/anselm-cluster-documentation/software/debuggers/papi.md
index 4326aa87ea6b2d0c5efcfb85d46794607303ac4a..87595f5ef931937f6e4af6a8e3e1d94684194cfa 100644
--- a/docs.it4i/anselm-cluster-documentation/software/debuggers/papi.md
+++ b/docs.it4i/anselm-cluster-documentation/software/debuggers/papi.md
@@ -124,7 +124,7 @@ The following example prints MFLOPS rate of a naive matrix-matrix multiplication
/* Initialize the Matrix arrays */
for ( i=0; i<SIZE*SIZE; i++ ){
mresult[0][i] = 0.0;
- matrixa[0][i] = matrixb[0][i] = rand()*(float)1.1;
+ matrixa[0][i] = matrixb[0][i] = rand()*(float)1.1;
}
/* Setup PAPI library and begin collecting data from the counters */
diff --git a/docs.it4i/anselm-cluster-documentation/software/debuggers/total-view.md b/docs.it4i/anselm-cluster-documentation/software/debuggers/total-view.md
index 635b51bd1e45f73a7d100011b1af88c027215a4a..ca526f248c8515d58661bb1336b43889a8d9de6a 100644
--- a/docs.it4i/anselm-cluster-documentation/software/debuggers/total-view.md
+++ b/docs.it4i/anselm-cluster-documentation/software/debuggers/total-view.md
@@ -121,7 +121,7 @@ The source code of this function can be also found in
```
!!! note
- You can also add only following line to you ~/.tvdrc file instead of the entire function:
+ You can also add only following line to you ~/.tvdrc file instead of the entire function:
**source /apps/mpi/openmpi/intel/1.6.5/etc/openmpi-totalview.tcl**
You need to do this step only once.
diff --git a/docs.it4i/anselm-cluster-documentation/software/mpi/mpi.md b/docs.it4i/anselm-cluster-documentation/software/mpi/mpi.md
index 6c391d7b1b08027c619239b3f7b2cb504589a972..bc60afb16ebee9968d942c0e4189f79705118276 100644
--- a/docs.it4i/anselm-cluster-documentation/software/mpi/mpi.md
+++ b/docs.it4i/anselm-cluster-documentation/software/mpi/mpi.md
@@ -108,7 +108,7 @@ Compile the above example with
## Running MPI Programs
!!! note
- The MPI program executable must be compatible with the loaded MPI module.
+ The MPI program executable must be compatible with the loaded MPI module.
Always compile and execute using the very same MPI module.
It is strongly discouraged to mix mpi implementations. Linking an application with one MPI implementation and running mpirun/mpiexec form other implementation may result in unexpected errors.
diff --git a/docs.it4i/anselm-cluster-documentation/storage.md b/docs.it4i/anselm-cluster-documentation/storage.md
index a7404b3fe34164f87ce454c249636ecc17d2d13c..c521ccb7c6b97c4a122bfa55a6a676310021e127 100644
--- a/docs.it4i/anselm-cluster-documentation/storage.md
+++ b/docs.it4i/anselm-cluster-documentation/storage.md
@@ -29,11 +29,11 @@ There is default stripe configuration for Anselm Lustre filesystems. However, us
!!! note
Setting stripe size and stripe count correctly for your needs may significantly impact the I/O performance you experience.
-Use the lfs getstripe for getting the stripe parameters. Use the lfs setstripe command for setting the stripe parameters to get optimal I/O performance The correct stripe setting depends on your needs and file access patterns.
+Use the lfs getstripe for getting the stripe parameters. Use the lfs setstripe command for setting the stripe parameters to get optimal I/O performance The correct stripe setting depends on your needs and file access patterns.
```bash
$ lfs getstripe dir|filename
-$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename
+$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename
```
Example:
diff --git a/docs.it4i/salomon/.storage.md.swp b/docs.it4i/salomon/.storage.md.swp
new file mode 100644
index 0000000000000000000000000000000000000000..209e1f9e5f29ed6cc6503bce2a4a61143b191edc
Binary files /dev/null and b/docs.it4i/salomon/.storage.md.swp differ
diff --git a/docs.it4i/salomon/job-submission-and-execution.md b/docs.it4i/salomon/job-submission-and-execution.md
index 0fb2fa0408bc4dd5130410bd54086d2742734a79..e7a4c4ff0039815504804e9f5fcb30959e8713e6 100644
--- a/docs.it4i/salomon/job-submission-and-execution.md
+++ b/docs.it4i/salomon/job-submission-and-execution.md
@@ -138,7 +138,7 @@ Nodes directly connected to the same InifiBand switch can communicate most effic
!!! note
We recommend allocating compute nodes of a single switch when the best possible computational network performance is required to run job efficiently.
-Nodes directly connected to the one InifiBand switch can be allocated using node grouping on PBS resource attribute switch.
+Nodes directly connected to the one InifiBand switch can be allocated using node grouping on PBS resource attribute switch.
In this example, we request all 9 nodes directly connected to the same switch using node grouping placement.
diff --git a/docs.it4i/salomon/shell-and-data-access.md b/docs.it4i/salomon/shell-and-data-access.md
index 438e60ccadd29fc69b670a1c3351bf2d56a72a35..93b68abaaf23e38eeff31e220f66a39d22456a8b 100644
--- a/docs.it4i/salomon/shell-and-data-access.md
+++ b/docs.it4i/salomon/shell-and-data-access.md
@@ -41,13 +41,13 @@ On **Windows**, use [PuTTY ssh client](../get-started-with-it4innovations/access
After logging in, you will see the command prompt:
```bash
- _____ _
- / ____| | |
- | (___ __ _| | ___ _ __ ___ ___ _ __
- \___ \ / _` | |/ _ \| '_ ` _ \ / _ \| '_ \
+ _____ _
+ / ____| | |
+ | (___ __ _| | ___ _ __ ___ ___ _ __
+ \___ \ / _` | |/ _ \| '_ ` _ \ / _ \| '_ \
____) | (_| | | (_) | | | | | | (_) | | | |
|_____/ \__,_|_|\___/|_| |_| |_|\___/|_| |_|
-
+
http://www.it4i.cz/?lang=en
diff --git a/docs.it4i/salomon/software/debuggers/total-view.md b/docs.it4i/salomon/software/debuggers/total-view.md
index 17a2d42344ffa0ccc1c34ec4c369bfcca8341e79..a7642fa193b9d31dd2d4d2c2b974f3c1a79dd769 100644
--- a/docs.it4i/salomon/software/debuggers/total-view.md
+++ b/docs.it4i/salomon/software/debuggers/total-view.md
@@ -80,7 +80,7 @@ To debug a serial code use:
To debug a parallel code compiled with **OpenMPI** you need to setup your TotalView environment:
-!!! hint
+!!! hint
To be able to run parallel debugging procedure from the command line without stopping the debugger in the mpiexec source code you have to add the following function to your **~/.tvdrc** file.
```bash
diff --git a/docs.it4i/salomon/software/intel-xeon-phi.md b/docs.it4i/salomon/software/intel-xeon-phi.md
index 65457058ce668c1ee7a92f1d19bbceec427dc051..f5085912c02372254027ac1ff9390fabd69bfadc 100644
--- a/docs.it4i/salomon/software/intel-xeon-phi.md
+++ b/docs.it4i/salomon/software/intel-xeon-phi.md
@@ -518,7 +518,7 @@ The compilation command for this example is:
$ g++ cmdoptions.cpp gemm.cpp ../common/basic.cpp ../common/cmdparser.cpp ../common/oclobject.cpp -I../common -lOpenCL -o gemm -I/apps/intel/opencl/include/
```
-To see the performance of Intel Xeon Phi performing the DGEMM run the example as follows:
+To see the performance of Intel Xeon Phi performing the DGEMM run the example as follows:
```bash
./gemm -d 1
@@ -715,7 +715,7 @@ The output should be again similar to:
Hello world from process 0 of 4 on host cn207-mic0
```
-!!! hint
+!!! hint
**"mpiexec.hydra"** requires a file the MIC filesystem. If the file is missing please contact the system administrators.
A simple test to see if the file is present is to execute:
diff --git a/docs.it4i/salomon/software/numerical-languages/octave.md b/docs.it4i/salomon/software/numerical-languages/octave.md
index eda9196ae8972e946d32361067e3bd43c4762721..1f96d0849dd4c0ffc1928bcb2406607600f06fd9 100644
--- a/docs.it4i/salomon/software/numerical-languages/octave.md
+++ b/docs.it4i/salomon/software/numerical-languages/octave.md
@@ -29,7 +29,7 @@ To run octave in batch mode, write an octave script, then write a bash jobscript
mkdir -p /scratch/work/user/$USER/$PBS_JOBID
cd /scratch/work/user/$USER/$PBS_JOBID || exit
- # copy input file to scratch
+ # copy input file to scratch
cp $PBS_O_WORKDIR/octcode.m .
# load octave module
diff --git a/docs.it4i/salomon/storage.md b/docs.it4i/salomon/storage.md
index 7d1d431f8ad41b11e24888a085bc81acd2cac1e6..fd942bd97cd53410c206ce1daf2b8c8497b546a1 100644
--- a/docs.it4i/salomon/storage.md
+++ b/docs.it4i/salomon/storage.md
@@ -66,8 +66,8 @@ There is default stripe configuration for Salomon Lustre file systems. However,
Use the lfs getstripe for getting the stripe parameters. Use the lfs setstripe command for setting the stripe parameters to get optimal I/O performance The correct stripe setting depends on your needs and file access patterns.
```bash
-$ lfs getstripe dir|filename
-$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename
+$ lfs getstripe dir | filename
+$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir | filename
```
Example:
diff --git a/docs.it4i/software/lmod.md b/docs.it4i/software/lmod.md
index 66ed012edbd0fe1bffd0ccbb1dcab4c2783f4ae7..e28164a36a1473cd6403b1eda881206177f4b8d6 100644
--- a/docs.it4i/software/lmod.md
+++ b/docs.it4i/software/lmod.md
@@ -75,7 +75,7 @@ $ ml spider gcc
GCC:
---------------------------------------------------------------------------------
Description:
- The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/
+ The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/
Versions:
GCC/4.4.7-system
@@ -118,7 +118,7 @@ $ module spider GCC/6.2.0-2.27
GCC: GCC/6.2.0-2.27
--------------------------------------------------------------------------------------------------------------
Description:
- The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/
+ The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/
This module can be loaded directly: module load GCC/6.2.0-2.27