From fe8a0e6b93537f081ae559acf4ca28dd5cfd9315 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Krup=C4=8D=C3=ADk?= <lukas.krupcik@vsb.cz>
Date: Fri, 27 Jan 2017 10:57:17 +0100
Subject: [PATCH] sed 's/[ \t]*$//'
---
.../software/comsol-multiphysics.md | 2 +-
.../intel-performance-counter-monitor.md | 2 +-
.../software/debuggers/papi.md | 2 +-
.../software/debuggers/total-view.md | 2 +-
.../software/mpi/mpi.md | 2 +-
.../anselm-cluster-documentation/storage.md | 4 ++--
docs.it4i/salomon/.storage.md.swp | Bin 0 -> 36864 bytes
.../salomon/job-submission-and-execution.md | 2 +-
docs.it4i/salomon/shell-and-data-access.md | 10 +++++-----
.../salomon/software/debuggers/total-view.md | 2 +-
docs.it4i/salomon/software/intel-xeon-phi.md | 4 ++--
.../software/numerical-languages/octave.md | 2 +-
docs.it4i/salomon/storage.md | 4 ++--
docs.it4i/software/lmod.md | 4 ++--
14 files changed, 21 insertions(+), 21 deletions(-)
create mode 100644 docs.it4i/salomon/.storage.md.swp
diff --git a/docs.it4i/anselm-cluster-documentation/software/comsol-multiphysics.md b/docs.it4i/anselm-cluster-documentation/software/comsol-multiphysics.md
index a8cb53cce..457c1aa8f 100644
--- a/docs.it4i/anselm-cluster-documentation/software/comsol-multiphysics.md
+++ b/docs.it4i/anselm-cluster-documentation/software/comsol-multiphysics.md
@@ -1,4 +1,4 @@
-# COMSOL Multiphysics
+# COMSOL Multiphysics
## Introduction
diff --git a/docs.it4i/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md b/docs.it4i/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
index 7fb40a45b..f9e8e88dc 100644
--- a/docs.it4i/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
+++ b/docs.it4i/anselm-cluster-documentation/software/debuggers/intel-performance-counter-monitor.md
@@ -52,7 +52,7 @@ Sample output:
-- System Read Throughput(MB/s): 4.93 --
-- System Write Throughput(MB/s): 3.43 --
-- System Memory Throughput(MB/s): 8.35 --
- ---------------------------------------||---------------------------------------
+ ---------------------------------------||---------------------------------------
```
### Pcm-Msr
diff --git a/docs.it4i/anselm-cluster-documentation/software/debuggers/papi.md b/docs.it4i/anselm-cluster-documentation/software/debuggers/papi.md
index 4326aa87e..87595f5ef 100644
--- a/docs.it4i/anselm-cluster-documentation/software/debuggers/papi.md
+++ b/docs.it4i/anselm-cluster-documentation/software/debuggers/papi.md
@@ -124,7 +124,7 @@ The following example prints MFLOPS rate of a naive matrix-matrix multiplication
/* Initialize the Matrix arrays */
for ( i=0; i<SIZE*SIZE; i++ ){
mresult[0][i] = 0.0;
- matrixa[0][i] = matrixb[0][i] = rand()*(float)1.1;
+ matrixa[0][i] = matrixb[0][i] = rand()*(float)1.1;
}
/* Setup PAPI library and begin collecting data from the counters */
diff --git a/docs.it4i/anselm-cluster-documentation/software/debuggers/total-view.md b/docs.it4i/anselm-cluster-documentation/software/debuggers/total-view.md
index 635b51bd1..ca526f248 100644
--- a/docs.it4i/anselm-cluster-documentation/software/debuggers/total-view.md
+++ b/docs.it4i/anselm-cluster-documentation/software/debuggers/total-view.md
@@ -121,7 +121,7 @@ The source code of this function can be also found in
```
!!! note
- You can also add only following line to you ~/.tvdrc file instead of the entire function:
+ You can also add only following line to you ~/.tvdrc file instead of the entire function:
**source /apps/mpi/openmpi/intel/1.6.5/etc/openmpi-totalview.tcl**
You need to do this step only once.
diff --git a/docs.it4i/anselm-cluster-documentation/software/mpi/mpi.md b/docs.it4i/anselm-cluster-documentation/software/mpi/mpi.md
index 6c391d7b1..bc60afb16 100644
--- a/docs.it4i/anselm-cluster-documentation/software/mpi/mpi.md
+++ b/docs.it4i/anselm-cluster-documentation/software/mpi/mpi.md
@@ -108,7 +108,7 @@ Compile the above example with
## Running MPI Programs
!!! note
- The MPI program executable must be compatible with the loaded MPI module.
+ The MPI program executable must be compatible with the loaded MPI module.
Always compile and execute using the very same MPI module.
It is strongly discouraged to mix mpi implementations. Linking an application with one MPI implementation and running mpirun/mpiexec form other implementation may result in unexpected errors.
diff --git a/docs.it4i/anselm-cluster-documentation/storage.md b/docs.it4i/anselm-cluster-documentation/storage.md
index a7404b3fe..c521ccb7c 100644
--- a/docs.it4i/anselm-cluster-documentation/storage.md
+++ b/docs.it4i/anselm-cluster-documentation/storage.md
@@ -29,11 +29,11 @@ There is default stripe configuration for Anselm Lustre filesystems. However, us
!!! note
Setting stripe size and stripe count correctly for your needs may significantly impact the I/O performance you experience.
-Use the lfs getstripe for getting the stripe parameters. Use the lfs setstripe command for setting the stripe parameters to get optimal I/O performance The correct stripe setting depends on your needs and file access patterns.
+Use the lfs getstripe for getting the stripe parameters. Use the lfs setstripe command for setting the stripe parameters to get optimal I/O performance The correct stripe setting depends on your needs and file access patterns.
```bash
$ lfs getstripe dir|filename
-$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename
+$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename
```
Example:
diff --git a/docs.it4i/salomon/.storage.md.swp b/docs.it4i/salomon/.storage.md.swp
new file mode 100644
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diff --git a/docs.it4i/salomon/job-submission-and-execution.md b/docs.it4i/salomon/job-submission-and-execution.md
index 0fb2fa040..e7a4c4ff0 100644
--- a/docs.it4i/salomon/job-submission-and-execution.md
+++ b/docs.it4i/salomon/job-submission-and-execution.md
@@ -138,7 +138,7 @@ Nodes directly connected to the same InifiBand switch can communicate most effic
!!! note
We recommend allocating compute nodes of a single switch when the best possible computational network performance is required to run job efficiently.
-Nodes directly connected to the one InifiBand switch can be allocated using node grouping on PBS resource attribute switch.
+Nodes directly connected to the one InifiBand switch can be allocated using node grouping on PBS resource attribute switch.
In this example, we request all 9 nodes directly connected to the same switch using node grouping placement.
diff --git a/docs.it4i/salomon/shell-and-data-access.md b/docs.it4i/salomon/shell-and-data-access.md
index 438e60cca..93b68abaa 100644
--- a/docs.it4i/salomon/shell-and-data-access.md
+++ b/docs.it4i/salomon/shell-and-data-access.md
@@ -41,13 +41,13 @@ On **Windows**, use [PuTTY ssh client](../get-started-with-it4innovations/access
After logging in, you will see the command prompt:
```bash
- _____ _
- / ____| | |
- | (___ __ _| | ___ _ __ ___ ___ _ __
- \___ \ / _` | |/ _ \| '_ ` _ \ / _ \| '_ \
+ _____ _
+ / ____| | |
+ | (___ __ _| | ___ _ __ ___ ___ _ __
+ \___ \ / _` | |/ _ \| '_ ` _ \ / _ \| '_ \
____) | (_| | | (_) | | | | | | (_) | | | |
|_____/ \__,_|_|\___/|_| |_| |_|\___/|_| |_|
-
+
http://www.it4i.cz/?lang=en
diff --git a/docs.it4i/salomon/software/debuggers/total-view.md b/docs.it4i/salomon/software/debuggers/total-view.md
index 17a2d4234..a7642fa19 100644
--- a/docs.it4i/salomon/software/debuggers/total-view.md
+++ b/docs.it4i/salomon/software/debuggers/total-view.md
@@ -80,7 +80,7 @@ To debug a serial code use:
To debug a parallel code compiled with **OpenMPI** you need to setup your TotalView environment:
-!!! hint
+!!! hint
To be able to run parallel debugging procedure from the command line without stopping the debugger in the mpiexec source code you have to add the following function to your **~/.tvdrc** file.
```bash
diff --git a/docs.it4i/salomon/software/intel-xeon-phi.md b/docs.it4i/salomon/software/intel-xeon-phi.md
index 65457058c..f5085912c 100644
--- a/docs.it4i/salomon/software/intel-xeon-phi.md
+++ b/docs.it4i/salomon/software/intel-xeon-phi.md
@@ -518,7 +518,7 @@ The compilation command for this example is:
$ g++ cmdoptions.cpp gemm.cpp ../common/basic.cpp ../common/cmdparser.cpp ../common/oclobject.cpp -I../common -lOpenCL -o gemm -I/apps/intel/opencl/include/
```
-To see the performance of Intel Xeon Phi performing the DGEMM run the example as follows:
+To see the performance of Intel Xeon Phi performing the DGEMM run the example as follows:
```bash
./gemm -d 1
@@ -715,7 +715,7 @@ The output should be again similar to:
Hello world from process 0 of 4 on host cn207-mic0
```
-!!! hint
+!!! hint
**"mpiexec.hydra"** requires a file the MIC filesystem. If the file is missing please contact the system administrators.
A simple test to see if the file is present is to execute:
diff --git a/docs.it4i/salomon/software/numerical-languages/octave.md b/docs.it4i/salomon/software/numerical-languages/octave.md
index eda9196ae..1f96d0849 100644
--- a/docs.it4i/salomon/software/numerical-languages/octave.md
+++ b/docs.it4i/salomon/software/numerical-languages/octave.md
@@ -29,7 +29,7 @@ To run octave in batch mode, write an octave script, then write a bash jobscript
mkdir -p /scratch/work/user/$USER/$PBS_JOBID
cd /scratch/work/user/$USER/$PBS_JOBID || exit
- # copy input file to scratch
+ # copy input file to scratch
cp $PBS_O_WORKDIR/octcode.m .
# load octave module
diff --git a/docs.it4i/salomon/storage.md b/docs.it4i/salomon/storage.md
index 7d1d431f8..fd942bd97 100644
--- a/docs.it4i/salomon/storage.md
+++ b/docs.it4i/salomon/storage.md
@@ -66,8 +66,8 @@ There is default stripe configuration for Salomon Lustre file systems. However,
Use the lfs getstripe for getting the stripe parameters. Use the lfs setstripe command for setting the stripe parameters to get optimal I/O performance The correct stripe setting depends on your needs and file access patterns.
```bash
-$ lfs getstripe dir|filename
-$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir|filename
+$ lfs getstripe dir | filename
+$ lfs setstripe -s stripe_size -c stripe_count -o stripe_offset dir | filename
```
Example:
diff --git a/docs.it4i/software/lmod.md b/docs.it4i/software/lmod.md
index 66ed012ed..e28164a36 100644
--- a/docs.it4i/software/lmod.md
+++ b/docs.it4i/software/lmod.md
@@ -75,7 +75,7 @@ $ ml spider gcc
GCC:
---------------------------------------------------------------------------------
Description:
- The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/
+ The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/
Versions:
GCC/4.4.7-system
@@ -118,7 +118,7 @@ $ module spider GCC/6.2.0-2.27
GCC: GCC/6.2.0-2.27
--------------------------------------------------------------------------------------------------------------
Description:
- The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/
+ The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/
This module can be loaded directly: module load GCC/6.2.0-2.27
--
GitLab