From f582902b7e44d61ddb2d0ef121939eb529098573 Mon Sep 17 00:00:00 2001 From: Ondrej Dvorak <ondrej.dvorak@vsb.cz> Date: Fri, 29 Jul 2022 10:51:44 +0200 Subject: [PATCH] Update docs.it4i/dice.md --- docs.it4i/dice.md | 28 ++++++++++++++++++++++------ 1 file changed, 22 insertions(+), 6 deletions(-) diff --git a/docs.it4i/dice.md b/docs.it4i/dice.md index cc5b6b9ab..d1a79544e 100644 --- a/docs.it4i/dice.md +++ b/docs.it4i/dice.md @@ -27,7 +27,7 @@ We have to be sure about your identity, this will be done throught this steps:   -###IT4I user (you have IT4I account with access to cluster already ) +### ***IT4I user (you have IT4I account with access to cluster already )*** - iRods clients are provided as a module - config file (for client) will be loaded with module too @@ -37,6 +37,8 @@ ssh some_user@login.karolina.it4i.cz ml iRODS ``` now you can choose between Fuse client or iCommands + +***iCommands*** ```console iinit Enter your current PAM password: @@ -47,8 +49,22 @@ ils test.2 test.3 test.4 +``` +- upload `iput` , download `iget` +- for more help, type `ihelp` + +***Fuse*** +```console +./irodsfs -config ~/config.yml ~/IRODS +cd ~/IRODS +``` +you can work with fuse as an ordinary directory + + +### ***Users without it4i account (no access to cluster)*** +- we suppose, you will upload your data from your local pc/vm -### You Need a Client to Connect to iRods Server +#### You Need a Client to Connect to iRods Server - there are many iRods clients, but we recommend theese: - Cyberduck - for windows / mac, GUI . Password from aai.it4i.cz (keycloak) works @@ -73,7 +89,7 @@ cd ~ wget https://docs.it4i.cz/irods1.it4i.cz.crt [k] wget https://github.com/cyverse/irodsfs/releases/download/v0.7.6/irodsfs_amd64_linux_v0.7.6.tar tar -xvf ~/irodsfs_amd64_linux_v0.7.6.tar -mkdir /mount/irods +mkdir ~/IRODS ``` @@ -119,11 +135,11 @@ time="2022-07-29 09:51:18.008166" level=info msg="Successfully started backgroun ***How to put your data to iRODS*** ```console -cp test1G.txt /mount/irods +cp test1G.txt ~/IRODS ``` It works as ordinary filesystem ```console -ls -la /mount/irods/ +ls -la ~/IRODS total 0 -rwx------ 1 some_user some_user 1073741824 Nov 4 2021 test1G.txt ``` @@ -131,7 +147,7 @@ total 0 ***How to stop - unmout your collection:*** ```console -fusermount -u /mount/irods +fusermount -u ~/IRODS ``` #### iCommands -- GitLab