site_name: IT4Innovations Documentation
theme_dir: 'material'
docs_dir: docs.it4i
site_favicon: img/favicon.ico
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# Repository
repo_name: sccs/docs.it4i.cz
repo_url: https://code.it4i.cz/sccs/docs.it4i.cz
# Copyright
copyright: Copyright (c) 2017 IT4Innovations__VERSION__
pages:
- Home: index.md
- General:
- Applying for Resources: general/applying-for-resources.md
- Obtaining Login Credentials: general/obtaining-login-credentials/obtaining-login-credentials.md
- Certificates FAQ: general/obtaining-login-credentials/certificates-faq.md
- Accessing the Clusters:
- OpenSSH Keys (UNIX): general/accessing-the-clusters/shell-access-and-data-transfer/ssh-keys.md
- PuTTY (Windows): general/accessing-the-clusters/shell-access-and-data-transfer/putty.md
- X Window System: general/accessing-the-clusters/graphical-user-interface/x-window-system.md
- VNC: general/accessing-the-clusters/graphical-user-interface/vnc.md
- VPN Access: general/accessing-the-clusters/vpn-access.md
- Resource Allocation and Job Execution: general/resource_allocation_and_job_execution.md
- Salomon Cluster:
- Introduction: salomon/introduction.md
- Hardware Overview: salomon/hardware-overview.md
- Accessing the Cluster: salomon/shell-and-data-access.md
- Environment and Modules: salomon/environment-and-modules.md
- Resource Allocation and Job Execution:
- Resources Allocation Policy: salomon/resources-allocation-policy.md
- Job Scheduling: salomon/job-priority.md
- Job Submission and Execution: salomon/job-submission-and-execution.md
- Capacity Computing: salomon/capacity-computing.md
- Compute Nodes: salomon/compute-nodes.md
- Network:
- InfiniBand Network: salomon/network.md
- IB Single-Plane Topology: salomon/ib-single-plane-topology.md
- 7D Enhanced Hypercube: salomon/7d-enhanced-hypercube.md
- Storage: salomon/storage.md
- PRACE User Support: salomon/prace.md
- Anselm Cluster:
- Introduction: anselm/introduction.md
- Hardware Overview: anselm/hardware-overview.md
- Accessing the Cluster: anselm/shell-and-data-access.md
- Environment and Modules: anselm/environment-and-modules.md
- Resource Allocation and Job Execution:
- Resource Allocation Policy: anselm/resources-allocation-policy.md
- Job Priority: anselm/job-priority.md
- Job Submission and Execution: anselm/job-submission-and-execution.md
- Capacity Computing: anselm/capacity-computing.md
- Compute Nodes: anselm/compute-nodes.md
- Storage: anselm/storage.md
- Network: anselm/network.md
- Remote Visualization: anselm/remote-visualization.md
- PRACE User Support: anselm/prace.md
- Software:
- Modules:
- Lmod Environment: software/modules/lmod.md
- Intel Xeon Phi Environment: software/mic/mic_environment.md
- Modules Matrix: modules-matrix.md
- Available Salomon Modules: modules-salomon.md
- Available Salomon Modules on UV: modules-salomon-uv.md
- Available Salomon Modules on PHI Cards: modules-salomon-phi.md
- Available Anselm Modules: modules-anselm.md
- ISV Licenses: software/isv_licenses.md
- Bioinformatics:
- Bioinformatics Applications: software/bio/bioinformatics.md
- Omics Master:
- Overview: software/bio/omics-master/overview.md
- Diagnostic Component (TEAM): software/bio/omics-master/diagnostic-component-team.md
- Priorization Component (BiERApp): software/bio/omics-master/priorization-component-bierapp.md
- CAE:
- COMSOL:
- COMSOL: software/cae/comsol/comsol-multiphysics.md
- Licensing and Available Versions: software/cae/comsol/licensing-and-available-versions.md
- Chemistry:
- Molpro: software/chemistry/molpro.md
- Orca: software/chemistry/orca.md
- NWChem: software/chemistry/nwchem.md
- Phono3py: software/chemistry/phono3py.md
- Compilers: software/compilers.md
- Debuggers:
- Introduction: software/debuggers/Introduction.md
- Aislinn: software/debuggers/aislinn.md
- Allinea Forge (DDT,MAP): software/debuggers/allinea-ddt.md
- Allinea Performance Reports: software/debuggers/allinea-performance-reports.md
- CUBE: software/debuggers/cube.md
- Intel Performance Counter Monitor: software/debuggers/intel-performance-counter-monitor.md
- Intel VTune Amplifier XE: software/debuggers/intel-vtune-amplifier.md
- PAPI: software/debuggers/papi.md
- Scalasca: software/debuggers/scalasca.md
- Score-P: software/debuggers/score-p.md
- Total View: software/debuggers/total-view.md
- Valgrind: software/debuggers/valgrind.md
- Vampir: software/debuggers/vampir.md
- GPU:
- NVIDIA CUDA: anselm/software/nvidia-cuda.md
- Intel:
- Intel Suite:
- Introduction: software/intel/intel-suite/intel-parallel-studio-introduction.md
- Intel Advisor: software/intel/intel-suite/intel-advisor.md
- Intel Compilers: software/intel/intel-suite/intel-compilers.md
- Intel Debugger: software/intel/intel-suite/intel-debugger.md
- Intel IPP: software/intel/intel-suite/intel-integrated-performance-primitives.md
- Intel Inspector: software/intel/intel-suite/intel-inspector.md
- Intel MKL: software/intel/intel-suite/intel-mkl.md
- Intel TBB: software/intel/intel-suite/intel-tbb.md
- Intel Trace Analyzer and Collector: software/intel/intel-suite/intel-trace-analyzer-and-collector.md
- Intel Xeon Phi:
- Intel Xeon Phi Salomon: software/intel/intel-xeon-phi-salomon.md
- Intel Xeon Phi Anselm: software/intel/intel-xeon-phi-anselm.md
- Machine Learning:
- Introduction: software/machine-learning/introduction.md
- TensorFlow: software/machine-learning/tensorflow.md
- MPI:
- Introduction: software/mpi/mpi.md
- MPI4Py (MPI for Python): software/mpi/mpi4py-mpi-for-python.md
- Running Open MPI: software/mpi/Running_OpenMPI.md
- Running MPICH2: software/mpi/running-mpich2.md
- Numerical Languages:
- Introduction: software/numerical-languages/introduction.md
- Clp: salomon/software/numerical-libraries/Clp.md
- R: software/numerical-languages/r.md
- Matlab: software/numerical-languages/matlab.md
- Matlab 2013-2014: software/numerical-languages/matlab_1314.md
- Octave: software/numerical-languages/octave.md
- OpenCoarrays: software/numerical-languages/opencoarrays.md
- Numerical Libraries:
- FFTW: software/numerical-libraries/fftw.md
- GSL: software/numerical-libraries/gsl.md
- HDF5: software/numerical-libraries/hdf5.md
- Intel Numerical Libraries: software/numerical-libraries/intel-numerical-libraries.md
- MAGMA for Intel Xeon Phi: software/numerical-libraries/magma-for-intel-xeon-phi.md
- PETSc: software/numerical-libraries/petsc.md
- Trilinos: software/numerical-libraries/trilinos.md
- Languages:
- Java: software/lang/java.md
- C#: software/lang/csc.md
- Python: software/lang/python.md
- Python-Conda: software/lang/conda.md
- Phys:
- LMGC90: salomon/software/phys/LMGC90.md
- PragTic: salomon/software/phys/PragTic.md
- Tools:
- ANSYS:
- Introduction: software/tools/ansys/ansys.md
- ANSYS CFX: software/tools/ansys/ansys-cfx.md
- ANSYS Fluent: software/tools/ansys/ansys-fluent.md
- ANSYS LS-DYNA: software/tools/ansys/ansys-ls-dyna.md
- ANSYS MAPDL: software/tools/ansys/ansys-mechanical-apdl.md
- LS-DYNA: software/tools/ansys/ls-dyna.md
- Workbench: software/tools/ansys/workbench.md
- Setting License Preferences: software/tools/ansys/licensing.md
- Licensing and Available Versions: software/tools/ansys/setting-license-preferences.md
- EasyBuild: software/tools/easybuild.md
- Singularity Container:
- Singularity: software/tools/singularity.md
- Singularity on IT4Innovations: software/tools/singularity-it4i.md
- Spack: software/tools/spack.md
- Virtualization: software/tools/virtualization.md
- Visualisation:
- GPI-2: software/viz/gpi2.md
- OpenFOAM: software/viz/openfoam.md
- ParaView: software/viz/paraview.md
- PBS Pro Documentation: pbspro.md
- API Documentation: apiv1.md
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