Commit 67c041a2 authored by Lukáš Krupčík's avatar Lukáš Krupčík
Browse files

new file: g/GATK/GATK-

parent 116114b6
# IT4Innovations 2018
easyblock = 'Tarball'
name = 'GATK'
version = ''
versionsuffix = '-Java-%(javaver)s'
homepage = ''
description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute
to analyse next-generation resequencing data. The toolkit offers a wide variety of tools,
with a primary focus on variant discovery and genotyping as well as strong emphasis on
data quality assurance. Its robust architecture, powerful processing engine and
high-performance computing features make it capable of taking on projects of any size."""
toolchain = {'name': 'dummy', 'version': ''}
# download manually from
source_urls = ['']
sources = ['gatk-%(version)']
dependencies = [('Java', '1.8.0_144')]
#modloadmsg = "To execute GATK run: java -jar $EBROOTGATK/GenomeAnalysisTK.jar\n"
postinstallcmds = [
'mkdir %(installdir)s/bin',
'mv %(installdir)s/gatk %(installdir)s/bin',
sanity_check_paths = {
'files': ['gatk-package-', 'gatk-package-'],
'dirs': ['bin'],
moduleclass = 'bio'
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