Commit d278059f authored by Lukáš Krupčík's avatar Lukáš Krupčík
Browse files

Merge branch 'it4i-salomon'

parents 116114b6 67c041a2
# IT4Innovations 2018
easyblock = 'Tarball'
name = 'GATK'
version = '4.0.2.1'
versionsuffix = '-Java-%(javaver)s'
homepage = 'http://www.broadinstitute.org/gatk/'
description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute
to analyse next-generation resequencing data. The toolkit offers a wide variety of tools,
with a primary focus on variant discovery and genotyping as well as strong emphasis on
data quality assurance. Its robust architecture, powerful processing engine and
high-performance computing features make it capable of taking on projects of any size."""
toolchain = {'name': 'dummy', 'version': ''}
# download manually from http://www.broadinstitute.org/gatk/download
source_urls = [' https://github.com/broadinstitute/gatk/releases/download/%(version)s/']
sources = ['gatk-%(version)s.zip']
dependencies = [('Java', '1.8.0_144')]
#modloadmsg = "To execute GATK run: java -jar $EBROOTGATK/GenomeAnalysisTK.jar\n"
postinstallcmds = [
'mkdir %(installdir)s/bin',
'mv %(installdir)s/gatk %(installdir)s/bin',
]
sanity_check_paths = {
'files': ['gatk-package-4.0.2.1-local.jar', 'gatk-package-4.0.2.1-spark.jar'],
'dirs': ['bin'],
}
moduleclass = 'bio'
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