Commit e57a291c authored by Lukáš Krupčík's avatar Lukáš Krupčík

new file: g/GATK/GATK-4.0.3.0-Java-1.8.0_144.eb

	new file:   p/pydot/pydot-1.2.4-Py-3.6.eb
parent ac02e32e
# IT4Innovations 2018
easyblock = 'Tarball'
name = 'GATK'
version = '4.0.3.0'
versionsuffix = '-Java-%(javaver)s'
homepage = 'http://www.broadinstitute.org/gatk/'
description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute
to analyse next-generation resequencing data. The toolkit offers a wide variety of tools,
with a primary focus on variant discovery and genotyping as well as strong emphasis on
data quality assurance. Its robust architecture, powerful processing engine and
high-performance computing features make it capable of taking on projects of any size."""
toolchain = {'name': 'dummy', 'version': ''}
# download manually from http://www.broadinstitute.org/gatk/download
source_urls = [' https://github.com/broadinstitute/gatk/releases/download/%(version)s/']
sources = ['gatk-%(version)s.zip']
dependencies = [('Java', '1.8.0_144')]
postinstallcmds = [
'mkdir %(installdir)s/bin',
'mv %(installdir)s/gatk %(installdir)s/bin',
]
modextravars = {
'export GATK_LOCAL_JAR':'%(installdir)s/gatk-package-4.0.3.0-local.jar'
}
sanity_check_paths = {
'files': ['gatk-package-4.0.3.0-local.jar', 'gatk-package-4.0.3.0-spark.jar'],
'dirs': ['bin'],
}
moduleclass = 'bio'
# IT4Innovations 2018
easyblock = "PythonPackage"
name = 'pydot'
version = '1.2.4'
homepage = 'https://pypi.python.org/pypi/pydot'
description = 'A Python interface to GraphViz and the DOT language.'
toolchain = {'name': 'Py', 'version': '3.6'}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
dependencies = [
('pyparsing', '2.2.0'),
]
sanity_check_paths = {
'files': ['lib/python3.6/site-packages/%(name)s-%(version)s-py3.6.egg'],
'dirs': [],
}
moduleclass = 'python'
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment