Commit d3576765 authored by Lukáš Krupčík's avatar Lukáš Krupčík

new file: a/ABySS/ABySS-2.0.3-foss-2018a-Py-2.7.eb

	new file:   n/numpy/numpy-1.14.2-Py-2.7-test.eb
	new file:   p/phono3py/phono3py-1.11.13.35-Py-2.7-test.eb
	new file:   p/phono3py/phono3py-1.11.13.35-Py-2.7.eb
	new file:   p/phono3py/phono3py-1.12.9.5-Py-2.7.eb
	new file:   p/phonopy/phonopy-1.12.6.66-Py-2.7.eb
	new file:   z/zsh/zsh-5.2-foss-2018b.eb
	deleted:    p/phono3py/phono3py-1.12.7.46-Py-2.7.eb
parent d278059f
easyblock = 'ConfigureMake'
name = 'ABySS'
version = '2.0.3'
homepage = 'http://www.bcgsc.ca/platform/bioinfo/software/abyss'
description = """Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"""
toolchain = {'name': 'foss', 'version': '2018a'}
toolchainopts = {'usempi': True}
source_urls = ['https://github.com/bcgsc/abyss/releases/download/%(version)s/']
sources = [SOURCELOWER_TAR_GZ]
dependencies = [
('Boost', '1.66.0', '-Py-2.7'),
('sparsehash', '2.0.3'),
('SQLite', '3.21.0', '', True),
('pigz', '2.4', '', ('GCC', '6.3.0-2.27')),
('zsh', '5.2'),
]
configopts = '--enable-maxk=256 --with-boost=$EBROOTBOOST/include '
configopts += '--with-mpi=$EBROOTOPENMPI --with-sqlite=$EBROOTSQLITE3'
sanity_check_paths = {
'files': ["bin/ABYSS", "bin/ABYSS-P"],
'dirs': []
}
moduleclass = 'bio'
# IT4Innovations 2018
easyblock = 'PythonPackage'
name = 'numpy'
version = '1.14.2'
versionsuffix = '-test'
homepage = 'http://www.numpy.org'
description = """NumPy is the fundamental package needed for scientific computing with Python."""
toolchain = {'name': 'Py', 'version': '2.7'}
source_urls = ['https://github.com/numpy/numpy/releases/download/v%(version)s']
sources = [SOURCE_TAR_GZ]
patch = [
'numpy-1.8.1-mkl.patch',
'numpy-1.11.0-sse42.patch'
]
dependencies = [
('mkl', '2017.4.239', '', True),
]
sanity_check_paths = {
'files': [],
'dirs': ['lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg/numpy'],
}
sanity_check_commands = [('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')]
moduleclass = 'python'
......@@ -3,15 +3,16 @@
easyblock = "PythonPackage"
name = 'phono3py'
version = '1.12.7.46'
version = '1.11.13.35'
versionsuffix = '-test'
homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
description = """This software calculates phonon-phonon interaction related properties"""
toolchain = {'name': 'Py', 'version': '2.7'}
source_urls = ['https://pypi.python.org/packages/a5/93/3a9cc9f134ba1f7aa246a27c8a02137e7f9a7311df87ae656bba9051c6df/']
sources = ['%(name)s-%(version)s.tar.gz']
sources = [SOURCELOWER_TAR_GZ]
source_urls = ['http://sourceforge.net/projects/phonopy/files/phono3py/']
prebuildopts = 'python setup.py build #' # notice the hash hack to override setup.py
preinstallopts = 'python setup.py install --prefix=%(installdir)s #' # another hack
......
# IT4Innovations 2018
easyblock = "PythonPackage"
name = 'phono3py'
version = '1.11.13.35'
homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
description = """This software calculates phonon-phonon interaction related properties"""
toolchain = {'name': 'Py', 'version': '2.7'}
sources = [SOURCELOWER_TAR_GZ]
source_urls = ['http://sourceforge.net/projects/phonopy/files/phono3py/']
prebuildopts = 'python setup.py build #' # notice the hash hack to override setup.py
preinstallopts = 'python setup.py install --prefix=%(installdir)s #' # another hack
skipsteps = ['test']
options = {'modulename': 'phonopy'}
dependencies = [
('OpenBLAS', '0.2.19', '-GCC-6.3.0-2.27-LAPACK-3.7.0', True),
('numpy', '1.13.3'),
('h5py', '2.7.1'),
('matplotlib', '2.1.1'),
('PyYAML', '3.12'),
('phonopy', '1.12.4.11'),
]
moduleclass = 'phys'
# IT4Innovations 2018
easyblock = "PythonPackage"
name = 'phono3py'
version = '1.12.9.5'
homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
description = """This software calculates phonon-phonon interaction related properties"""
toolchain = {'name': 'Py', 'version': '2.7'}
sources = [SOURCELOWER_TAR_GZ]
source_urls = ['https://pypi.python.org/packages/81/fd/b2a3be820ff70af7ea88039e0ef36ed4e9c1df7d85e1b91c69339a503cf5/']
prebuildopts = 'python setup.py build #' # notice the hash hack to override setup.py
preinstallopts = 'python setup.py install --prefix=%(installdir)s #' # another hack
skipsteps = ['test']
options = {'modulename': 'phonopy'}
dependencies = [
('OpenBLAS', '0.2.19', '-GCC-6.3.0-2.27-LAPACK-3.7.0', True),
('numpy', '1.14.2', '-test'),
('h5py', '2.7.1'),
('matplotlib', '2.1.1'),
('PyYAML', '3.12'),
('phonopy', '1.12.6.66'),
]
moduleclass = 'phys'
# IT4Innovations 2018
easyblock = 'PythonPackage'
name = 'phonopy'
version = '1.12.6.66'
homepage = 'https://atztogo.github.io/phonopy'
description = """Phonopy is an open source package of phonon calculations based on the supercell approach."""
toolchain = {'name': 'Py', 'version': '2.7'}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
dependencies = [
('matplotlib', '2.1.1'),
('lxml', '4.1.1'),
('PyYAML', '3.12'),
('numpy', '1.13.3'),
('h5py', '2.7.1'),
('scipy', '1.0.0')
]
moduleclass = 'python'
# IT4Innovations 2018
easyblock = 'ConfigureMake'
name = 'zsh'
version = '5.2'
homepage = 'http://www.zsh.org/'
description = "Zsh is a shell designed for interactive use, although it is also a powerful scripting language."
toolchain = {'name': 'foss', 'version': '2018a'}
sources = [SOURCELOWER_TAR_XZ]
source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s']
dependencies = [
('ncurses', '6.0', '', True),
]
moduleclass = 'tools'
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